Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38252 * 120.00308 * 2 1 4 4 C 1.38219 * 119.99897 * 180.23309 * 3 2 1 5 5 C 1.38246 * 119.99891 * 359.49206 * 4 3 2 6 6 C 1.38210 * 120.00226 * 0.24964 * 5 4 3 7 7 C 1.50708 * 120.00183 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47352 * 254.87658 * 7 6 5 9 9 C 1.46897 * 110.99885 * 190.29560 * 8 7 6 10 10 C 1.50697 * 109.47212 * 169.98216 * 9 8 7 11 11 H 1.08006 * 119.99995 * 2.12514 * 10 9 8 12 12 C 1.37881 * 120.00378 * 182.13085 * 10 9 8 13 13 N 1.31518 * 119.99401 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00266 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47089 * 89.99893 * 14 12 10 16 16 H 1.48498 * 109.47367 * 209.99734 * 14 12 10 17 17 H 1.48504 * 109.47212 * 329.99568 * 14 12 10 18 18 C 1.46895 * 111.00055 * 66.33901 * 8 7 6 19 19 C 1.52996 * 109.47019 * 80.55943 * 18 8 7 20 20 C 1.53001 * 109.47421 * 77.77337 * 19 18 8 21 21 C 1.53010 * 109.47193 * 197.77085 * 19 18 8 22 22 C 1.52999 * 109.47327 * 317.76918 * 19 18 8 23 23 C 1.38216 * 119.99559 * 179.72583 * 2 1 3 24 24 C 1.50697 * 120.00078 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47177 * 270.27883 * 1 2 3 26 26 H 1.09003 * 109.46769 * 30.28095 * 1 2 3 27 27 H 1.08999 * 109.46871 * 150.27773 * 1 2 3 28 28 H 1.08001 * 119.99747 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.99734 * 179.76131 * 4 3 2 30 30 H 1.08003 * 119.99960 * 180.28245 * 5 4 3 31 31 H 1.09003 * 109.46832 * 14.87630 * 7 6 5 32 32 H 1.09004 * 109.46642 * 134.87344 * 7 6 5 33 33 H 1.08994 * 109.47252 * 289.98058 * 9 8 7 34 34 H 1.09005 * 109.47221 * 49.98092 * 9 8 7 35 35 H 0.96997 * 119.99518 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.46992 * 200.55821 * 18 8 7 37 37 H 1.09000 * 109.47086 * 320.55710 * 18 8 7 38 38 H 1.08999 * 109.47187 * 22.20960 * 20 19 18 39 39 H 1.09002 * 109.47433 * 142.21603 * 20 19 18 40 40 H 1.09002 * 109.46596 * 262.21611 * 20 19 18 41 41 H 1.08999 * 109.46840 * 59.99443 * 21 19 18 42 42 H 1.08991 * 109.47034 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46577 * 300.00050 * 21 19 18 44 44 H 1.09002 * 109.47236 * 63.22517 * 22 19 18 45 45 H 1.08998 * 109.47462 * 183.23045 * 22 19 18 46 46 H 1.09008 * 109.47102 * 303.23017 * 22 19 18 47 47 H 1.08998 * 109.47294 * 270.02293 * 24 23 2 48 48 H 1.09000 * 109.47151 * 30.02657 * 24 23 2 49 49 H 1.08999 * 109.47037 * 150.03090 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 -0.0049 5 6 4.2717 -0.0001 0.0009 6 6 3.5806 -1.1970 0.0063 7 6 4.3341 -2.5022 0.0131 8 7 4.2668 -3.1135 -1.3209 9 6 4.7751 -4.4915 -1.2948 10 6 4.4671 -5.1655 -2.6069 11 1 3.9764 -4.6139 -3.3953 12 6 4.8114 -6.4864 -2.8011 13 7 5.4093 -7.1579 -1.8412 14 14 4.4289 -7.3221 -4.4272 15 1 5.5741 -7.1454 -5.3561 16 1 4.1974 -8.7707 -4.1970 17 1 3.2111 -6.7146 -5.0216 18 6 4.9924 -2.3033 -2.3084 19 6 6.4904 -2.5971 -2.2073 20 6 6.7971 -3.9275 -2.8980 21 6 7.2772 -1.4755 -2.8887 22 6 6.8953 -2.6819 -0.7343 23 6 2.1980 -1.1970 0.0057 24 6 1.4445 -2.5020 0.0126 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1324 -0.0088 30 1 5.3517 -0.0002 0.0017 31 1 5.3758 -2.3190 0.2767 32 1 3.8873 -3.1758 0.7444 33 1 5.8536 -4.4780 -1.1377 34 1 4.2966 -5.0399 -0.4834 35 1 5.6519 -8.0871 -1.9779 36 1 4.6404 -2.5503 -3.3101 37 1 4.8153 -1.2460 -2.1115 38 1 6.0086 -4.1546 -3.6154 39 1 7.7521 -3.8551 -3.4184 40 1 6.8490 -4.7205 -2.1520 41 1 7.0587 -0.5277 -2.3968 42 1 8.3444 -1.6851 -2.8171 43 1 6.9888 -1.4152 -3.9382 44 1 6.3777 -3.5172 -0.2627 45 1 7.9722 -2.8340 -0.6616 46 1 6.6245 -1.7547 -0.2291 47 1 1.2628 -2.8113 1.0418 48 1 0.4921 -2.3743 -0.5020 49 1 2.0336 -3.2644 -0.4972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513713403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = 57.394416 kcal Electronic energy + Delta-G solvation = -24972.594202 eV Core-core repulsion = 21900.904718 eV Total energy + Delta-G solvation = -3071.689484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01366 -38.60701 -33.97442 -33.18109 -32.86002 -31.40687 -28.41636 -27.68310 -27.05399 -26.12884 -25.93781 -25.24240 -23.66141 -20.92199 -20.48186 -19.71414 -18.19414 -16.38543 -15.79314 -15.67788 -15.14146 -14.72473 -14.54281 -14.23626 -13.83232 -13.63378 -13.33481 -12.98060 -12.71514 -12.64359 -12.40230 -12.30041 -12.04576 -11.65332 -11.62864 -11.43657 -11.21845 -11.08594 -11.02745 -10.85219 -10.76762 -10.68984 -10.59251 -10.41000 -10.29448 -10.06809 -9.77294 -9.56079 -9.31186 -9.07304 -8.34138 -8.27464 -8.17454 -6.84693 -5.98706 -3.91919 1.66019 1.70824 3.32461 3.40017 3.43601 4.01354 4.46584 5.02485 5.07470 5.13575 5.28476 5.33906 5.35678 5.45950 5.49488 5.52861 5.64300 5.67544 5.72267 5.83452 5.89507 6.01222 6.04385 6.09444 6.13181 6.19356 6.21173 6.24339 6.32537 6.34496 6.41007 6.49659 6.55223 6.67127 6.75136 6.80632 6.83670 6.87644 6.89200 7.03439 7.14753 7.20227 7.36551 7.37319 7.51784 7.84476 7.86509 8.17447 8.31265 8.63153 9.07676 9.64274 11.11590 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.005551 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.581738 B = 5042.927090 C = 6033.202635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.057 4.057 7 C 0.051 3.949 8 N -0.523 5.523 9 C 0.157 3.843 10 C -0.485 4.485 11 H 0.060 0.940 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.885 3.115 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.275 1.275 18 C 0.078 3.922 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.163 4.163 23 C -0.058 4.058 24 C -0.126 4.126 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.013 0.987 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 13.671 3.973 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.148 4.148 5 C -0.139 4.139 6 C -0.058 4.058 7 C -0.076 4.076 8 N -0.245 5.245 9 C 0.033 3.967 10 C -0.523 4.523 11 H 0.078 0.922 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.051 4.051 19 C -0.095 4.095 20 C -0.200 4.200 21 C -0.191 4.191 22 C -0.219 4.219 23 C -0.059 4.059 24 C -0.182 4.182 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.216 13.436 3.874 14.348 hybrid contribution 0.729 -0.377 -0.688 1.071 sum -2.486 13.059 3.186 13.670 Atomic orbital electron populations 1.20813 0.91849 1.02563 1.01803 1.19745 0.95656 0.92845 1.01368 1.20852 0.94198 0.96992 1.02650 1.20950 0.94223 0.97559 1.02026 1.21007 0.99382 0.92155 1.01401 1.19898 0.93195 0.95068 0.97645 1.21856 0.99494 0.92274 0.94003 1.62325 1.55306 1.04083 1.02828 1.20673 0.96230 0.82077 0.97732 1.20991 1.36811 0.95308 0.99224 0.92233 1.24846 0.95915 0.97273 0.96442 1.69928 1.41811 1.09931 1.32176 0.86686 0.78700 0.78786 0.84438 1.20841 1.21462 1.19974 1.22145 0.89644 0.95916 0.97357 1.21125 0.97026 0.96543 0.94827 1.22586 0.99486 0.95580 1.02382 1.21863 0.99303 0.97781 1.00170 1.22748 1.00641 1.01615 0.96933 1.19657 0.93241 0.94715 0.98240 1.20989 1.00092 0.95615 1.01537 0.91700 0.92217 0.91069 0.86969 0.86890 0.86769 0.91345 0.91084 0.94263 0.95992 0.93117 0.91301 0.93037 0.89585 0.96764 0.89734 0.93847 0.93569 0.93128 0.89567 0.93959 0.93252 0.92286 0.92141 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.60 36.01 0.35 -0.93 16 2 C -0.10 -1.34 5.88 -104.62 -0.62 -1.96 16 3 C -0.13 -1.68 9.70 -39.58 -0.38 -2.07 16 4 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 5 C -0.12 -1.76 8.58 -39.59 -0.34 -2.10 16 6 C -0.06 -0.93 4.52 -104.62 -0.47 -1.40 16 7 C 0.05 0.89 3.66 -4.97 -0.02 0.87 16 8 N -0.52 -10.41 3.64 -237.52 -0.86 -11.27 16 9 C 0.16 3.67 3.65 -4.98 -0.02 3.66 16 10 C -0.48 -12.43 5.23 -34.44 -0.18 -12.61 16 11 H 0.06 1.57 7.02 -52.48 -0.37 1.20 16 12 C 0.06 1.48 5.20 -17.82 -0.09 1.39 16 13 N -0.90 -25.08 13.29 55.43 0.74 -24.34 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 C 0.08 1.47 4.59 -3.83 -0.02 1.45 16 19 C -0.09 -1.66 0.77 -154.51 -0.12 -1.78 16 20 C -0.14 -2.98 7.23 37.16 0.27 -2.71 16 21 C -0.13 -2.04 8.17 37.16 0.30 -1.73 16 22 C -0.16 -2.78 6.33 37.16 0.24 -2.54 16 23 C -0.06 -0.91 5.88 -104.62 -0.62 -1.53 16 24 C -0.13 -1.94 8.92 36.00 0.32 -1.62 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.07 0.80 5.95 -51.93 -0.31 0.49 16 28 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.11 1.55 7.17 -52.48 -0.38 1.18 16 31 H 0.07 1.15 3.04 -51.93 -0.16 0.99 16 32 H 0.07 1.28 7.36 -51.93 -0.38 0.90 16 33 H 0.04 0.95 2.09 -51.93 -0.11 0.84 16 34 H 0.02 0.57 7.93 -51.93 -0.41 0.16 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.07 1.41 6.88 -51.93 -0.36 1.06 16 37 H 0.05 0.92 5.88 -51.93 -0.31 0.61 16 38 H 0.09 1.95 5.09 -51.93 -0.26 1.69 16 39 H 0.01 0.26 7.72 -51.93 -0.40 -0.14 16 40 H 0.08 1.99 5.15 -51.93 -0.27 1.73 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.65 3.81 -51.93 -0.20 1.45 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.76 5.69 -51.92 -0.30 0.46 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.84 5.95 -51.93 -0.31 0.54 16 49 H 0.10 1.83 6.12 -51.93 -0.32 1.52 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -26.76 349.94 -9.44 -36.20 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.77 Total: 5.89 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -1.80 Total: -27.74 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.13 Total: -35.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.76 -9.44 -36.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513713403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.594 kcal (2) G-P(sol) polarization free energy of solvation -26.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds