Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47436 * 2 1 4 4 C 1.52997 * 109.47306 * 173.96364 * 3 2 1 5 5 H 1.08994 * 109.47206 * 299.86342 * 4 3 2 6 6 C 1.53005 * 109.47050 * 179.86164 * 4 3 2 7 7 C 1.50698 * 109.46763 * 175.00030 * 6 4 3 8 8 C 1.38240 * 120.00144 * 269.72134 * 7 6 4 9 9 C 1.38229 * 120.00040 * 180.32628 * 8 7 6 10 10 C 1.38235 * 120.00195 * 359.95749 * 9 8 7 11 11 C 1.38238 * 120.00067 * 0.02562 * 10 9 8 12 12 C 1.38235 * 120.00032 * 90.00512 * 7 6 4 13 13 N 1.46904 * 109.46834 * 59.86528 * 4 3 2 14 14 C 1.46898 * 110.99780 * 272.31012 * 13 4 3 15 15 C 1.50696 * 109.47311 * 282.92693 * 14 13 4 16 16 H 1.08004 * 120.00264 * 4.62198 * 15 14 13 17 17 C 1.37881 * 120.00007 * 184.61621 * 15 14 13 18 18 N 1.31516 * 119.99903 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46813 * 120.00406 * 19 17 15 22 22 H 1.48500 * 109.47163 * 240.00181 * 19 17 15 23 23 C 1.46899 * 111.00064 * 36.26973 * 13 4 3 24 24 C 1.53004 * 109.46927 * 163.59142 * 23 13 4 25 25 C 1.53001 * 109.47058 * 185.29658 * 24 23 13 26 26 H 1.08996 * 109.47535 * 300.00924 * 1 2 3 27 27 H 1.09006 * 109.46557 * 60.00635 * 1 2 3 28 28 H 1.09001 * 109.47394 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47767 * 239.99515 * 2 1 3 30 30 H 1.09006 * 109.46557 * 119.99364 * 2 1 3 31 31 H 1.09002 * 109.47016 * 53.96167 * 3 2 1 32 32 H 1.09001 * 109.46641 * 293.96811 * 3 2 1 33 33 H 1.09005 * 109.46806 * 55.00042 * 6 4 3 34 34 H 1.08994 * 109.47175 * 295.00312 * 6 4 3 35 35 H 1.07997 * 119.99654 * 0.28533 * 8 7 6 36 36 H 1.08001 * 119.99746 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.00169 * 180.02562 * 10 9 8 38 38 H 1.07991 * 120.00397 * 179.97438 * 11 10 9 39 39 H 1.08005 * 119.99562 * 359.71918 * 12 7 6 40 40 H 1.08994 * 109.47260 * 42.93155 * 14 13 4 41 41 H 1.09003 * 109.47160 * 162.92939 * 14 13 4 42 42 H 0.96993 * 119.99764 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.46713 * 283.58863 * 23 13 4 44 44 H 1.08999 * 109.47183 * 43.58842 * 23 13 4 45 45 H 1.08990 * 109.47047 * 305.30172 * 24 23 13 46 46 H 1.09004 * 109.46846 * 65.30211 * 24 23 13 47 47 H 1.08992 * 109.47195 * 300.00484 * 25 24 23 48 48 H 1.09004 * 109.46464 * 60.00161 * 25 24 23 49 49 H 1.08995 * 109.47243 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5625 1.4451 0.1517 5 1 3.8348 0.9656 1.0919 6 6 4.0729 2.8876 0.1482 7 6 5.5551 2.8965 0.4202 8 6 6.0189 2.9857 1.7194 9 6 7.3785 3.0007 1.9683 10 6 8.2744 2.9256 0.9182 11 6 7.8106 2.8361 -0.3809 12 6 6.4509 2.8214 -0.6299 13 7 4.1672 0.7091 -0.9666 14 6 4.2633 -0.7248 -0.6623 15 6 5.4201 -0.9634 0.2736 16 1 5.9772 -0.1263 0.6679 17 6 5.7673 -2.2502 0.6265 18 7 5.0892 -3.2695 0.1460 19 14 7.2017 -2.5459 1.7861 20 1 7.7950 -1.2434 2.1817 21 1 6.7205 -3.2585 2.9969 22 1 8.2294 -3.3711 1.1018 23 6 3.4195 0.9344 -2.2108 24 6 4.2767 0.5098 -3.4049 25 6 3.5526 0.8659 -4.7048 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 1.5912 1.9866 0.8310 32 1 1.7676 1.9242 -0.9391 33 1 3.5580 3.4570 0.9221 34 1 3.8792 3.3391 -0.8247 35 1 5.3190 3.0443 2.5398 36 1 7.7409 3.0708 2.9833 37 1 9.3367 2.9369 1.1128 38 1 8.5104 2.7779 -1.2013 39 1 6.0885 2.7518 -1.6449 40 1 3.3393 -1.0588 -0.1904 41 1 4.4219 -1.2823 -1.5855 42 1 5.3337 -4.1748 0.3940 43 1 2.5019 0.3462 -2.1948 44 1 3.1716 1.9921 -2.2993 45 1 5.2340 1.0295 -3.3681 46 1 4.4458 -0.5664 -3.3664 47 1 2.5953 0.3462 -4.7416 48 1 3.3835 1.9421 -4.7433 49 1 4.1634 0.5639 -5.5555 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524070140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -3.433098 kcal Electronic energy + Delta-G solvation = -24708.762847 eV Core-core repulsion = 21634.435684 eV Total energy + Delta-G solvation = -3074.327163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59277 -39.33420 -35.38837 -34.85218 -34.19619 -32.81384 -31.54516 -30.43595 -28.73165 -27.04345 -26.03532 -24.41001 -23.25661 -22.86582 -21.84934 -21.68965 -20.21602 -18.40754 -17.44580 -16.99706 -16.60382 -16.11482 -16.03299 -15.63271 -15.48513 -15.18512 -14.84490 -14.34487 -14.12036 -14.06162 -13.87586 -13.69254 -13.39844 -13.31142 -13.10432 -12.89533 -12.67439 -12.61775 -12.49557 -12.39293 -12.22562 -12.00539 -11.84589 -11.74685 -11.64143 -11.54918 -11.47857 -11.25554 -11.11140 -10.96695 -10.48174 -9.57936 -9.30075 -8.59398 -8.08974 -6.14047 0.70333 0.75864 1.34605 1.37094 1.49879 2.43112 3.10193 3.21538 3.43667 3.91778 4.10809 4.13539 4.17089 4.21242 4.28698 4.34958 4.37270 4.44039 4.50871 4.66745 4.71592 4.71988 4.77345 4.80254 4.84369 4.86127 4.94084 4.98106 5.03956 5.06280 5.14328 5.18703 5.26314 5.28037 5.33304 5.38257 5.41572 5.45246 5.46778 5.54756 5.59049 5.60527 5.77032 5.80962 5.82339 6.01363 6.27595 6.37587 6.66827 6.89856 7.04202 7.53041 8.99394 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.007808 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.514479 B = 3585.004034 C = 4725.349223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C -0.134 4.134 4 C 0.095 3.905 5 H 0.048 0.952 6 C -0.060 4.060 7 C -0.065 4.065 8 C -0.136 4.136 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.097 4.097 13 N -0.523 5.523 14 C 0.195 3.805 15 C -0.490 4.490 16 H 0.052 0.948 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.284 1.284 23 C 0.055 3.945 24 C -0.117 4.117 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.118 0.882 40 H -0.002 1.002 41 H -0.004 1.004 42 H 0.258 0.742 43 H 0.026 0.974 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.028 0.972 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 14.427 -2.207 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.173 4.173 4 C -0.014 4.014 5 H 0.067 0.933 6 C -0.098 4.098 7 C -0.065 4.065 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.161 4.161 11 C -0.155 4.155 12 C -0.115 4.115 13 N -0.246 5.246 14 C 0.069 3.931 15 C -0.529 4.529 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.578 5.578 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.073 4.073 24 C -0.155 4.155 25 C -0.196 4.196 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.447 14.429 -2.263 15.007 hybrid contribution 0.257 -1.534 0.789 1.744 sum -3.190 12.895 -1.474 13.365 Atomic orbital electron populations 1.21724 0.94357 1.01384 1.02373 1.21784 0.96730 0.97430 1.00625 1.22221 0.95761 0.96182 1.03087 1.21597 0.91642 0.93798 0.94413 0.93335 1.20621 0.90951 0.95517 1.02669 1.19870 0.96232 0.97403 0.93006 1.21214 0.95989 1.01560 0.96677 1.21287 0.93608 1.01091 0.99519 1.21288 1.00129 1.01656 0.93074 1.21329 0.96074 1.00766 0.97290 1.21034 0.92975 0.98296 0.99168 1.62142 1.50152 1.10350 1.01974 1.19697 0.95092 0.84087 0.94217 1.21500 1.14342 0.91390 1.25680 0.92928 1.25643 0.99122 0.96273 0.98325 1.70072 1.42262 0.98716 1.46767 0.85695 0.80095 0.78025 0.79072 1.19292 1.20839 1.21013 1.22237 0.94587 1.00409 0.90043 1.21469 0.99447 0.99581 0.94967 1.21662 1.00004 1.02000 0.95927 0.91846 0.91686 0.93561 0.93119 0.94838 0.90530 0.90297 0.89647 0.90323 0.85722 0.85184 0.85159 0.85532 0.86359 0.98455 0.98607 0.93355 0.95583 0.89929 0.92420 0.95332 0.92989 0.91282 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.31 4.05 30.59 0.12 -4.19 16 3 C -0.13 -3.85 4.18 30.59 0.13 -3.72 16 4 C 0.09 3.27 1.81 44.92 0.08 3.35 16 5 H 0.05 2.06 7.29 -2.39 -0.02 2.04 16 6 C -0.06 -1.71 4.93 29.85 0.15 -1.56 16 7 C -0.07 -2.13 4.95 -19.87 -0.10 -2.23 16 8 C -0.14 -4.37 9.70 22.27 0.22 -4.16 16 9 C -0.14 -4.25 10.05 22.27 0.22 -4.02 16 10 C -0.14 -4.43 10.05 22.27 0.22 -4.20 16 11 C -0.14 -4.38 10.05 22.27 0.22 -4.15 16 12 C -0.10 -3.24 9.31 22.27 0.21 -3.03 16 13 N -0.52 -20.62 3.58 -875.53 -3.14 -23.75 16 14 C 0.20 9.94 3.91 85.56 0.33 10.27 16 15 C -0.49 -27.75 8.61 25.60 0.22 -27.53 16 16 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 19 Si 0.94 46.34 29.54 68.60 2.03 48.37 16 20 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 23 C 0.06 1.81 3.40 86.30 0.29 2.11 16 24 C -0.12 -3.85 5.92 30.60 0.18 -3.67 16 25 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.96 4.25 -2.39 -0.01 1.95 16 30 H 0.03 1.33 7.50 -2.38 -0.02 1.31 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 2.00 6.30 -2.39 -0.02 1.98 16 33 H 0.09 2.04 8.08 -2.38 -0.02 2.02 16 34 H 0.08 2.02 7.14 -2.39 -0.02 2.00 16 35 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.13 3.52 8.06 -2.92 -0.02 3.50 16 39 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.00 -0.11 4.31 -2.39 -0.01 -0.12 16 41 H 0.00 -0.24 6.34 -2.39 -0.02 -0.25 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.03 0.90 5.31 -2.39 -0.01 0.89 16 44 H 0.08 2.27 6.27 -2.39 -0.01 2.26 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.03 1.13 6.73 -2.39 -0.02 1.11 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.74 374.97 4.46 -60.28 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.89 Total: 23.66 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 4.39 Total: -51.75 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.85 Total: -80.56 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -64.74 4.46 -60.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524070140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.851 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds