Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47368 * 59.99811 * 3 2 1 5 5 C 1.53001 * 109.47003 * 299.99909 * 3 2 1 6 6 C 1.50698 * 109.46906 * 180.02562 * 3 2 1 7 7 C 1.38236 * 119.99763 * 180.02562 * 6 3 2 8 8 C 1.38234 * 119.99637 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00312 * 0.26875 * 8 7 6 10 10 C 1.50698 * 120.00211 * 179.72744 * 9 8 7 11 11 N 1.46903 * 109.47178 * 89.99905 * 10 9 8 12 12 C 1.46897 * 111.00179 * 293.95786 * 11 10 9 13 13 C 1.46902 * 111.00327 * 170.00021 * 11 10 9 14 14 H 1.08994 * 109.46953 * 59.99973 * 13 11 10 15 15 C 1.53000 * 109.47035 * 300.00269 * 13 11 10 16 16 C 1.50697 * 109.47164 * 180.02562 * 13 11 10 17 17 H 1.08002 * 120.00334 * 5.52729 * 16 13 11 18 18 C 1.37877 * 119.99788 * 185.52949 * 16 13 11 19 19 N 1.31516 * 119.99953 * 8.92134 * 18 16 13 20 20 Si 1.86804 * 119.99891 * 188.91824 * 18 16 13 21 21 H 1.48498 * 109.47232 * 84.99832 * 20 18 16 22 22 H 1.48502 * 109.46747 * 204.99798 * 20 18 16 23 23 H 1.48499 * 109.47160 * 324.99286 * 20 18 16 24 24 C 1.38236 * 119.99891 * 359.53903 * 9 8 7 25 25 C 1.38230 * 119.99966 * 0.41780 * 24 9 8 26 26 H 1.09001 * 109.47208 * 60.00083 * 1 2 3 27 27 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47021 * 300.00236 * 1 2 3 29 29 H 1.08996 * 109.47243 * 240.00209 * 2 1 3 30 30 H 1.08998 * 109.47408 * 119.99431 * 2 1 3 31 31 H 1.09000 * 109.47277 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46915 * 300.00287 * 4 3 2 33 33 H 1.09001 * 109.46870 * 60.00063 * 4 3 2 34 34 H 1.09004 * 109.46768 * 299.99941 * 5 3 2 35 35 H 1.08993 * 109.47039 * 59.99694 * 5 3 2 36 36 H 1.09001 * 109.47400 * 180.02562 * 5 3 2 37 37 H 1.07995 * 120.00025 * 359.97438 * 7 6 3 38 38 H 1.08009 * 120.00061 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.47589 * 210.00172 * 10 9 8 40 40 H 1.09007 * 109.47453 * 330.00415 * 10 9 8 41 41 H 1.08998 * 109.47211 * 60.00131 * 12 11 10 42 42 H 1.09005 * 109.47327 * 179.97438 * 12 11 10 43 43 H 1.08996 * 109.47244 * 299.99306 * 12 11 10 44 44 H 1.09009 * 109.47023 * 66.09758 * 15 13 11 45 45 H 1.08994 * 109.47375 * 186.09716 * 15 13 11 46 46 H 1.09002 * 109.47560 * 306.10108 * 15 13 11 47 47 H 0.97006 * 119.99696 * 179.97438 * 19 18 16 48 48 H 1.08001 * 120.00034 * 180.21166 * 24 9 8 49 49 H 1.07996 * 120.00454 * 179.78537 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 -0.0006 7 6 4.2381 2.6397 -0.0002 8 6 5.6205 2.6397 -0.0003 9 6 6.3117 1.4426 -0.0063 10 6 7.8186 1.4426 -0.0126 11 7 8.3141 1.4389 1.3703 12 6 7.9674 2.6903 2.0571 13 6 9.7631 1.2006 1.4099 14 1 10.2759 1.9876 0.8571 15 6 10.0745 -0.1555 0.7736 16 6 10.2337 1.2031 2.8415 17 1 9.5164 1.2760 3.6457 18 6 11.5800 1.1125 3.1247 19 7 12.4635 1.2004 2.1545 20 14 12.1492 0.8648 4.8866 21 1 12.1278 -0.5833 5.2148 22 1 13.5313 1.3864 5.0382 23 1 11.2410 1.5945 5.8074 24 6 5.6205 0.2454 -0.0028 25 6 4.2382 0.2454 -0.0018 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8937 3.1914 1.2494 32 1 0.4400 2.1638 1.2491 33 1 1.8933 1.6501 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4400 2.1637 -1.2493 36 1 1.8936 3.1914 -1.2496 37 1 3.6981 3.5750 0.0002 38 1 6.1606 3.5750 -0.0003 39 1 8.1799 0.5540 -0.5303 40 1 8.1799 2.3340 -0.5255 41 1 6.8838 2.8071 2.0744 42 1 8.3456 2.6608 3.0790 43 1 8.4152 3.5313 1.5279 44 1 9.8337 -0.1221 -0.2891 45 1 11.1333 -0.3813 0.8993 46 1 9.4781 -0.9293 1.2570 47 1 13.4107 1.1370 2.3538 48 1 6.1605 -0.6899 -0.0041 49 1 3.6982 -0.6899 -0.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000509398166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = 9.612086 kcal Electronic energy + Delta-G solvation = -23380.092411 eV Core-core repulsion = 20306.330929 eV Total energy + Delta-G solvation = -3073.761482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95501 -37.71411 -36.14838 -32.89443 -31.46709 -30.79360 -29.65520 -29.00042 -27.41565 -26.68186 -24.91054 -24.39890 -23.03776 -21.93009 -21.08864 -19.35244 -18.77529 -16.61738 -16.20819 -15.34402 -15.10367 -14.89305 -14.74259 -14.20332 -14.04391 -13.78478 -13.60206 -13.53188 -13.23402 -13.06508 -12.38646 -12.24198 -12.15383 -12.13184 -11.88099 -11.82151 -11.34443 -11.32426 -11.21578 -11.04166 -10.93019 -10.78524 -10.72867 -10.58667 -10.42090 -10.27862 -10.16764 -10.06406 -9.76967 -8.88479 -8.60672 -8.43595 -8.21585 -7.13527 -6.02573 -4.03341 1.62597 1.69988 3.32514 3.38472 3.41551 3.99924 4.43764 4.52273 4.58338 4.80498 5.11729 5.16875 5.18918 5.20952 5.24853 5.28540 5.30738 5.40334 5.43314 5.53235 5.62872 5.73563 5.73735 5.77737 5.84561 5.86096 5.91505 5.95544 6.05363 6.15542 6.21861 6.23827 6.30560 6.35374 6.38394 6.47305 6.72284 6.77676 6.83431 6.84999 6.99758 7.04624 7.13722 7.29927 7.45993 7.69591 7.84099 8.15157 8.29494 8.62268 9.04004 9.60493 11.06567 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029759 B = 0.003078 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.674043 B = 9094.061494 C = 9214.436738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.062 4.062 10 C 0.084 3.916 11 N -0.530 5.530 12 C 0.037 3.963 13 C 0.210 3.790 14 H 0.005 0.995 15 C -0.127 4.127 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.098 4.098 25 C -0.124 4.124 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.008 0.992 44 H 0.012 0.988 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.260 0.740 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.329 0.602 -6.492 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.196 4.196 6 C -0.083 4.083 7 C -0.137 4.137 8 C -0.131 4.131 9 C -0.062 4.062 10 C -0.044 4.044 11 N -0.255 5.255 12 C -0.112 4.112 13 C 0.104 3.896 14 H 0.023 0.977 15 C -0.185 4.185 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.117 4.117 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.031 0.969 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.326 0.217 -6.270 22.230 hybrid contribution 0.958 0.546 0.536 1.226 sum -20.368 0.762 -5.734 21.174 Atomic orbital electron populations 1.21913 0.96026 1.01426 1.01963 1.21661 0.95630 0.95778 1.02217 1.19446 0.91105 0.95747 0.95886 1.21934 1.00563 1.00236 0.96944 1.21930 1.00614 1.00181 0.96868 1.19664 0.94202 0.93285 1.01139 1.20819 0.93899 0.97198 1.01738 1.21035 0.93912 0.97706 1.00484 1.19977 0.96017 0.92858 0.97367 1.21126 0.89741 1.00926 0.92581 1.62160 1.18164 1.33649 1.11520 1.22250 0.98524 0.89899 1.00512 1.19270 0.80428 0.93215 0.96703 0.97713 1.21781 1.02240 0.99001 0.95517 1.21103 0.91601 1.50022 0.91559 0.91869 1.24934 0.96687 0.95308 0.97175 1.69974 1.01375 1.50049 1.31744 0.86590 0.77680 0.78552 0.85054 1.20545 1.21454 1.19970 1.21025 0.93693 0.97907 0.99079 1.21081 0.94079 0.97484 1.01531 0.92517 0.92990 0.92457 0.91695 0.91576 0.92577 0.92344 0.92464 0.92629 0.92334 0.92602 0.86844 0.86662 0.90140 0.95349 0.93534 0.90559 0.97304 0.96945 0.91298 0.94423 0.92984 0.86155 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.21 37.16 0.34 -0.79 16 2 C -0.12 -1.01 3.65 -26.73 -0.10 -1.11 16 3 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 4 C -0.14 -1.28 7.94 37.16 0.29 -0.98 16 5 C -0.14 -1.19 7.93 37.16 0.29 -0.90 16 6 C -0.08 -1.01 4.76 -104.62 -0.50 -1.51 16 7 C -0.12 -1.53 8.71 -39.58 -0.34 -1.88 16 8 C -0.11 -1.67 7.97 -39.58 -0.32 -1.99 16 9 C -0.06 -1.01 4.88 -104.62 -0.51 -1.52 16 10 C 0.08 1.58 4.93 -4.98 -0.02 1.55 16 11 N -0.53 -11.64 4.61 -237.73 -1.10 -12.73 16 12 C 0.04 0.76 8.86 60.06 0.53 1.29 16 13 C 0.21 5.33 1.93 -68.86 -0.13 5.20 16 14 H 0.01 0.15 8.09 -51.93 -0.42 -0.27 16 15 C -0.13 -3.06 8.69 37.16 0.32 -2.74 16 16 C -0.50 -13.91 7.66 -34.44 -0.26 -14.17 16 17 H 0.06 1.75 6.66 -52.49 -0.35 1.40 16 18 C 0.06 1.68 5.16 -17.82 -0.09 1.59 16 19 N -0.89 -25.75 12.14 55.43 0.67 -25.08 16 20 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.10 -1.50 9.70 -39.59 -0.38 -1.88 16 25 C -0.12 -1.63 8.98 -39.58 -0.36 -1.98 16 26 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 29 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 30 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 31 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 32 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 36 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 37 H 0.11 1.26 7.10 -52.49 -0.37 0.88 16 38 H 0.12 1.64 8.03 -52.48 -0.42 1.22 16 39 H 0.08 1.50 5.90 -51.93 -0.31 1.20 16 40 H 0.03 0.53 8.07 -51.92 -0.42 0.12 16 41 H 0.05 0.86 6.17 -51.93 -0.32 0.54 16 42 H 0.08 1.69 6.21 -51.93 -0.32 1.36 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.01 0.25 6.53 -51.92 -0.34 -0.08 16 45 H 0.07 1.81 6.77 -51.93 -0.35 1.46 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.12 1.35 5.89 -52.49 -0.31 1.04 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -28.76 367.22 -9.73 -38.49 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.49 Total: -0.54 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.33 Total: -22.12 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.42 Total: -37.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.76 -9.73 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509398166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.100 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds