Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 120.00047 * 2 1 4 4 C 1.38211 * 119.99894 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.00008 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99834 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99931 * 0.25150 * 5 4 3 8 8 C 1.50700 * 120.00127 * 179.72341 * 7 5 4 9 9 N 1.46896 * 109.46999 * 73.81907 * 8 7 5 10 10 C 1.46902 * 111.00126 * 190.32861 * 9 8 7 11 11 C 1.50699 * 109.47376 * 169.97747 * 10 9 8 12 12 H 1.08009 * 119.99960 * 2.13267 * 11 10 9 13 13 C 1.37876 * 120.00248 * 182.13278 * 11 10 9 14 14 N 1.31509 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00064 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46753 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47173 * 119.99736 * 15 13 11 18 18 H 1.48494 * 109.46856 * 239.99991 * 15 13 11 19 19 C 1.46905 * 111.00019 * 66.38025 * 9 8 7 20 20 C 1.52998 * 109.47059 * 80.55544 * 19 9 8 21 21 C 1.52996 * 109.46919 * 77.77757 * 20 19 9 22 22 C 1.53005 * 109.46868 * 197.77360 * 20 19 9 23 23 C 1.52997 * 109.47275 * 317.77639 * 20 19 9 24 24 C 1.38216 * 119.99956 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47667 * 89.99615 * 1 2 3 26 26 H 1.09001 * 109.47068 * 209.99786 * 1 2 3 27 27 H 1.09004 * 109.47241 * 329.99418 * 1 2 3 28 28 H 1.07995 * 120.00156 * 359.97438 * 3 2 1 29 29 H 1.08005 * 120.00081 * 179.97438 * 4 3 2 30 30 H 1.09008 * 109.47173 * 90.00548 * 6 5 4 31 31 H 1.08990 * 109.47514 * 330.00020 * 6 5 4 32 32 H 1.08998 * 109.47137 * 210.00054 * 6 5 4 33 33 H 1.09000 * 109.47586 * 193.82329 * 8 7 5 34 34 H 1.09009 * 109.47256 * 313.82379 * 8 7 5 35 35 H 1.09002 * 109.47431 * 289.98066 * 10 9 8 36 36 H 1.09004 * 109.46889 * 49.98295 * 10 9 8 37 37 H 0.97000 * 120.00467 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47319 * 200.55902 * 19 9 8 39 39 H 1.09001 * 109.46463 * 320.56138 * 19 9 8 40 40 H 1.08997 * 109.47648 * 22.19862 * 21 20 19 41 41 H 1.08999 * 109.47474 * 142.20188 * 21 20 19 42 42 H 1.09003 * 109.46950 * 262.19575 * 21 20 19 43 43 H 1.09001 * 109.46984 * 60.00532 * 22 20 19 44 44 H 1.09001 * 109.46794 * 179.97438 * 22 20 19 45 45 H 1.08997 * 109.47171 * 299.99976 * 22 20 19 46 46 H 1.08993 * 109.47570 * 63.21817 * 23 20 19 47 47 H 1.09004 * 109.46994 * 183.22085 * 23 20 19 48 48 H 1.09001 * 109.47262 * 303.21436 * 23 20 19 49 49 H 1.08005 * 119.99811 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 -0.0001 -0.0016 6 6 5.7786 -0.0001 -0.0028 7 6 3.5805 -1.1970 -0.0074 8 6 4.3340 -2.5021 -0.0149 9 7 4.9140 -2.7402 1.3135 10 6 5.8535 -3.8691 1.2832 11 6 6.6080 -3.9300 2.5862 12 1 6.3853 -3.2241 3.3727 13 6 7.5827 -4.8869 2.7744 14 7 7.8536 -5.7468 1.8170 15 14 8.5175 -4.9628 4.3900 16 1 8.0272 -3.8934 5.2962 17 1 8.3018 -6.2878 5.0250 18 1 9.9669 -4.7672 4.1328 19 6 3.8624 -2.9575 2.3160 20 6 3.3674 -4.4027 2.2308 21 6 4.3755 -5.3281 2.9150 22 6 2.0115 -4.5194 2.9302 23 6 3.2201 -4.8056 0.7623 24 6 2.1980 -1.1970 0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 6.1428 -0.0006 1.0247 31 1 6.1416 0.8900 -0.5164 32 1 6.1416 -0.8898 -0.5173 33 1 3.6513 -3.3144 -0.2642 34 1 5.1314 -2.4571 -0.7567 35 1 5.3011 -4.7978 1.1394 36 1 6.5573 -3.7341 0.4618 37 1 8.5391 -6.4202 1.9496 38 1 4.2647 -2.7692 3.3114 39 1 3.0323 -2.2773 2.1249 40 1 4.9752 -4.7537 3.6210 41 1 3.8425 -6.1156 3.4477 42 1 5.0270 -5.7745 2.1637 43 1 1.2933 -3.8600 2.4428 44 1 1.6587 -5.5489 2.8692 45 1 2.1165 -4.2323 3.9765 46 1 4.1962 -4.7775 0.2781 47 1 2.8133 -5.8151 0.7015 48 1 2.5457 -4.1115 0.2609 49 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524811607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = 53.749694 kcal Electronic energy + Delta-G solvation = -24949.051554 eV Core-core repulsion = 21877.204023 eV Total energy + Delta-G solvation = -3071.847531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98191 -38.55674 -34.26087 -33.14825 -32.70407 -30.87934 -29.00044 -27.87288 -27.63938 -25.98689 -25.49427 -24.49942 -23.68875 -21.71534 -20.64853 -19.37484 -18.14708 -16.37843 -15.61903 -15.55909 -15.12118 -14.71794 -14.68175 -14.21420 -13.69197 -13.62810 -13.39466 -13.13409 -12.77481 -12.65430 -12.49747 -12.38468 -12.12456 -11.64455 -11.57101 -11.28283 -11.22294 -11.13769 -11.05609 -10.83527 -10.80500 -10.71917 -10.69239 -10.41628 -10.28752 -10.06401 -9.76642 -9.55374 -9.31424 -9.06152 -8.45846 -8.32741 -8.04349 -6.83461 -5.98430 -3.91492 1.66397 1.69118 3.31786 3.40624 3.44338 4.00975 4.46795 4.97644 5.02565 5.20832 5.25358 5.33139 5.35755 5.39792 5.49117 5.52481 5.61270 5.68464 5.71130 5.81892 5.85486 6.00958 6.02073 6.05037 6.08337 6.18614 6.24533 6.25466 6.30260 6.37572 6.40948 6.48467 6.54595 6.66699 6.71451 6.76327 6.82318 6.85473 6.88237 7.03496 7.13156 7.20358 7.36067 7.37327 7.52046 7.84613 7.87180 8.18063 8.32431 8.64191 9.08400 9.64769 11.11923 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005363 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.680976 B = 5220.127401 C = 6082.047719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.125 4.125 5 C -0.064 4.064 6 C -0.106 4.106 7 C -0.058 4.058 8 C 0.051 3.949 9 N -0.522 5.522 10 C 0.157 3.843 11 C -0.483 4.483 12 H 0.060 0.940 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.078 3.922 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.133 4.133 23 C -0.163 4.163 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.021 0.979 37 H 0.258 0.742 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.013 0.987 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 8.454 -3.901 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.143 4.143 5 C -0.064 4.064 6 C -0.163 4.163 7 C -0.059 4.059 8 C -0.076 4.076 9 N -0.244 5.244 10 C 0.033 3.967 11 C -0.522 4.522 12 H 0.078 0.922 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.050 4.050 20 C -0.095 4.095 21 C -0.201 4.201 22 C -0.191 4.191 23 C -0.219 4.219 24 C -0.132 4.132 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.032 0.968 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.681 8.722 -3.806 15.067 hybrid contribution 0.128 -0.787 0.714 1.071 sum -11.553 7.935 -3.091 14.353 Atomic orbital electron populations 1.20723 0.91850 1.02288 1.01732 1.19758 0.95514 0.93274 1.01674 1.20851 0.94167 0.96992 1.02564 1.20969 0.94010 0.97421 1.01878 1.19813 0.96446 0.92205 0.97940 1.20726 0.90831 1.01549 1.03156 1.19890 0.92924 0.95338 0.97733 1.21861 0.98249 0.93383 0.94142 1.62349 1.15058 1.44598 1.02434 1.20669 0.90290 0.87998 0.97719 1.21027 1.17599 1.13795 0.99767 0.92199 1.24844 0.97190 0.96033 0.96425 1.69931 1.32894 1.18733 1.32317 0.86635 0.79934 0.77737 0.84344 1.19805 1.21256 1.21248 1.22142 0.93066 0.92611 0.97226 1.21121 0.95133 0.98457 0.94792 1.22588 0.97334 0.97793 1.02349 1.21863 0.96751 1.00374 1.00122 1.22743 1.02650 0.99509 0.97009 1.20903 0.93733 0.97078 1.01515 0.91744 0.91887 0.92038 0.86943 0.86706 0.90274 0.93234 0.91054 0.91421 0.90977 0.94306 0.96041 0.93178 0.91332 0.93101 0.89568 0.96762 0.89737 0.93879 0.93573 0.93122 0.89573 0.93969 0.93283 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.10 -1.35 5.88 -104.62 -0.62 -1.96 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 5 C -0.06 -0.99 5.88 -104.62 -0.62 -1.61 16 6 C -0.11 -1.63 9.46 36.00 0.34 -1.29 16 7 C -0.06 -0.94 4.50 -104.63 -0.47 -1.41 16 8 C 0.05 0.89 3.79 -4.98 -0.02 0.87 16 9 N -0.52 -10.42 4.51 -237.51 -1.07 -11.49 16 10 C 0.16 3.70 3.65 -4.98 -0.02 3.68 16 11 C -0.48 -12.43 5.23 -34.44 -0.18 -12.61 16 12 H 0.06 1.59 7.02 -52.48 -0.37 1.22 16 13 C 0.06 1.48 5.20 -17.82 -0.09 1.38 16 14 N -0.90 -25.14 13.29 55.43 0.74 -24.40 16 15 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.08 1.47 4.59 -3.82 -0.02 1.46 16 20 C -0.09 -1.66 0.77 -154.51 -0.12 -1.78 16 21 C -0.14 -2.99 7.23 37.16 0.27 -2.72 16 22 C -0.13 -2.03 8.17 37.16 0.30 -1.73 16 23 C -0.16 -2.78 6.33 37.16 0.24 -2.54 16 24 C -0.11 -1.66 8.28 -39.58 -0.33 -1.99 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.07 1.17 6.26 -51.93 -0.32 0.85 16 33 H 0.07 1.14 3.04 -51.93 -0.16 0.98 16 34 H 0.07 1.30 6.52 -51.92 -0.34 0.96 16 35 H 0.04 0.94 2.09 -51.93 -0.11 0.83 16 36 H 0.02 0.56 7.93 -51.93 -0.41 0.15 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.07 1.41 6.88 -51.93 -0.36 1.06 16 39 H 0.05 0.91 5.92 -51.93 -0.31 0.60 16 40 H 0.09 1.96 5.09 -51.93 -0.26 1.69 16 41 H 0.01 0.26 7.72 -51.93 -0.40 -0.14 16 42 H 0.08 2.00 5.15 -51.93 -0.27 1.73 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.65 3.81 -51.93 -0.20 1.45 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.76 5.70 -51.93 -0.30 0.46 16 49 H 0.11 1.57 7.19 -52.48 -0.38 1.19 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -26.87 354.87 -9.70 -36.56 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.95 Total: 5.11 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -1.73 Total: -27.15 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.34 Total: -35.89 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.87 -9.70 -36.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.313 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds