Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38233 * 120.00215 * 2 1 4 4 C 1.38230 * 120.00405 * 179.72429 * 3 2 1 5 5 C 1.38233 * 119.99821 * 0.26955 * 4 3 2 6 6 C 1.38238 * 119.99971 * 359.95866 * 5 4 3 7 7 C 1.50700 * 120.00113 * 180.02562 * 6 5 4 8 8 C 1.38229 * 120.00007 * 0.02562 * 6 5 4 9 9 C 1.50704 * 119.99913 * 180.02562 * 8 6 5 10 10 N 1.46901 * 109.47079 * 255.36197 * 9 8 6 11 11 C 1.46896 * 111.00028 * 186.16073 * 10 9 8 12 12 C 1.50707 * 109.47272 * 170.58584 * 11 10 9 13 13 H 1.07998 * 119.99701 * 4.38692 * 12 11 10 14 14 C 1.37879 * 119.99944 * 184.38697 * 12 11 10 15 15 N 1.31513 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99858 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47005 * 59.99797 * 16 14 12 18 18 H 1.48496 * 109.47153 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47115 * 300.00405 * 16 14 12 20 20 C 1.46898 * 111.00178 * 62.20765 * 10 9 8 21 21 C 1.52999 * 109.47071 * 243.20743 * 20 10 9 22 22 C 1.53007 * 109.47415 * 56.77901 * 21 20 10 23 23 C 1.53000 * 109.47155 * 176.77943 * 21 20 10 24 24 C 1.52999 * 109.47235 * 296.77830 * 21 20 10 25 25 H 1.09002 * 109.46656 * 95.07271 * 1 2 3 26 26 H 1.09001 * 109.47516 * 215.06739 * 1 2 3 27 27 H 1.08996 * 109.47133 * 335.07265 * 1 2 3 28 28 H 1.08001 * 119.99729 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00428 * 180.25770 * 4 3 2 30 30 H 1.08007 * 120.00295 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47050 * 84.72351 * 7 6 5 32 32 H 1.09000 * 109.47646 * 204.72697 * 7 6 5 33 33 H 1.09006 * 109.47145 * 324.72615 * 7 6 5 34 34 H 1.09000 * 109.47234 * 15.36306 * 9 8 6 35 35 H 1.09004 * 109.47086 * 135.36388 * 9 8 6 36 36 H 1.09002 * 109.47241 * 290.58364 * 11 10 9 37 37 H 1.08999 * 109.47182 * 50.58709 * 11 10 9 38 38 H 0.96998 * 119.99515 * 179.97438 * 15 14 12 39 39 H 1.09010 * 109.46943 * 3.19975 * 20 10 9 40 40 H 1.08991 * 109.47447 * 123.20221 * 20 10 9 41 41 H 1.09001 * 109.46902 * 66.28253 * 22 21 20 42 42 H 1.08992 * 109.47183 * 186.28599 * 22 21 20 43 43 H 1.08998 * 109.47019 * 306.28745 * 22 21 20 44 44 H 1.08998 * 109.47400 * 60.00091 * 23 21 20 45 45 H 1.09004 * 109.47004 * 179.97438 * 23 21 20 46 46 H 1.09005 * 109.47159 * 299.99631 * 23 21 20 47 47 H 1.09000 * 109.47205 * 61.46207 * 24 21 20 48 48 H 1.08997 * 109.47676 * 181.46713 * 24 21 20 49 49 H 1.09008 * 109.47051 * 301.46976 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0000 0.0059 6 6 3.5805 -1.1971 0.0011 7 6 4.3340 -2.5023 0.0018 8 6 2.1982 -1.1971 -0.0043 9 6 1.4448 -2.5023 -0.0089 10 7 0.9021 -2.7497 -1.3514 11 6 0.0392 -3.9384 -1.3596 12 6 -0.6784 -4.0292 -2.6818 13 1 -0.4576 -3.3201 -3.4658 14 6 -1.6168 -5.0177 -2.8904 15 7 -1.8860 -5.8809 -1.9355 16 14 -2.5067 -5.1298 -4.5290 17 1 -1.5172 -5.3391 -5.6163 18 1 -3.4572 -6.2703 -4.4990 19 1 -3.2525 -3.8693 -4.7744 20 6 1.9810 -2.8755 -2.3404 21 6 1.8665 -1.7463 -3.3665 22 6 1.9013 -0.3970 -2.6460 23 6 3.0360 -1.8299 -4.3494 24 6 0.5478 -1.8828 -4.1301 25 1 -0.3633 -0.0909 -1.0237 26 1 -0.3634 -0.8411 0.5904 27 1 -0.3633 0.9319 0.4331 28 1 1.6582 2.1324 -0.0004 29 1 4.1205 2.1324 0.0100 30 1 5.3518 0.0000 0.0100 31 1 4.5935 -2.7714 1.0257 32 1 3.7090 -3.2830 -0.4318 33 1 5.2446 -2.3964 -0.5879 34 1 2.1202 -3.3128 0.2650 35 1 0.6269 -2.4522 0.7100 36 1 0.6484 -4.8306 -1.2149 37 1 -0.6914 -3.8627 -0.5542 38 1 -2.5464 -6.5760 -2.0822 39 1 2.9453 -2.8118 -1.8362 40 1 1.8988 -3.8368 -2.8474 41 1 2.8828 -0.2513 -2.1946 42 1 1.7083 0.4021 -3.3616 43 1 1.1378 -0.3805 -1.8683 44 1 3.0112 -2.7911 -4.8628 45 1 2.9542 -1.0257 -5.0807 46 1 3.9756 -1.7326 -3.8054 47 1 -0.2861 -1.7973 -3.4333 48 1 0.4780 -1.0938 -4.8788 49 1 0.5117 -2.8548 -4.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525328557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = 38.326560 kcal Electronic energy + Delta-G solvation = -25524.113568 eV Core-core repulsion = 22451.597239 eV Total energy + Delta-G solvation = -3072.516329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23685 -37.41748 -34.69538 -33.46934 -32.86411 -31.51655 -28.08861 -27.24423 -26.63277 -26.43411 -26.06344 -25.56106 -23.56939 -21.11071 -20.40015 -19.93038 -18.09333 -16.44060 -15.79543 -15.65821 -15.03104 -14.70099 -14.28419 -14.17184 -13.77712 -13.67778 -13.11827 -12.89584 -12.76211 -12.67521 -12.55080 -12.40959 -12.14357 -11.94746 -11.71403 -11.65268 -11.36495 -11.15145 -11.09940 -10.90602 -10.79226 -10.64847 -10.55133 -10.44833 -10.37993 -9.92744 -9.68483 -9.62628 -9.52552 -8.57541 -8.36265 -8.26347 -8.09436 -7.09800 -5.95822 -3.94614 1.65166 1.67909 3.35410 3.40086 3.42439 3.98964 4.48162 4.99450 5.05175 5.10113 5.20008 5.28985 5.40257 5.46136 5.55169 5.57071 5.66018 5.70843 5.78325 5.85087 5.89872 5.97787 6.02252 6.05081 6.16384 6.18130 6.26340 6.27601 6.35269 6.43910 6.46710 6.49286 6.52896 6.62469 6.68974 6.73909 6.80969 6.85135 6.88086 6.99350 7.07095 7.26333 7.30918 7.33645 7.41453 7.42129 7.97681 8.16079 8.31153 8.64488 9.15784 9.69879 11.15837 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.005643 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.183804 B = 4960.397196 C = 5191.910338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.134 4.134 6 C -0.077 4.077 7 C -0.124 4.124 8 C -0.063 4.063 9 C 0.084 3.916 10 N -0.522 5.522 11 C 0.194 3.806 12 C -0.532 4.532 13 H 0.104 0.896 14 C 0.055 3.945 15 N -0.902 5.902 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.276 1.276 20 C 0.064 3.936 21 C -0.053 4.053 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.138 4.138 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.076 0.924 36 H -0.017 1.017 37 H 0.029 0.971 38 H 0.258 0.742 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.094 0.906 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.025 0.975 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 11.451 3.071 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.153 4.153 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.180 4.180 8 C -0.064 4.064 9 C -0.044 4.044 10 N -0.246 5.246 11 C 0.069 3.931 12 C -0.570 4.570 13 H 0.121 0.879 14 C -0.146 4.146 15 N -0.543 5.543 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.064 4.064 21 C -0.054 4.054 22 C -0.209 4.209 23 C -0.197 4.197 24 C -0.194 4.194 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.001 0.999 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.044 0.956 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.151 11.662 2.987 15.746 hybrid contribution 0.037 -0.887 -0.714 1.140 sum 10.188 10.774 2.273 15.001 Atomic orbital electron populations 1.20918 0.90882 1.01600 1.03722 1.19594 0.96207 0.92168 0.96645 1.20907 0.94097 0.97235 1.03099 1.20922 0.94298 0.97390 1.01159 1.20809 0.99029 0.92118 1.03281 1.19665 0.93272 0.94942 0.99868 1.21010 0.99851 0.95283 1.01884 1.19623 0.92432 0.95139 0.99194 1.21149 0.97087 0.92210 0.93915 1.62061 1.18530 1.42350 1.01682 1.19795 0.90803 0.84122 0.98337 1.22304 1.20499 1.13884 1.00302 0.87892 1.24993 0.97165 0.95946 0.96449 1.69974 1.34153 1.17500 1.32626 0.86717 0.79660 0.77491 0.84499 1.20386 1.21597 1.20184 1.22196 0.92761 0.97715 0.93716 1.20380 0.94577 0.95903 0.94535 1.22567 1.02576 0.94986 1.00805 1.21870 0.98041 1.00886 0.98933 1.22216 0.98360 0.99565 0.99297 0.89632 0.91063 0.92896 0.86784 0.86974 0.87009 0.91613 0.90489 0.91925 0.94870 0.90553 0.99897 0.95306 0.93216 0.93611 0.92274 0.93578 0.95381 0.88761 0.93209 0.93517 0.93744 0.89267 0.95625 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.12 36.01 0.33 -1.31 16 2 C -0.05 -0.66 3.23 -104.62 -0.34 -1.00 16 3 C -0.14 -1.75 8.92 -39.59 -0.35 -2.11 16 4 C -0.12 -1.46 9.65 -39.59 -0.38 -1.84 16 5 C -0.13 -1.71 9.11 -39.58 -0.36 -2.07 16 6 C -0.08 -1.07 4.46 -104.62 -0.47 -1.54 16 7 C -0.12 -1.58 8.64 36.01 0.31 -1.26 16 8 C -0.06 -0.97 2.98 -104.62 -0.31 -1.28 16 9 C 0.08 1.46 4.12 -4.97 -0.02 1.44 16 10 N -0.52 -10.31 3.04 -237.51 -0.72 -11.03 16 11 C 0.19 4.78 4.51 -4.97 -0.02 4.75 16 12 C -0.53 -13.99 8.01 -34.44 -0.28 -14.26 16 13 H 0.10 2.55 2.01 -52.49 -0.11 2.44 16 14 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.06 1.21 3.76 -3.83 -0.01 1.19 16 21 C -0.05 -0.92 0.85 -154.51 -0.13 -1.05 16 22 C -0.15 -2.49 5.97 37.16 0.22 -2.27 16 23 C -0.14 -2.14 8.47 37.16 0.31 -1.83 16 24 C -0.14 -2.62 6.58 37.16 0.24 -2.37 16 25 H 0.09 1.35 6.77 -51.93 -0.35 1.00 16 26 H 0.07 1.07 6.44 -51.93 -0.33 0.74 16 27 H 0.05 0.64 8.05 -51.93 -0.42 0.22 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.10 4.37 -51.93 -0.23 0.87 16 33 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.03 0.57 5.83 -51.93 -0.30 0.27 16 35 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 36 H -0.02 -0.45 8.10 -51.93 -0.42 -0.87 16 37 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 39 H 0.05 0.79 3.76 -51.92 -0.19 0.59 16 40 H 0.06 1.26 7.11 -51.93 -0.37 0.89 16 41 H 0.05 0.73 5.07 -51.93 -0.26 0.47 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 1.57 2.09 -51.93 -0.11 1.46 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.89 6.12 -51.93 -0.32 1.57 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.18 6.94 -51.92 -0.36 0.82 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -27.91 347.69 -9.01 -36.92 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.89 Total: 3.58 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -1.35 Total: -25.39 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.02 Total: -36.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.91 -9.01 -36.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525328557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.251 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds