Wall clock time and date at job start Tue Mar 31 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47093 * 2 1 4 4 C 1.36928 * 120.00481 * 274.98444 * 3 2 1 5 5 H 1.07997 * 120.00866 * 144.53104 * 4 3 2 6 6 C 1.38816 * 119.99829 * 324.53352 * 4 3 2 7 7 N 1.31621 * 119.99807 * 338.59414 * 6 4 3 8 8 Si 1.86800 * 120.00222 * 158.59452 * 6 4 3 9 9 H 1.48500 * 109.47021 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46827 * 119.99674 * 8 6 4 11 11 H 1.48492 * 109.47248 * 239.99974 * 8 6 4 12 12 C 1.46502 * 119.99920 * 94.98358 * 3 2 1 13 13 C 1.50696 * 109.47204 * 96.72392 * 12 3 2 14 14 C 1.38235 * 120.00385 * 273.52797 * 13 12 3 15 15 C 1.50707 * 119.99628 * 359.97438 * 14 13 12 16 16 C 1.38230 * 120.00428 * 179.76533 * 14 13 12 17 17 C 1.38239 * 119.99795 * 0.48128 * 16 14 13 18 18 C 1.50696 * 119.99966 * 179.76535 * 17 16 14 19 19 C 1.53007 * 109.47330 * 240.02446 * 18 17 16 20 20 C 1.52992 * 109.47393 * 0.02763 * 18 17 16 21 21 C 1.53001 * 109.46778 * 120.02963 * 18 17 16 22 22 C 1.38237 * 119.99923 * 359.80017 * 17 16 14 23 23 C 1.38234 * 119.99953 * 93.79838 * 13 12 3 24 24 C 1.50701 * 119.99942 * 0.02562 * 23 13 12 25 25 H 1.09005 * 109.47072 * 299.99477 * 1 2 3 26 26 H 1.08998 * 109.47317 * 59.99799 * 1 2 3 27 27 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46409 * 240.00219 * 2 1 3 29 29 H 1.08997 * 109.46598 * 120.00404 * 2 1 3 30 30 H 0.97003 * 120.00239 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47444 * 216.72676 * 12 3 2 32 32 H 1.09006 * 109.46882 * 336.72761 * 12 3 2 33 33 H 1.09000 * 109.47164 * 95.48795 * 15 14 13 34 34 H 1.09002 * 109.47033 * 215.48337 * 15 14 13 35 35 H 1.08998 * 109.47075 * 335.48354 * 15 14 13 36 36 H 1.07997 * 120.00401 * 180.25490 * 16 14 13 37 37 H 1.08994 * 109.46545 * 60.00701 * 19 18 17 38 38 H 1.09002 * 109.46761 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47154 * 300.00193 * 19 18 17 40 40 H 1.09000 * 109.47037 * 59.99830 * 20 18 17 41 41 H 1.09002 * 109.47259 * 179.97438 * 20 18 17 42 42 H 1.08994 * 109.47589 * 299.99977 * 20 18 17 43 43 H 1.09000 * 109.47542 * 59.99908 * 21 18 17 44 44 H 1.09002 * 109.47481 * 180.02562 * 21 18 17 45 45 H 1.09000 * 109.47034 * 299.99792 * 21 18 17 46 46 H 1.08001 * 120.00053 * 179.97438 * 22 17 16 47 47 H 1.09005 * 109.47378 * 95.46411 * 24 23 13 48 48 H 1.09001 * 109.46850 * 215.46076 * 24 23 13 49 49 H 1.08994 * 109.46931 * 335.46047 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1495 2.0611 -1.1813 5 1 1.9426 3.1203 -1.2207 6 6 2.5484 1.3888 -2.3284 7 7 3.1940 0.2460 -2.2306 8 14 2.1689 2.1061 -4.0110 9 1 1.4401 3.3898 -3.8490 10 1 3.4378 2.3470 -4.7440 11 1 1.3278 1.1521 -4.7775 12 6 2.3664 2.0350 1.2640 13 6 3.8523 1.9289 1.4919 14 6 4.3784 0.8110 2.1119 15 6 3.4659 -0.3014 2.5604 16 6 5.7418 0.7115 2.3167 17 6 6.5782 1.7344 1.9104 18 6 8.0641 1.6283 2.1383 19 6 8.5286 2.7877 3.0221 20 6 8.3804 0.3010 2.8304 21 6 8.7918 1.6887 0.7938 22 6 6.0515 2.8550 1.2956 23 6 4.6886 2.9520 1.0861 24 6 4.1144 4.1737 0.4162 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.4724 -0.2240 -3.0322 31 1 2.0796 3.0858 1.2206 32 1 1.8375 1.5475 2.0829 33 1 3.4302 -1.0740 1.7924 34 1 3.8439 -0.7293 3.4889 35 1 2.4637 0.0946 2.7243 36 1 6.1533 -0.1637 2.7973 37 1 8.0102 2.7447 3.9799 38 1 9.6034 2.7111 3.1866 39 1 8.3033 3.7334 2.5290 40 1 8.0495 -0.5249 2.2007 41 1 9.4552 0.2241 2.9948 42 1 7.8620 0.2580 3.7882 43 1 8.5665 2.6343 0.3008 44 1 9.8666 1.6115 0.9586 45 1 8.4609 0.8627 0.1642 46 1 6.7049 3.6543 0.9785 47 1 3.9583 4.9560 1.1591 48 1 4.8075 4.5297 -0.3461 49 1 3.1621 3.9192 -0.0490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522775658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:26 Heat of formation + Delta-G solvation = 9.363363 kcal Electronic energy + Delta-G solvation = -24678.590335 eV Core-core repulsion = 21604.818068 eV Total energy + Delta-G solvation = -3073.772267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97660 -38.44555 -36.82240 -34.38899 -33.50457 -32.30832 -30.60051 -28.95440 -28.56043 -28.06960 -26.92321 -26.50883 -25.09478 -22.94666 -21.64497 -21.30520 -19.31247 -18.46512 -17.27372 -16.71511 -16.62672 -15.96838 -15.53750 -15.31047 -15.09037 -14.60121 -14.45109 -14.28970 -14.04944 -13.94239 -13.83369 -13.73801 -13.35310 -13.23395 -13.13716 -12.93785 -12.78749 -12.73522 -12.54772 -12.51788 -12.31342 -12.29643 -12.14945 -11.97300 -11.87145 -11.65936 -11.46686 -11.32328 -11.21142 -11.07716 -10.44927 -9.17866 -9.05362 -8.45563 -7.70592 -5.31373 0.73010 0.74989 1.42670 1.47166 1.54897 2.53946 3.00386 3.33974 3.77435 3.90758 3.92743 4.16696 4.18296 4.23236 4.38116 4.41873 4.51072 4.60507 4.64523 4.74380 4.77003 4.78857 4.80210 4.82853 4.89765 4.91888 4.94829 4.98206 5.01211 5.02982 5.04720 5.09767 5.12549 5.20684 5.22707 5.31042 5.34409 5.42369 5.48822 5.54884 5.58616 5.62922 5.76549 5.90901 5.92161 6.00175 6.15012 6.45251 6.54152 7.25563 7.95415 8.47234 9.21783 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.005675 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.241165 B = 4932.389150 C = 5568.657905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.122 3.878 3 N -0.582 5.582 4 C -0.239 4.239 5 H 0.059 0.941 6 C -0.036 4.036 7 N -0.910 5.910 8 Si 0.941 3.059 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.293 1.293 12 C 0.175 3.825 13 C -0.099 4.099 14 C -0.090 4.090 15 C -0.104 4.104 16 C -0.142 4.142 17 C -0.081 4.081 18 C -0.026 4.026 19 C -0.130 4.130 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.083 4.083 24 C -0.114 4.114 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.244 0.756 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.119 0.881 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 2.040 11.638 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.003 4.003 3 N -0.302 5.302 4 C -0.370 4.370 5 H 0.076 0.924 6 C -0.233 4.233 7 N -0.555 5.555 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.226 1.226 11 H -0.220 1.220 12 C 0.050 3.950 13 C -0.102 4.102 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.082 4.082 18 C -0.026 4.026 19 C -0.187 4.187 20 C -0.195 4.195 21 C -0.192 4.192 22 C -0.155 4.155 23 C -0.083 4.083 24 C -0.171 4.171 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.137 0.863 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.427 1.948 11.516 13.841 hybrid contribution -0.214 0.124 -1.580 1.599 sum 7.214 2.072 9.936 12.452 Atomic orbital electron populations 1.22111 0.98828 0.99782 1.00080 1.21160 0.91683 0.86184 1.01269 1.44094 1.72702 1.12097 1.01266 1.19149 1.37565 0.93559 0.86701 0.92355 1.25654 0.98188 0.98458 1.01045 1.70106 1.39428 1.18612 1.27371 0.85607 0.76993 0.78388 0.81927 1.19117 1.22628 1.21982 1.20095 0.89004 0.97092 0.88850 1.20661 0.98731 0.93848 0.96980 1.19921 0.94784 0.95653 0.98743 1.20843 0.98639 0.95932 1.00617 1.21082 0.92483 0.99371 1.03048 1.19875 0.95649 0.94005 0.98633 1.19492 0.89658 0.97302 0.96162 1.21821 1.01514 0.96598 0.98801 1.21901 1.02141 0.95366 1.00085 1.21857 1.00505 1.01118 0.95725 1.20841 0.94118 0.98762 1.01790 1.19890 0.93738 0.96731 0.97983 1.20877 1.01955 0.94800 0.99431 0.93453 0.95234 0.92799 0.92174 0.93464 0.94631 0.93423 0.91923 0.92691 0.90322 0.91363 0.85142 0.92756 0.90749 0.92960 0.93457 0.90812 0.92011 0.93236 0.90446 0.94505 0.86349 0.90647 0.92687 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 10.21 71.98 0.74 -5.17 16 2 C 0.12 5.65 6.01 86.38 0.52 6.17 16 3 N -0.58 -27.90 2.45 -706.34 -1.73 -29.63 16 4 C -0.24 -12.64 8.36 84.04 0.70 -11.93 16 5 H 0.06 3.09 6.64 -2.91 -0.02 3.07 16 6 C -0.04 -2.01 5.02 84.86 0.43 -1.58 16 7 N -0.91 -53.28 11.26 21.65 0.24 -53.04 16 8 Si 0.94 44.99 29.60 68.60 2.03 47.02 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 C 0.17 7.25 4.92 85.63 0.42 7.67 16 13 C -0.10 -4.10 5.41 -19.87 -0.11 -4.21 16 14 C -0.09 -3.44 5.88 -19.86 -0.12 -3.56 16 15 C -0.10 -3.43 8.29 71.24 0.59 -2.84 16 16 C -0.14 -4.92 8.65 22.27 0.19 -4.73 16 17 C -0.08 -2.68 4.76 -19.87 -0.09 -2.78 16 18 C -0.03 -0.66 0.85 -52.93 -0.05 -0.71 16 19 C -0.13 -2.74 8.29 71.98 0.60 -2.14 16 20 C -0.14 -3.01 7.13 71.98 0.51 -2.50 16 21 C -0.13 -3.42 8.29 71.98 0.60 -2.82 16 22 C -0.14 -4.93 8.39 22.27 0.19 -4.74 16 23 C -0.08 -3.30 5.88 -19.87 -0.12 -3.42 16 24 C -0.11 -4.23 9.35 71.24 0.67 -3.56 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 3.28 5.34 -2.39 -0.01 3.26 16 29 H 0.05 2.00 4.41 -2.39 -0.01 1.99 16 30 H 0.24 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.05 1.95 6.33 -2.38 -0.02 1.93 16 32 H 0.06 2.35 5.93 -2.38 -0.01 2.34 16 33 H 0.05 2.00 7.05 -2.39 -0.02 1.98 16 34 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 35 H 0.07 2.19 5.23 -2.39 -0.01 2.18 16 36 H 0.13 3.91 5.90 -2.91 -0.02 3.89 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.13 7.39 -2.39 -0.02 1.11 16 40 H 0.05 1.13 7.51 -2.39 -0.02 1.12 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.28 7.51 -2.39 -0.02 1.26 16 43 H 0.05 1.30 7.39 -2.39 -0.02 1.28 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 3.82 7.10 -2.91 -0.02 3.80 16 47 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 48 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.07 2.92 3.70 -2.39 -0.01 2.92 16 Total: -1.00 -61.54 365.60 7.13 -54.41 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.92 Total: 24.08 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 5.67 Total: -42.84 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.49 Total: -82.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -61.54 7.13 -54.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522775658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.773 kcal (2) G-P(sol) polarization free energy of solvation -61.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds