Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47093 * 2 1 4 4 C 1.36928 * 120.00481 * 274.98444 * 3 2 1 5 5 H 1.07997 * 120.00866 * 144.53104 * 4 3 2 6 6 C 1.38816 * 119.99829 * 324.53352 * 4 3 2 7 7 N 1.31621 * 119.99807 * 338.59414 * 6 4 3 8 8 Si 1.86800 * 120.00222 * 158.59452 * 6 4 3 9 9 H 1.48500 * 109.47021 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46827 * 119.99674 * 8 6 4 11 11 H 1.48492 * 109.47248 * 239.99974 * 8 6 4 12 12 C 1.46502 * 119.99920 * 94.98358 * 3 2 1 13 13 C 1.50696 * 109.47204 * 96.72392 * 12 3 2 14 14 C 1.38235 * 120.00385 * 273.52797 * 13 12 3 15 15 C 1.50707 * 119.99628 * 359.97438 * 14 13 12 16 16 C 1.38230 * 120.00428 * 179.76533 * 14 13 12 17 17 C 1.38239 * 119.99795 * 0.48128 * 16 14 13 18 18 C 1.50696 * 119.99966 * 179.76535 * 17 16 14 19 19 C 1.53007 * 109.47330 * 240.02446 * 18 17 16 20 20 C 1.52992 * 109.47393 * 0.02763 * 18 17 16 21 21 C 1.53001 * 109.46778 * 120.02963 * 18 17 16 22 22 C 1.38237 * 119.99923 * 359.80017 * 17 16 14 23 23 C 1.38234 * 119.99953 * 93.79838 * 13 12 3 24 24 C 1.50701 * 119.99942 * 0.02562 * 23 13 12 25 25 H 1.09005 * 109.47072 * 299.99477 * 1 2 3 26 26 H 1.08998 * 109.47317 * 59.99799 * 1 2 3 27 27 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46409 * 240.00219 * 2 1 3 29 29 H 1.08997 * 109.46598 * 120.00404 * 2 1 3 30 30 H 0.97003 * 120.00239 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47444 * 216.72676 * 12 3 2 32 32 H 1.09006 * 109.46882 * 336.72761 * 12 3 2 33 33 H 1.09000 * 109.47164 * 95.48795 * 15 14 13 34 34 H 1.09002 * 109.47033 * 215.48337 * 15 14 13 35 35 H 1.08998 * 109.47075 * 335.48354 * 15 14 13 36 36 H 1.07997 * 120.00401 * 180.25490 * 16 14 13 37 37 H 1.08994 * 109.46545 * 60.00701 * 19 18 17 38 38 H 1.09002 * 109.46761 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47154 * 300.00193 * 19 18 17 40 40 H 1.09000 * 109.47037 * 59.99830 * 20 18 17 41 41 H 1.09002 * 109.47259 * 179.97438 * 20 18 17 42 42 H 1.08994 * 109.47589 * 299.99977 * 20 18 17 43 43 H 1.09000 * 109.47542 * 59.99908 * 21 18 17 44 44 H 1.09002 * 109.47481 * 180.02562 * 21 18 17 45 45 H 1.09000 * 109.47034 * 299.99792 * 21 18 17 46 46 H 1.08001 * 120.00053 * 179.97438 * 22 17 16 47 47 H 1.09005 * 109.47378 * 95.46411 * 24 23 13 48 48 H 1.09001 * 109.46850 * 215.46076 * 24 23 13 49 49 H 1.08994 * 109.46931 * 335.46047 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1495 2.0611 -1.1813 5 1 1.9426 3.1203 -1.2207 6 6 2.5484 1.3888 -2.3284 7 7 3.1940 0.2460 -2.2306 8 14 2.1689 2.1061 -4.0110 9 1 1.4401 3.3898 -3.8490 10 1 3.4378 2.3470 -4.7440 11 1 1.3278 1.1521 -4.7775 12 6 2.3664 2.0350 1.2640 13 6 3.8523 1.9289 1.4919 14 6 4.3784 0.8110 2.1119 15 6 3.4659 -0.3014 2.5604 16 6 5.7418 0.7115 2.3167 17 6 6.5782 1.7344 1.9104 18 6 8.0641 1.6283 2.1383 19 6 8.5286 2.7877 3.0221 20 6 8.3804 0.3010 2.8304 21 6 8.7918 1.6887 0.7938 22 6 6.0515 2.8550 1.2956 23 6 4.6886 2.9520 1.0861 24 6 4.1144 4.1737 0.4162 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.4724 -0.2240 -3.0322 31 1 2.0796 3.0858 1.2206 32 1 1.8375 1.5475 2.0829 33 1 3.4302 -1.0740 1.7924 34 1 3.8439 -0.7293 3.4889 35 1 2.4637 0.0946 2.7243 36 1 6.1533 -0.1637 2.7973 37 1 8.0102 2.7447 3.9799 38 1 9.6034 2.7111 3.1866 39 1 8.3033 3.7334 2.5290 40 1 8.0495 -0.5249 2.2007 41 1 9.4552 0.2241 2.9948 42 1 7.8620 0.2580 3.7882 43 1 8.5665 2.6343 0.3008 44 1 9.8666 1.6115 0.9586 45 1 8.4609 0.8627 0.1642 46 1 6.7049 3.6543 0.9785 47 1 3.9583 4.9560 1.1591 48 1 4.8075 4.5297 -0.3461 49 1 3.1621 3.9192 -0.0490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522775658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = 20.662919 kcal Electronic energy + Delta-G solvation = -24678.100349 eV Core-core repulsion = 21604.818068 eV Total energy + Delta-G solvation = -3073.282282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.59261 -37.03529 -35.21455 -32.93433 -31.66349 -30.70761 -28.97136 -27.81488 -27.06538 -26.97210 -25.49924 -24.95242 -23.36350 -21.42640 -19.98609 -19.86113 -18.01530 -16.59359 -15.85034 -15.22654 -14.84569 -14.33083 -14.04580 -13.95927 -13.72181 -13.27374 -13.01951 -12.82391 -12.54092 -12.46746 -12.35192 -12.22693 -12.16981 -11.85529 -11.72211 -11.53224 -11.41603 -11.20680 -11.08628 -11.02339 -10.84634 -10.75780 -10.66426 -10.50228 -10.45483 -10.02497 -9.90088 -9.86715 -9.65055 -9.39323 -8.44714 -7.72815 -7.57382 -6.51343 -5.70274 -3.27980 2.18830 2.20552 3.36567 3.45694 3.47039 4.41186 4.56036 4.90982 5.01387 5.21478 5.37879 5.54718 5.57942 5.61145 5.68181 5.70709 5.76213 5.80495 5.90927 5.92378 6.01256 6.02607 6.06924 6.10043 6.17547 6.21256 6.25186 6.31261 6.34573 6.38061 6.44488 6.46973 6.51947 6.58202 6.60799 6.65881 6.73912 6.85028 6.95111 7.00981 7.10351 7.30145 7.32042 7.38121 7.65317 7.79638 7.88401 7.91190 8.55230 9.23419 9.86351 10.43802 11.26150 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.005675 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.241165 B = 4932.389150 C = 5568.657905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 N -0.571 5.571 4 C -0.248 4.248 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.879 5.879 8 Si 0.890 3.110 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.289 1.289 12 C 0.171 3.829 13 C -0.071 4.071 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.131 4.131 17 C -0.085 4.085 18 C -0.024 4.024 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.061 4.061 24 C -0.120 4.120 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.096 0.904 29 H 0.033 0.967 30 H 0.252 0.748 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 1.698 9.972 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.290 5.290 4 C -0.378 4.378 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.216 1.216 12 C 0.045 3.955 13 C -0.075 4.075 14 C -0.076 4.076 15 C -0.167 4.167 16 C -0.149 4.149 17 C -0.086 4.086 18 C -0.024 4.024 19 C -0.192 4.192 20 C -0.197 4.197 21 C -0.194 4.194 22 C -0.143 4.143 23 C -0.062 4.062 24 C -0.177 4.177 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.387 1.586 9.830 11.829 hybrid contribution 0.057 0.202 -1.173 1.192 sum 6.444 1.788 8.656 10.939 Atomic orbital electron populations 1.22269 1.00947 0.98400 1.00379 1.21211 0.90012 0.86581 1.02251 1.43970 1.72145 1.11972 1.00907 1.18996 1.39470 0.93691 0.85675 0.91993 1.25116 0.97367 0.97838 0.98518 1.69962 1.37459 1.17270 1.27439 0.86420 0.77728 0.78790 0.85051 1.20109 1.21824 1.21567 1.20101 0.88238 0.97306 0.89820 1.20628 0.99031 0.92667 0.95141 1.19563 0.93608 0.95505 0.98904 1.20897 0.98772 0.97051 0.99954 1.20760 0.92802 0.98432 1.02924 1.19416 0.93569 0.95030 1.00578 1.19385 0.92064 0.95496 0.95477 1.21860 1.00082 0.97784 0.99452 1.21919 1.00550 0.96861 1.00375 1.21866 0.98865 1.02372 0.96249 1.20619 0.94518 0.97727 1.01479 1.19579 0.92760 0.96267 0.97615 1.20953 1.03377 0.94385 0.98939 0.95026 0.93238 0.94985 0.88701 0.94905 0.93814 0.93422 0.93425 0.91032 0.93159 0.91469 0.87087 0.92766 0.93039 0.92609 0.92318 0.93071 0.92532 0.92575 0.93104 0.92425 0.87684 0.93095 0.92804 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.21 37.16 0.38 -2.87 16 2 C 0.12 2.87 6.01 -4.04 -0.02 2.85 16 3 N -0.57 -13.59 2.45 -174.61 -0.43 -14.02 16 4 C -0.25 -6.48 8.36 -15.06 -0.13 -6.60 16 5 H 0.06 1.62 6.64 -52.49 -0.35 1.27 16 6 C 0.01 0.33 5.02 -17.43 -0.09 0.24 16 7 N -0.88 -24.99 11.26 55.49 0.62 -24.36 16 8 Si 0.89 21.44 29.60 -169.99 -5.03 16.41 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 C 0.17 3.57 4.92 -5.19 -0.03 3.54 16 13 C -0.07 -1.48 5.41 -104.63 -0.57 -2.05 16 14 C -0.07 -1.45 5.88 -104.62 -0.62 -2.07 16 15 C -0.11 -1.89 8.29 36.01 0.30 -1.59 16 16 C -0.13 -2.35 8.65 -39.58 -0.34 -2.69 16 17 C -0.09 -1.47 4.76 -104.62 -0.50 -1.96 16 18 C -0.02 -0.33 0.85 -155.66 -0.13 -0.47 16 19 C -0.13 -1.62 8.29 37.16 0.31 -1.31 16 20 C -0.14 -1.72 7.13 37.15 0.26 -1.46 16 21 C -0.14 -1.85 8.29 37.16 0.31 -1.55 16 22 C -0.13 -2.30 8.39 -39.58 -0.33 -2.63 16 23 C -0.06 -1.23 5.88 -104.62 -0.62 -1.84 16 24 C -0.12 -2.23 9.35 36.01 0.34 -1.90 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 2.52 5.34 -51.93 -0.28 2.24 16 29 H 0.03 0.70 4.41 -51.93 -0.23 0.47 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.05 0.97 6.33 -51.93 -0.33 0.64 16 32 H 0.05 0.92 5.93 -51.93 -0.31 0.61 16 33 H 0.07 1.32 7.05 -51.93 -0.37 0.95 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.07 1.12 5.23 -51.93 -0.27 0.85 16 36 H 0.11 1.77 5.90 -52.49 -0.31 1.46 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.67 7.39 -51.93 -0.38 0.29 16 40 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 43 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.11 1.75 7.10 -52.49 -0.37 1.37 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 49 H 0.09 1.94 3.70 -51.93 -0.19 1.74 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -28.33 365.60 -9.13 -37.46 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.33 Total: 3.37 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -1.47 Total: -24.36 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.20 Total: -38.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.33 -9.13 -37.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522775658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.122 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds