Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47368 * 59.99811 * 3 2 1 5 5 C 1.53001 * 109.47003 * 299.99909 * 3 2 1 6 6 C 1.50698 * 109.46906 * 180.02562 * 3 2 1 7 7 C 1.38236 * 119.99763 * 180.02562 * 6 3 2 8 8 C 1.38234 * 119.99637 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00312 * 0.26875 * 8 7 6 10 10 C 1.50698 * 120.00211 * 179.72744 * 9 8 7 11 11 N 1.46903 * 109.47178 * 89.99905 * 10 9 8 12 12 C 1.46897 * 111.00179 * 293.95786 * 11 10 9 13 13 C 1.46902 * 111.00327 * 170.00021 * 11 10 9 14 14 H 1.08994 * 109.46953 * 59.99973 * 13 11 10 15 15 C 1.53000 * 109.47035 * 300.00269 * 13 11 10 16 16 C 1.50697 * 109.47164 * 180.02562 * 13 11 10 17 17 H 1.08002 * 120.00334 * 5.52729 * 16 13 11 18 18 C 1.37877 * 119.99788 * 185.52949 * 16 13 11 19 19 N 1.31516 * 119.99953 * 8.92134 * 18 16 13 20 20 Si 1.86804 * 119.99891 * 188.91824 * 18 16 13 21 21 H 1.48498 * 109.47232 * 84.99832 * 20 18 16 22 22 H 1.48502 * 109.46747 * 204.99798 * 20 18 16 23 23 H 1.48499 * 109.47160 * 324.99286 * 20 18 16 24 24 C 1.38236 * 119.99891 * 359.53903 * 9 8 7 25 25 C 1.38230 * 119.99966 * 0.41780 * 24 9 8 26 26 H 1.09001 * 109.47208 * 60.00083 * 1 2 3 27 27 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47021 * 300.00236 * 1 2 3 29 29 H 1.08996 * 109.47243 * 240.00209 * 2 1 3 30 30 H 1.08998 * 109.47408 * 119.99431 * 2 1 3 31 31 H 1.09000 * 109.47277 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46915 * 300.00287 * 4 3 2 33 33 H 1.09001 * 109.46870 * 60.00063 * 4 3 2 34 34 H 1.09004 * 109.46768 * 299.99941 * 5 3 2 35 35 H 1.08993 * 109.47039 * 59.99694 * 5 3 2 36 36 H 1.09001 * 109.47400 * 180.02562 * 5 3 2 37 37 H 1.07995 * 120.00025 * 359.97438 * 7 6 3 38 38 H 1.08009 * 120.00061 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.47589 * 210.00172 * 10 9 8 40 40 H 1.09007 * 109.47453 * 330.00415 * 10 9 8 41 41 H 1.08998 * 109.47211 * 60.00131 * 12 11 10 42 42 H 1.09005 * 109.47327 * 179.97438 * 12 11 10 43 43 H 1.08996 * 109.47244 * 299.99306 * 12 11 10 44 44 H 1.09009 * 109.47023 * 66.09758 * 15 13 11 45 45 H 1.08994 * 109.47375 * 186.09716 * 15 13 11 46 46 H 1.09002 * 109.47560 * 306.10108 * 15 13 11 47 47 H 0.97006 * 119.99696 * 179.97438 * 19 18 16 48 48 H 1.08001 * 120.00034 * 180.21166 * 24 9 8 49 49 H 1.07996 * 120.00454 * 179.78537 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4426 -0.0006 7 6 4.2381 2.6397 -0.0002 8 6 5.6205 2.6397 -0.0003 9 6 6.3117 1.4426 -0.0063 10 6 7.8186 1.4426 -0.0126 11 7 8.3141 1.4389 1.3703 12 6 7.9674 2.6903 2.0571 13 6 9.7631 1.2006 1.4099 14 1 10.2759 1.9876 0.8571 15 6 10.0745 -0.1555 0.7736 16 6 10.2337 1.2031 2.8415 17 1 9.5164 1.2760 3.6457 18 6 11.5800 1.1125 3.1247 19 7 12.4635 1.2004 2.1545 20 14 12.1492 0.8648 4.8866 21 1 12.1278 -0.5833 5.2148 22 1 13.5313 1.3864 5.0382 23 1 11.2410 1.5945 5.8074 24 6 5.6205 0.2454 -0.0028 25 6 4.2382 0.2454 -0.0018 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8937 3.1914 1.2494 32 1 0.4400 2.1638 1.2491 33 1 1.8933 1.6501 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4400 2.1637 -1.2493 36 1 1.8936 3.1914 -1.2496 37 1 3.6981 3.5750 0.0002 38 1 6.1606 3.5750 -0.0003 39 1 8.1799 0.5540 -0.5303 40 1 8.1799 2.3340 -0.5255 41 1 6.8838 2.8071 2.0744 42 1 8.3456 2.6608 3.0790 43 1 8.4152 3.5313 1.5279 44 1 9.8337 -0.1221 -0.2891 45 1 11.1333 -0.3813 0.8993 46 1 9.4781 -0.9293 1.2570 47 1 13.4107 1.1370 2.3538 48 1 6.1605 -0.6899 -0.0041 49 1 3.6982 -0.6899 -0.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000509398166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = -4.145628 kcal Electronic energy + Delta-G solvation = -23380.688990 eV Core-core repulsion = 20306.330929 eV Total energy + Delta-G solvation = -3074.358061 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97667 -39.06746 -37.45800 -34.81963 -32.56500 -32.03660 -30.93805 -30.43534 -28.21349 -28.09177 -26.60760 -25.65535 -24.46180 -23.00590 -22.32879 -21.14101 -19.62471 -18.42512 -17.48581 -17.01024 -16.38419 -15.98844 -15.85091 -15.55203 -15.48362 -15.19104 -14.68708 -14.41917 -14.33224 -14.30076 -14.08655 -13.72076 -13.20092 -13.15052 -12.94742 -12.82577 -12.81106 -12.65216 -12.63563 -12.48772 -12.28467 -12.15167 -12.10483 -11.99032 -11.93105 -11.68166 -11.44290 -11.25902 -11.10975 -10.89437 -10.55434 -9.70980 -9.38345 -8.93231 -8.15442 -6.23565 0.50314 0.59967 1.41061 1.42885 1.51878 2.41624 2.86502 3.15356 3.54874 3.71256 3.81498 4.01800 4.11814 4.12766 4.21187 4.41485 4.44694 4.53568 4.56917 4.59540 4.65145 4.68941 4.71708 4.81474 4.84054 4.88932 4.91621 4.98208 5.02743 5.05362 5.08230 5.15931 5.18837 5.21944 5.21966 5.26666 5.30897 5.32441 5.44468 5.52852 5.56485 5.66298 5.69348 5.72963 5.82715 5.85384 6.17793 6.20938 6.36154 6.71460 6.91526 7.44588 8.93262 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029759 B = 0.003078 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.674043 B = 9094.061494 C = 9214.436738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.021 4.021 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.083 4.083 10 C 0.090 3.910 11 N -0.536 5.536 12 C 0.045 3.955 13 C 0.214 3.786 14 H -0.033 1.033 15 C -0.115 4.115 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.110 4.110 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.005 0.995 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.040 0.960 47 H 0.262 0.738 48 H 0.118 0.882 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.956 0.536 -6.186 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.021 4.021 4 C -0.196 4.196 5 C -0.194 4.194 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.084 4.084 10 C -0.038 4.038 11 N -0.260 5.260 12 C -0.104 4.104 13 C 0.107 3.893 14 H -0.016 1.016 15 C -0.173 4.173 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.185 4.185 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.193 1.193 24 C -0.129 4.129 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.136 0.864 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.974 0.152 -5.969 24.707 hybrid contribution 1.671 0.586 0.383 1.812 sum -22.304 0.738 -5.586 23.004 Atomic orbital electron populations 1.21892 0.94673 1.02008 1.02475 1.21656 0.96832 0.94991 1.01863 1.19508 0.89070 0.96717 0.96787 1.21935 1.01718 0.99924 0.96027 1.21922 1.01703 0.99906 0.95895 1.20051 0.95939 0.92684 0.98980 1.21059 0.93166 0.98495 1.00801 1.21111 0.94893 0.97145 1.00782 1.19777 0.94304 0.94119 1.00161 1.21075 0.91766 1.00424 0.90508 1.62111 1.15707 1.34376 1.13783 1.22171 0.99789 0.89290 0.99126 1.19078 0.82294 0.92563 0.95343 1.01589 1.21597 1.00532 0.98292 0.96887 1.21359 0.91893 1.50084 0.92445 0.92419 1.25703 0.96766 0.94929 1.01128 1.70091 1.01615 1.50742 1.33733 0.85587 0.77247 0.78622 0.80301 1.19930 1.21012 1.19328 1.21109 0.94754 0.97397 0.99641 1.21309 0.93297 0.98831 1.00823 0.91812 0.92485 0.92080 0.91797 0.92225 0.92546 0.90587 0.93529 0.93092 0.90653 0.92524 0.84698 0.86572 0.90492 0.95902 0.91185 0.92425 0.97678 0.94828 0.93792 0.94055 0.92896 0.86435 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.21 71.98 0.66 -1.10 16 2 C -0.12 -1.72 3.65 30.60 0.11 -1.61 16 3 C -0.02 -0.34 0.63 -52.93 -0.03 -0.38 16 4 C -0.14 -2.14 7.94 71.98 0.57 -1.57 16 5 C -0.14 -1.94 7.93 71.98 0.57 -1.37 16 6 C -0.08 -1.71 4.76 -19.86 -0.09 -1.80 16 7 C -0.12 -2.80 8.71 22.27 0.19 -2.61 16 8 C -0.12 -3.46 7.97 22.27 0.18 -3.28 16 9 C -0.08 -2.69 4.88 -19.87 -0.10 -2.79 16 10 C 0.09 3.42 4.93 85.56 0.42 3.84 16 11 N -0.54 -23.91 4.61 -906.05 -4.18 -28.09 16 12 C 0.04 1.86 8.86 127.69 1.13 2.99 16 13 C 0.21 11.21 1.93 44.17 0.09 11.29 16 14 H -0.03 -1.98 8.09 -2.39 -0.02 -2.00 16 15 C -0.11 -5.65 8.69 71.98 0.63 -5.02 16 16 C -0.52 -29.22 7.66 25.60 0.20 -29.02 16 17 H 0.06 3.25 6.66 -2.91 -0.02 3.23 16 18 C 0.01 0.76 5.16 84.65 0.44 1.20 16 19 N -0.92 -54.33 12.14 21.45 0.26 -54.06 16 20 Si 0.96 44.34 29.55 68.60 2.03 46.36 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.11 -3.28 9.70 22.27 0.22 -3.07 16 25 C -0.12 -3.08 8.98 22.27 0.20 -2.88 16 26 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 29 H 0.06 0.96 7.51 -2.39 -0.02 0.95 16 30 H 0.06 0.97 7.52 -2.39 -0.02 0.95 16 31 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 32 H 0.08 0.91 6.43 -2.39 -0.02 0.90 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16 36 H 0.06 0.80 7.39 -2.39 -0.02 0.78 16 37 H 0.14 2.61 7.10 -2.91 -0.02 2.59 16 38 H 0.12 3.23 8.03 -2.91 -0.02 3.21 16 39 H 0.08 2.92 5.90 -2.39 -0.01 2.91 16 40 H 0.02 0.88 8.07 -2.38 -0.02 0.86 16 41 H 0.07 2.56 6.17 -2.39 -0.01 2.54 16 42 H 0.06 2.59 6.21 -2.38 -0.01 2.58 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.03 1.45 6.53 -2.38 -0.02 1.44 16 45 H 0.04 2.35 6.77 -2.39 -0.02 2.34 16 46 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 48 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 49 H 0.14 2.84 5.89 -2.91 -0.02 2.82 16 Total: -1.00 -62.00 367.22 4.39 -57.61 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.90 Total: 15.35 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 5.38 Total: -37.17 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.92 Total: -82.15 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.00 4.39 -57.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000509398166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.465 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds