Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 120.00047 * 2 1 4 4 C 1.38211 * 119.99894 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.00008 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99834 * 179.97438 * 5 4 3 7 7 C 1.38212 * 119.99931 * 0.25150 * 5 4 3 8 8 C 1.50700 * 120.00127 * 179.72341 * 7 5 4 9 9 N 1.46896 * 109.46999 * 73.81907 * 8 7 5 10 10 C 1.46902 * 111.00126 * 190.32861 * 9 8 7 11 11 C 1.50699 * 109.47376 * 169.97747 * 10 9 8 12 12 H 1.08009 * 119.99960 * 2.13267 * 11 10 9 13 13 C 1.37876 * 120.00248 * 182.13278 * 11 10 9 14 14 N 1.31509 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00064 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46753 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47173 * 119.99736 * 15 13 11 18 18 H 1.48494 * 109.46856 * 239.99991 * 15 13 11 19 19 C 1.46905 * 111.00019 * 66.38025 * 9 8 7 20 20 C 1.52998 * 109.47059 * 80.55544 * 19 9 8 21 21 C 1.52996 * 109.46919 * 77.77757 * 20 19 9 22 22 C 1.53005 * 109.46868 * 197.77360 * 20 19 9 23 23 C 1.52997 * 109.47275 * 317.77639 * 20 19 9 24 24 C 1.38216 * 119.99956 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47667 * 89.99615 * 1 2 3 26 26 H 1.09001 * 109.47068 * 209.99786 * 1 2 3 27 27 H 1.09004 * 109.47241 * 329.99418 * 1 2 3 28 28 H 1.07995 * 120.00156 * 359.97438 * 3 2 1 29 29 H 1.08005 * 120.00081 * 179.97438 * 4 3 2 30 30 H 1.09008 * 109.47173 * 90.00548 * 6 5 4 31 31 H 1.08990 * 109.47514 * 330.00020 * 6 5 4 32 32 H 1.08998 * 109.47137 * 210.00054 * 6 5 4 33 33 H 1.09000 * 109.47586 * 193.82329 * 8 7 5 34 34 H 1.09009 * 109.47256 * 313.82379 * 8 7 5 35 35 H 1.09002 * 109.47431 * 289.98066 * 10 9 8 36 36 H 1.09004 * 109.46889 * 49.98295 * 10 9 8 37 37 H 0.97000 * 120.00467 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47319 * 200.55902 * 19 9 8 39 39 H 1.09001 * 109.46463 * 320.56138 * 19 9 8 40 40 H 1.08997 * 109.47648 * 22.19862 * 21 20 19 41 41 H 1.08999 * 109.47474 * 142.20188 * 21 20 19 42 42 H 1.09003 * 109.46950 * 262.19575 * 21 20 19 43 43 H 1.09001 * 109.46984 * 60.00532 * 22 20 19 44 44 H 1.09001 * 109.46794 * 179.97438 * 22 20 19 45 45 H 1.08997 * 109.47171 * 299.99976 * 22 20 19 46 46 H 1.08993 * 109.47570 * 63.21817 * 23 20 19 47 47 H 1.09004 * 109.46994 * 183.22085 * 23 20 19 48 48 H 1.09001 * 109.47262 * 303.21436 * 23 20 19 49 49 H 1.08005 * 119.99811 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 -0.0001 -0.0016 6 6 5.7786 -0.0001 -0.0028 7 6 3.5805 -1.1970 -0.0074 8 6 4.3340 -2.5021 -0.0149 9 7 4.9140 -2.7402 1.3135 10 6 5.8535 -3.8691 1.2832 11 6 6.6080 -3.9300 2.5862 12 1 6.3853 -3.2241 3.3727 13 6 7.5827 -4.8869 2.7744 14 7 7.8536 -5.7468 1.8170 15 14 8.5175 -4.9628 4.3900 16 1 8.0272 -3.8934 5.2962 17 1 8.3018 -6.2878 5.0250 18 1 9.9669 -4.7672 4.1328 19 6 3.8624 -2.9575 2.3160 20 6 3.3674 -4.4027 2.2308 21 6 4.3755 -5.3281 2.9150 22 6 2.0115 -4.5194 2.9302 23 6 3.2201 -4.8056 0.7623 24 6 2.1980 -1.1970 0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 6.1428 -0.0006 1.0247 31 1 6.1416 0.8900 -0.5164 32 1 6.1416 -0.8898 -0.5173 33 1 3.6513 -3.3144 -0.2642 34 1 5.1314 -2.4571 -0.7567 35 1 5.3011 -4.7978 1.1394 36 1 6.5573 -3.7341 0.4618 37 1 8.5391 -6.4202 1.9496 38 1 4.2647 -2.7692 3.3114 39 1 3.0323 -2.2773 2.1249 40 1 4.9752 -4.7537 3.6210 41 1 3.8425 -6.1156 3.4477 42 1 5.0270 -5.7745 2.1637 43 1 1.2933 -3.8600 2.4428 44 1 1.6587 -5.5489 2.8692 45 1 2.1165 -4.2323 3.9765 46 1 4.1962 -4.7775 0.2781 47 1 2.8133 -5.8151 0.7015 48 1 2.5457 -4.1115 0.2609 49 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524811607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = 41.039398 kcal Electronic energy + Delta-G solvation = -24949.602714 eV Core-core repulsion = 21877.204023 eV Total energy + Delta-G solvation = -3072.398691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36236 -39.84149 -35.52682 -34.93105 -34.13424 -32.25314 -30.04427 -29.59824 -29.07538 -27.41096 -27.02479 -25.74628 -25.25732 -22.94371 -22.20328 -20.61116 -19.63869 -18.35833 -16.94976 -16.89836 -16.54219 -16.17845 -16.01669 -15.95399 -14.97905 -14.92675 -14.69756 -14.36380 -14.11830 -13.96474 -13.78168 -13.51968 -13.37240 -13.11159 -12.92867 -12.82102 -12.68842 -12.62574 -12.53891 -12.34810 -12.31828 -12.22899 -12.05540 -12.04476 -11.69679 -11.52800 -11.40794 -11.16381 -11.03565 -10.88109 -10.40691 -9.57394 -9.15019 -8.47349 -8.05541 -6.04069 0.56746 0.59278 1.39028 1.42832 1.52299 2.46227 2.90054 3.26518 3.61932 3.97932 4.00580 4.07512 4.10785 4.14639 4.24406 4.26552 4.43855 4.51948 4.60340 4.74142 4.76539 4.80004 4.82573 4.85048 4.90636 4.92049 4.95893 4.97511 5.03148 5.06402 5.15635 5.18345 5.23205 5.26169 5.26888 5.36482 5.45602 5.49046 5.53329 5.57264 5.66465 5.71406 5.79847 5.83730 5.97727 6.05195 6.25408 6.28605 6.58543 6.84858 7.03133 7.55408 9.03617 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005363 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.680976 B = 5220.127401 C = 6082.047719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.086 4.086 6 C -0.099 4.099 7 C -0.076 4.076 8 C 0.058 3.942 9 N -0.530 5.530 10 C 0.172 3.828 11 C -0.479 4.479 12 H 0.049 0.951 13 C 0.012 3.988 14 N -0.929 5.929 15 Si 0.939 3.061 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.286 1.286 19 C 0.085 3.915 20 C -0.091 4.091 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.156 4.156 24 C -0.122 4.122 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.042 0.958 36 H -0.017 1.017 37 H 0.258 0.742 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.070 0.930 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.997 9.896 -3.589 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.087 4.087 6 C -0.156 4.156 7 C -0.077 4.077 8 C -0.068 4.068 9 N -0.252 5.252 10 C 0.047 3.953 11 C -0.518 4.518 12 H 0.067 0.933 13 C -0.185 4.185 14 N -0.571 5.571 15 Si 0.766 3.234 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.213 1.213 19 C -0.043 4.043 20 C -0.092 4.092 21 C -0.191 4.191 22 C -0.185 4.185 23 C -0.212 4.212 24 C -0.140 4.140 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.001 0.999 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.594 10.178 -3.488 18.132 hybrid contribution 0.982 -1.158 0.580 1.625 sum -13.612 9.020 -2.909 16.587 Atomic orbital electron populations 1.20780 0.89387 1.03369 1.02896 1.20150 0.97328 0.92671 0.99964 1.21237 0.93863 0.98272 1.01099 1.21217 0.94813 0.97353 1.01100 1.19914 0.96239 0.93091 0.99444 1.20612 0.91539 1.01636 1.01768 1.19786 0.93751 0.94392 0.99752 1.21769 0.97920 0.95000 0.92160 1.62177 1.15783 1.42934 1.04339 1.20375 0.90284 0.89430 0.95167 1.21171 1.17503 1.12956 1.00144 0.93305 1.25448 0.98134 0.95926 0.98978 1.70037 1.33647 1.19492 1.33956 0.85784 0.78586 0.77767 0.81256 1.19404 1.20855 1.21273 1.22056 0.92847 0.93838 0.95570 1.21064 0.95996 0.96737 0.95417 1.22386 0.97442 0.98234 1.01045 1.21790 0.95019 1.01632 1.00028 1.22612 1.01619 1.00729 0.96245 1.21032 0.92944 0.98324 1.01709 0.90431 0.91337 0.90507 0.84061 0.84833 0.92379 0.90976 0.93151 0.90579 0.92704 0.94117 0.99867 0.93302 0.93602 0.91424 0.92024 0.95383 0.93048 0.91853 0.92532 0.92908 0.92333 0.92945 0.91131 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.23 0.71 -1.01 16 2 C -0.10 -2.32 5.88 -19.87 -0.12 -2.43 16 3 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 4 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 5 C -0.09 -2.66 5.88 -19.87 -0.12 -2.77 16 6 C -0.10 -3.14 9.46 71.24 0.67 -2.46 16 7 C -0.08 -2.41 4.50 -19.87 -0.09 -2.50 16 8 C 0.06 2.09 3.79 85.56 0.32 2.41 16 9 N -0.53 -21.91 4.51 -905.34 -4.08 -25.99 16 10 C 0.17 8.55 3.65 85.56 0.31 8.86 16 11 C -0.48 -25.69 5.23 25.60 0.13 -25.55 16 12 H 0.05 2.69 7.02 -2.91 -0.02 2.66 16 13 C 0.01 0.68 5.20 84.66 0.44 1.12 16 14 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 15 Si 0.94 44.19 29.54 68.60 2.03 46.21 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 C 0.09 3.21 4.59 86.30 0.40 3.60 16 20 C -0.09 -3.15 0.77 -52.18 -0.04 -3.19 16 21 C -0.13 -5.63 7.23 71.98 0.52 -5.11 16 22 C -0.13 -3.52 8.17 71.98 0.59 -2.93 16 23 C -0.16 -5.17 6.33 71.98 0.46 -4.72 16 24 C -0.12 -3.27 8.28 22.27 0.18 -3.08 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 28 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 32 H 0.05 1.77 6.26 -2.39 -0.01 1.75 16 33 H 0.08 2.57 3.04 -2.39 -0.01 2.56 16 34 H 0.05 2.11 6.52 -2.38 -0.02 2.10 16 35 H 0.04 2.07 2.09 -2.39 0.00 2.06 16 36 H -0.02 -0.95 7.93 -2.38 -0.02 -0.97 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.05 1.92 6.88 -2.39 -0.02 1.90 16 39 H 0.07 2.32 5.92 -2.39 -0.01 2.30 16 40 H 0.06 2.87 5.09 -2.39 -0.01 2.85 16 41 H 0.03 1.05 7.72 -2.39 -0.02 1.03 16 42 H 0.05 2.50 5.15 -2.39 -0.01 2.49 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 2.29 3.81 -2.39 -0.01 2.28 16 47 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.07 2.03 5.70 -2.39 -0.01 2.01 16 49 H 0.12 3.01 7.19 -2.91 -0.02 2.99 16 Total: -1.00 -59.94 354.87 3.97 -55.97 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.93 Total: 22.88 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 4.81 Total: -45.42 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.80 Total: -79.66 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -59.94 3.97 -55.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.013 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds