Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47317 * 60.00177 * 3 2 1 5 5 C 1.52997 * 109.47269 * 299.99832 * 3 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 7 7 C 1.38233 * 120.00109 * 359.72323 * 6 3 2 8 8 C 1.38239 * 119.99759 * 179.74218 * 7 6 3 9 9 C 1.38234 * 119.99962 * 0.55517 * 8 7 6 10 10 C 1.50696 * 120.00172 * 179.72028 * 9 8 7 11 11 N 1.46896 * 109.47554 * 269.97849 * 10 9 8 12 12 C 1.46904 * 110.99896 * 293.95678 * 11 10 9 13 13 C 1.46893 * 111.00340 * 169.99750 * 11 10 9 14 14 H 1.08996 * 109.47180 * 310.00150 * 13 11 10 15 15 C 1.52999 * 109.47112 * 70.00418 * 13 11 10 16 16 C 1.50707 * 109.47323 * 190.00362 * 13 11 10 17 17 H 1.07995 * 119.99631 * 359.97438 * 16 13 11 18 18 C 1.37872 * 119.99808 * 180.02562 * 16 13 11 19 19 N 1.31508 * 120.00357 * 359.97438 * 18 16 13 20 20 Si 1.86808 * 119.99659 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47047 * 59.99878 * 20 18 16 22 22 H 1.48498 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46947 * 299.99735 * 20 18 16 24 24 C 1.38238 * 120.00082 * 359.69846 * 9 8 7 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 9 8 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 33 33 H 1.08996 * 109.46952 * 59.99813 * 4 3 2 34 34 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 35 35 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 36 36 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 37 37 H 1.08004 * 119.99934 * 0.02562 * 7 6 3 38 38 H 1.07999 * 119.99953 * 180.27297 * 8 7 6 39 39 H 1.09004 * 109.46985 * 29.97969 * 10 9 8 40 40 H 1.08995 * 109.47261 * 149.97746 * 10 9 8 41 41 H 1.08993 * 109.47572 * 59.99756 * 12 11 10 42 42 H 1.09002 * 109.46624 * 179.97438 * 12 11 10 43 43 H 1.08997 * 109.46682 * 299.99420 * 12 11 10 44 44 H 1.09001 * 109.47114 * 180.02562 * 15 13 11 45 45 H 1.09005 * 109.46539 * 299.99614 * 15 13 11 46 46 H 1.08996 * 109.47317 * 59.99816 * 15 13 11 47 47 H 0.97004 * 120.00287 * 180.02562 * 19 18 16 48 48 H 1.08000 * 120.00578 * 179.97438 * 24 9 8 49 49 H 1.07999 * 120.00165 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 -0.0006 7 6 4.2382 0.2452 0.0047 8 6 5.6206 0.2452 -0.0013 9 6 6.3118 1.4423 -0.0010 10 6 7.8187 1.4423 -0.0011 11 7 8.3086 1.4424 1.3838 12 6 7.9592 2.6957 2.0657 13 6 9.7574 1.2042 1.4298 14 1 10.0010 0.3289 0.8276 15 6 10.4929 2.4257 0.8749 16 6 10.1825 0.9668 2.8560 17 1 9.4497 0.9910 3.6489 18 6 11.5070 0.7199 3.1485 19 7 12.3994 0.6910 2.1830 20 14 12.0340 0.4264 4.9165 21 1 11.3205 -0.7591 5.4554 22 1 13.4986 0.1855 4.9630 23 1 11.7018 1.6191 5.7365 24 6 5.6207 2.6395 -0.0010 25 6 4.2383 2.6396 -0.0008 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8938 3.1913 1.2494 32 1 0.4401 2.1638 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2493 36 1 1.8938 3.1913 -1.2495 37 1 3.6981 -0.6901 0.0089 38 1 6.1605 -0.6901 -0.0016 39 1 8.1820 0.5522 -0.5150 40 1 8.1820 2.3322 -0.5150 41 1 6.8756 2.8127 2.0783 42 1 8.3333 2.6690 3.0891 43 1 8.4092 3.5352 1.5358 44 1 11.5679 2.2487 0.9086 45 1 10.1855 2.5972 -0.1567 46 1 10.2493 3.3010 1.4770 47 1 13.3312 0.5169 2.3888 48 1 6.1606 3.5748 -0.0003 49 1 3.6983 3.5749 -0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000509398165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = -2.513112 kcal Electronic energy + Delta-G solvation = -23391.657884 eV Core-core repulsion = 20317.370614 eV Total energy + Delta-G solvation = -3074.287270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98440 -39.18322 -37.53599 -34.81395 -32.63110 -31.99603 -30.72724 -29.93072 -28.09168 -27.93948 -27.26421 -25.87960 -24.55072 -23.01584 -22.26559 -20.97737 -19.62615 -18.27244 -17.46111 -17.00129 -16.40128 -16.13061 -15.96484 -15.54878 -15.34433 -14.97257 -14.69357 -14.47871 -14.38141 -14.27186 -14.19287 -13.59424 -13.26339 -13.13172 -12.87250 -12.82549 -12.76740 -12.65609 -12.55407 -12.49998 -12.33710 -12.28006 -12.09428 -11.99732 -11.91266 -11.70984 -11.44671 -11.27805 -11.11045 -10.93799 -10.49338 -9.71101 -9.39111 -8.83435 -8.10655 -6.21832 0.50346 0.59712 1.42404 1.44097 1.51747 2.42798 2.86877 3.17983 3.59107 3.71269 3.81347 4.01248 4.11630 4.13304 4.21126 4.41414 4.45691 4.55364 4.56690 4.59936 4.64107 4.66094 4.73819 4.80573 4.84446 4.85699 4.89041 4.89277 5.03077 5.08201 5.12655 5.16050 5.16579 5.18541 5.21636 5.26317 5.30802 5.32387 5.49759 5.53079 5.56390 5.66404 5.69913 5.78565 5.82626 5.85639 6.19431 6.21213 6.48581 6.72097 6.91055 7.47320 8.95126 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003113 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.584869 B = 8992.506032 C = 9297.510029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.021 4.021 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.077 4.077 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.083 4.083 10 C 0.094 3.906 11 N -0.538 5.538 12 C 0.043 3.957 13 C 0.215 3.785 14 H 0.005 0.995 15 C -0.157 4.157 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.921 5.921 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.023 0.977 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.119 0.881 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.509 2.994 -6.227 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.021 4.021 4 C -0.196 4.196 5 C -0.194 4.194 6 C -0.077 4.077 7 C -0.143 4.143 8 C -0.132 4.132 9 C -0.084 4.084 10 C -0.033 4.033 11 N -0.262 5.262 12 C -0.106 4.106 13 C 0.108 3.892 14 H 0.023 0.977 15 C -0.217 4.217 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.137 0.863 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.537 2.574 -6.003 24.426 hybrid contribution 1.604 0.334 0.383 1.683 sum -21.933 2.908 -5.620 22.827 Atomic orbital electron populations 1.21892 0.94636 1.02001 1.02500 1.21658 0.96862 0.95054 1.01806 1.19507 0.89064 0.96670 0.96837 1.21935 1.01723 0.99951 0.95983 1.21920 1.01706 0.99933 0.95848 1.20053 0.95946 0.92679 0.98999 1.21298 0.93260 0.98860 1.00883 1.21113 0.94814 0.97429 0.99823 1.19790 0.94396 0.94096 1.00108 1.20968 0.91654 1.00187 0.90510 1.62248 1.15696 1.34526 1.13706 1.22187 0.99783 0.89814 0.98781 1.19080 0.82058 0.92512 0.95515 0.97693 1.22201 1.03664 0.99268 0.96549 1.21327 0.92985 1.47717 0.93293 0.92769 1.25683 0.96607 0.95234 1.01156 1.70001 1.02338 1.50521 1.33268 0.85598 0.76888 0.78777 0.80282 1.19885 1.20895 1.19643 1.21111 0.94847 0.97119 1.00653 1.21076 0.93218 0.98465 1.00732 0.92052 0.91775 0.92518 0.91865 0.92300 0.92457 0.90580 0.93577 0.93127 0.90649 0.92433 0.84487 0.86774 0.91855 0.94916 0.91482 0.92925 0.96280 0.91933 0.95785 0.94755 0.92938 0.86251 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.21 71.98 0.66 -1.13 16 2 C -0.12 -1.77 3.65 30.60 0.11 -1.66 16 3 C -0.02 -0.34 0.63 -52.93 -0.03 -0.38 16 4 C -0.14 -2.14 7.94 71.98 0.57 -1.57 16 5 C -0.14 -1.94 7.93 71.98 0.57 -1.37 16 6 C -0.08 -1.73 4.76 -19.86 -0.09 -1.82 16 7 C -0.13 -3.16 8.98 22.27 0.20 -2.96 16 8 C -0.11 -3.45 9.70 22.27 0.22 -3.23 16 9 C -0.08 -2.71 4.88 -19.87 -0.10 -2.81 16 10 C 0.09 3.59 4.69 85.56 0.40 3.99 16 11 N -0.54 -23.93 4.69 -906.07 -4.25 -28.18 16 12 C 0.04 1.71 8.27 127.69 1.06 2.77 16 13 C 0.22 11.22 2.31 44.17 0.10 11.32 16 14 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 15 C -0.16 -7.81 8.22 71.98 0.59 -7.22 16 16 C -0.51 -28.99 7.91 25.60 0.20 -28.79 16 17 H 0.05 3.07 7.12 -2.91 -0.02 3.05 16 18 C 0.01 0.65 5.30 84.65 0.45 1.10 16 19 N -0.92 -53.67 11.32 21.44 0.24 -53.43 16 20 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.12 -3.35 7.97 22.27 0.18 -3.17 16 25 C -0.12 -2.77 8.71 22.27 0.19 -2.57 16 26 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 27 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.98 7.52 -2.39 -0.02 0.96 16 30 H 0.06 0.98 7.50 -2.39 -0.02 0.96 16 31 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 32 H 0.08 0.91 6.43 -2.39 -0.02 0.90 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16 36 H 0.06 0.80 7.39 -2.39 -0.02 0.78 16 37 H 0.14 2.91 5.90 -2.91 -0.02 2.90 16 38 H 0.11 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.06 2.47 7.88 -2.38 -0.02 2.46 16 40 H 0.03 1.22 7.00 -2.39 -0.02 1.21 16 41 H 0.07 2.39 6.17 -2.39 -0.01 2.38 16 42 H 0.05 2.29 6.76 -2.39 -0.02 2.28 16 43 H 0.02 0.74 6.46 -2.39 -0.02 0.72 16 44 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 45 H 0.02 1.06 6.91 -2.38 -0.02 1.04 16 46 H 0.03 1.63 6.42 -2.39 -0.02 1.62 16 47 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.12 3.20 8.03 -2.91 -0.02 3.18 16 49 H 0.14 2.58 7.10 -2.91 -0.02 2.56 16 Total: -1.00 -61.17 363.97 4.20 -56.96 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.91 Total: 17.73 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 5.28 Total: -39.50 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -4.01 Total: -81.61 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.17 4.20 -56.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509398165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.450 kcal (2) G-P(sol) polarization free energy of solvation -61.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds