Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38252 * 120.00308 * 2 1 4 4 C 1.38219 * 119.99897 * 180.23309 * 3 2 1 5 5 C 1.38246 * 119.99891 * 359.49206 * 4 3 2 6 6 C 1.38210 * 120.00226 * 0.24964 * 5 4 3 7 7 C 1.50708 * 120.00183 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47352 * 254.87658 * 7 6 5 9 9 C 1.46897 * 110.99885 * 190.29560 * 8 7 6 10 10 C 1.50697 * 109.47212 * 169.98216 * 9 8 7 11 11 H 1.08006 * 119.99995 * 2.12514 * 10 9 8 12 12 C 1.37881 * 120.00378 * 182.13085 * 10 9 8 13 13 N 1.31518 * 119.99401 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00266 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47089 * 89.99893 * 14 12 10 16 16 H 1.48498 * 109.47367 * 209.99734 * 14 12 10 17 17 H 1.48504 * 109.47212 * 329.99568 * 14 12 10 18 18 C 1.46895 * 111.00055 * 66.33901 * 8 7 6 19 19 C 1.52996 * 109.47019 * 80.55943 * 18 8 7 20 20 C 1.53001 * 109.47421 * 77.77337 * 19 18 8 21 21 C 1.53010 * 109.47193 * 197.77085 * 19 18 8 22 22 C 1.52999 * 109.47327 * 317.76918 * 19 18 8 23 23 C 1.38216 * 119.99559 * 179.72583 * 2 1 3 24 24 C 1.50697 * 120.00078 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47177 * 270.27883 * 1 2 3 26 26 H 1.09003 * 109.46769 * 30.28095 * 1 2 3 27 27 H 1.08999 * 109.46871 * 150.27773 * 1 2 3 28 28 H 1.08001 * 119.99747 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.99734 * 179.76131 * 4 3 2 30 30 H 1.08003 * 119.99960 * 180.28245 * 5 4 3 31 31 H 1.09003 * 109.46832 * 14.87630 * 7 6 5 32 32 H 1.09004 * 109.46642 * 134.87344 * 7 6 5 33 33 H 1.08994 * 109.47252 * 289.98058 * 9 8 7 34 34 H 1.09005 * 109.47221 * 49.98092 * 9 8 7 35 35 H 0.96997 * 119.99518 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.46992 * 200.55821 * 18 8 7 37 37 H 1.09000 * 109.47086 * 320.55710 * 18 8 7 38 38 H 1.08999 * 109.47187 * 22.20960 * 20 19 18 39 39 H 1.09002 * 109.47433 * 142.21603 * 20 19 18 40 40 H 1.09002 * 109.46596 * 262.21611 * 20 19 18 41 41 H 1.08999 * 109.46840 * 59.99443 * 21 19 18 42 42 H 1.08991 * 109.47034 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46577 * 300.00050 * 21 19 18 44 44 H 1.09002 * 109.47236 * 63.22517 * 22 19 18 45 45 H 1.08998 * 109.47462 * 183.23045 * 22 19 18 46 46 H 1.09008 * 109.47102 * 303.23017 * 22 19 18 47 47 H 1.08998 * 109.47294 * 270.02293 * 24 23 2 48 48 H 1.09000 * 109.47151 * 30.02657 * 24 23 2 49 49 H 1.08999 * 109.47037 * 150.03090 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 -0.0049 5 6 4.2717 -0.0001 0.0009 6 6 3.5806 -1.1970 0.0063 7 6 4.3341 -2.5022 0.0131 8 7 4.2668 -3.1135 -1.3209 9 6 4.7751 -4.4915 -1.2948 10 6 4.4671 -5.1655 -2.6069 11 1 3.9764 -4.6139 -3.3953 12 6 4.8114 -6.4864 -2.8011 13 7 5.4093 -7.1579 -1.8412 14 14 4.4289 -7.3221 -4.4272 15 1 5.5741 -7.1454 -5.3561 16 1 4.1974 -8.7707 -4.1970 17 1 3.2111 -6.7146 -5.0216 18 6 4.9924 -2.3033 -2.3084 19 6 6.4904 -2.5971 -2.2073 20 6 6.7971 -3.9275 -2.8980 21 6 7.2772 -1.4755 -2.8887 22 6 6.8953 -2.6819 -0.7343 23 6 2.1980 -1.1970 0.0057 24 6 1.4445 -2.5020 0.0126 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1324 -0.0088 30 1 5.3517 -0.0002 0.0017 31 1 5.3758 -2.3190 0.2767 32 1 3.8873 -3.1758 0.7444 33 1 5.8536 -4.4780 -1.1377 34 1 4.2966 -5.0399 -0.4834 35 1 5.6519 -8.0871 -1.9779 36 1 4.6404 -2.5503 -3.3101 37 1 4.8153 -1.2460 -2.1115 38 1 6.0086 -4.1546 -3.6154 39 1 7.7521 -3.8551 -3.4184 40 1 6.8490 -4.7205 -2.1520 41 1 7.0587 -0.5277 -2.3968 42 1 8.3444 -1.6851 -2.8171 43 1 6.9888 -1.4152 -3.9382 44 1 6.3777 -3.5172 -0.2627 45 1 7.9722 -2.8340 -0.6616 46 1 6.6245 -1.7547 -0.2291 47 1 1.2628 -2.8113 1.0418 48 1 0.4921 -2.3743 -0.5020 49 1 2.0336 -3.2644 -0.4972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513713403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = 45.238466 kcal Electronic energy + Delta-G solvation = -24973.121324 eV Core-core repulsion = 21900.904718 eV Total energy + Delta-G solvation = -3072.216606 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38138 -39.89629 -35.35748 -34.90973 -34.12859 -32.81016 -30.00590 -29.18092 -28.29853 -27.40791 -27.23500 -26.73047 -25.37769 -22.49130 -21.55806 -21.02951 -19.70154 -18.35015 -17.00162 -16.95041 -16.72891 -16.20521 -16.00624 -15.85401 -15.03743 -14.92066 -14.70464 -14.41605 -14.15102 -13.71439 -13.67238 -13.46201 -13.33742 -13.14282 -12.92996 -12.88088 -12.73278 -12.65909 -12.47455 -12.41167 -12.35220 -12.28711 -12.05999 -11.89585 -11.59740 -11.53696 -11.42079 -11.16672 -11.03247 -10.87950 -10.40218 -9.38747 -9.28521 -8.47272 -8.05320 -6.03912 0.57072 0.61252 1.40415 1.42955 1.51396 2.46434 2.90962 3.26663 3.62879 3.97089 4.01766 4.08111 4.10329 4.19498 4.25596 4.27542 4.45830 4.52810 4.61981 4.63955 4.76939 4.78369 4.79214 4.87067 4.92149 4.94111 4.95107 4.98841 5.01536 5.13409 5.16617 5.18486 5.22717 5.23590 5.28176 5.38279 5.45948 5.49461 5.57275 5.59803 5.70980 5.72093 5.78310 5.83868 5.99574 6.05382 6.25562 6.30156 6.58387 6.84655 7.03024 7.55450 9.03638 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.005551 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.581738 B = 5042.927090 C = 6033.202635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.077 4.077 7 C 0.059 3.941 8 N -0.530 5.530 9 C 0.172 3.828 10 C -0.480 4.480 11 H 0.049 0.951 12 C 0.012 3.988 13 N -0.929 5.929 14 Si 0.939 3.061 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.273 1.273 18 C 0.085 3.915 19 C -0.091 4.091 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.119 4.119 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.042 0.958 34 H -0.016 1.016 35 H 0.258 0.742 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 16.845 3.665 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.078 4.078 7 C -0.067 4.067 8 N -0.252 5.252 9 C 0.047 3.953 10 C -0.519 4.519 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.571 5.571 14 Si 0.766 3.234 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.044 4.044 19 C -0.092 4.092 20 C -0.191 4.191 21 C -0.185 4.185 22 C -0.212 4.212 23 C -0.082 4.082 24 C -0.176 4.176 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.002 0.998 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.248 16.625 3.560 17.310 hybrid contribution 0.689 -1.289 -0.556 1.564 sum -2.560 15.336 3.004 15.836 Atomic orbital electron populations 1.20852 0.90054 1.03210 1.02794 1.20066 0.97144 0.92482 1.00543 1.21245 0.94484 0.97714 1.01178 1.21306 0.94548 0.98093 1.00486 1.21152 1.00020 0.92021 1.01442 1.19804 0.93500 0.94685 0.99776 1.21753 1.00158 0.92824 0.92012 1.62156 1.55562 1.02805 1.04722 1.20373 0.95878 0.83808 0.95203 1.21144 1.35715 0.95413 0.99642 0.93291 1.25453 0.96053 0.97950 0.99032 1.70037 1.43196 1.10042 1.33817 0.85836 0.78575 0.77673 0.81316 1.20210 1.21463 1.19778 1.22065 0.90207 0.96360 0.95736 1.21069 0.96733 0.96022 0.95414 1.22385 0.99248 0.96365 1.01073 1.21791 0.99301 0.97266 1.00119 1.22618 1.00898 1.01534 0.96192 1.19776 0.93385 0.95334 0.99668 1.20871 1.00079 0.95057 1.01578 0.90470 0.90394 0.91586 0.84108 0.83981 0.85719 0.90516 0.92925 0.94109 0.99824 0.93299 0.93547 0.91319 0.92039 0.95449 0.93029 0.91804 0.92569 0.92918 0.92315 0.92969 0.91065 0.91734 0.90970 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.60 71.24 0.68 -1.56 16 2 C -0.10 -2.63 5.88 -19.86 -0.12 -2.74 16 3 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 4 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 5 C -0.13 -3.41 8.58 22.26 0.19 -3.21 16 6 C -0.08 -2.43 4.52 -19.86 -0.09 -2.52 16 7 C 0.06 2.12 3.66 85.56 0.31 2.43 16 8 N -0.53 -21.86 3.64 -905.38 -3.30 -25.15 16 9 C 0.17 8.53 3.65 85.56 0.31 8.84 16 10 C -0.48 -25.71 5.23 25.60 0.13 -25.58 16 11 H 0.05 2.68 7.02 -2.91 -0.02 2.66 16 12 C 0.01 0.68 5.20 84.66 0.44 1.12 16 13 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 14 Si 0.94 44.11 29.54 68.60 2.03 46.13 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 C 0.08 3.17 4.59 86.30 0.40 3.57 16 19 C -0.09 -3.16 0.77 -52.18 -0.04 -3.20 16 20 C -0.13 -5.62 7.23 71.98 0.52 -5.10 16 21 C -0.13 -3.52 8.17 71.99 0.59 -2.94 16 22 C -0.16 -5.18 6.33 71.98 0.46 -4.72 16 23 C -0.08 -2.50 5.88 -19.87 -0.12 -2.62 16 24 C -0.12 -3.78 8.92 71.23 0.64 -3.15 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.07 1.37 5.95 -2.39 -0.01 1.36 16 28 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.12 2.98 7.17 -2.91 -0.02 2.96 16 31 H 0.08 2.58 3.04 -2.39 -0.01 2.57 16 32 H 0.05 2.03 7.36 -2.38 -0.02 2.01 16 33 H 0.04 2.07 2.09 -2.39 -0.01 2.07 16 34 H -0.02 -0.92 7.93 -2.38 -0.02 -0.94 16 35 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.05 1.93 6.88 -2.38 -0.02 1.92 16 37 H 0.07 2.34 5.88 -2.39 -0.01 2.33 16 38 H 0.06 2.86 5.09 -2.39 -0.01 2.85 16 39 H 0.03 1.03 7.72 -2.39 -0.02 1.01 16 40 H 0.05 2.51 5.15 -2.39 -0.01 2.50 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 2.30 3.81 -2.39 -0.01 2.29 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.04 5.69 -2.38 -0.01 2.03 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.03 5.95 -2.39 -0.01 2.02 16 49 H 0.06 2.51 6.12 -2.39 -0.01 2.50 16 Total: -1.00 -59.82 349.94 4.70 -55.12 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.94 Total: 24.16 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.75 Total: -46.68 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.01 Total: -78.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.82 4.70 -55.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513713403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.362 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds