Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38233 * 120.00215 * 2 1 4 4 C 1.38230 * 120.00405 * 179.72429 * 3 2 1 5 5 C 1.38233 * 119.99821 * 0.26955 * 4 3 2 6 6 C 1.38238 * 119.99971 * 359.95866 * 5 4 3 7 7 C 1.50700 * 120.00113 * 180.02562 * 6 5 4 8 8 C 1.38229 * 120.00007 * 0.02562 * 6 5 4 9 9 C 1.50704 * 119.99913 * 180.02562 * 8 6 5 10 10 N 1.46901 * 109.47079 * 255.36197 * 9 8 6 11 11 C 1.46896 * 111.00028 * 186.16073 * 10 9 8 12 12 C 1.50707 * 109.47272 * 170.58584 * 11 10 9 13 13 H 1.07998 * 119.99701 * 4.38692 * 12 11 10 14 14 C 1.37879 * 119.99944 * 184.38697 * 12 11 10 15 15 N 1.31513 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99858 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47005 * 59.99797 * 16 14 12 18 18 H 1.48496 * 109.47153 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47115 * 300.00405 * 16 14 12 20 20 C 1.46898 * 111.00178 * 62.20765 * 10 9 8 21 21 C 1.52999 * 109.47071 * 243.20743 * 20 10 9 22 22 C 1.53007 * 109.47415 * 56.77901 * 21 20 10 23 23 C 1.53000 * 109.47155 * 176.77943 * 21 20 10 24 24 C 1.52999 * 109.47235 * 296.77830 * 21 20 10 25 25 H 1.09002 * 109.46656 * 95.07271 * 1 2 3 26 26 H 1.09001 * 109.47516 * 215.06739 * 1 2 3 27 27 H 1.08996 * 109.47133 * 335.07265 * 1 2 3 28 28 H 1.08001 * 119.99729 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00428 * 180.25770 * 4 3 2 30 30 H 1.08007 * 120.00295 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47050 * 84.72351 * 7 6 5 32 32 H 1.09000 * 109.47646 * 204.72697 * 7 6 5 33 33 H 1.09006 * 109.47145 * 324.72615 * 7 6 5 34 34 H 1.09000 * 109.47234 * 15.36306 * 9 8 6 35 35 H 1.09004 * 109.47086 * 135.36388 * 9 8 6 36 36 H 1.09002 * 109.47241 * 290.58364 * 11 10 9 37 37 H 1.08999 * 109.47182 * 50.58709 * 11 10 9 38 38 H 0.96998 * 119.99515 * 179.97438 * 15 14 12 39 39 H 1.09010 * 109.46943 * 3.19975 * 20 10 9 40 40 H 1.08991 * 109.47447 * 123.20221 * 20 10 9 41 41 H 1.09001 * 109.46902 * 66.28253 * 22 21 20 42 42 H 1.08992 * 109.47183 * 186.28599 * 22 21 20 43 43 H 1.08998 * 109.47019 * 306.28745 * 22 21 20 44 44 H 1.08998 * 109.47400 * 60.00091 * 23 21 20 45 45 H 1.09004 * 109.47004 * 179.97438 * 23 21 20 46 46 H 1.09005 * 109.47159 * 299.99631 * 23 21 20 47 47 H 1.09000 * 109.47205 * 61.46207 * 24 21 20 48 48 H 1.08997 * 109.47676 * 181.46713 * 24 21 20 49 49 H 1.09008 * 109.47051 * 301.46976 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0000 0.0059 6 6 3.5805 -1.1971 0.0011 7 6 4.3340 -2.5023 0.0018 8 6 2.1982 -1.1971 -0.0043 9 6 1.4448 -2.5023 -0.0089 10 7 0.9021 -2.7497 -1.3514 11 6 0.0392 -3.9384 -1.3596 12 6 -0.6784 -4.0292 -2.6818 13 1 -0.4576 -3.3201 -3.4658 14 6 -1.6168 -5.0177 -2.8904 15 7 -1.8860 -5.8809 -1.9355 16 14 -2.5067 -5.1298 -4.5290 17 1 -1.5172 -5.3391 -5.6163 18 1 -3.4572 -6.2703 -4.4990 19 1 -3.2525 -3.8693 -4.7744 20 6 1.9810 -2.8755 -2.3404 21 6 1.8665 -1.7463 -3.3665 22 6 1.9013 -0.3970 -2.6460 23 6 3.0360 -1.8299 -4.3494 24 6 0.5478 -1.8828 -4.1301 25 1 -0.3633 -0.0909 -1.0237 26 1 -0.3634 -0.8411 0.5904 27 1 -0.3633 0.9319 0.4331 28 1 1.6582 2.1324 -0.0004 29 1 4.1205 2.1324 0.0100 30 1 5.3518 0.0000 0.0100 31 1 4.5935 -2.7714 1.0257 32 1 3.7090 -3.2830 -0.4318 33 1 5.2446 -2.3964 -0.5879 34 1 2.1202 -3.3128 0.2650 35 1 0.6269 -2.4522 0.7100 36 1 0.6484 -4.8306 -1.2149 37 1 -0.6914 -3.8627 -0.5542 38 1 -2.5464 -6.5760 -2.0822 39 1 2.9453 -2.8118 -1.8362 40 1 1.8988 -3.8368 -2.8474 41 1 2.8828 -0.2513 -2.1946 42 1 1.7083 0.4021 -3.3616 43 1 1.1378 -0.3805 -1.8683 44 1 3.0112 -2.7911 -4.8628 45 1 2.9542 -1.0257 -5.0807 46 1 3.9756 -1.7326 -3.8054 47 1 -0.2861 -1.7973 -3.4333 48 1 0.4780 -1.0938 -4.8788 49 1 0.5117 -2.8548 -4.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525328557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = 25.254658 kcal Electronic energy + Delta-G solvation = -25524.680408 eV Core-core repulsion = 22451.597239 eV Total energy + Delta-G solvation = -3073.083169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43451 -38.82437 -36.18314 -34.76013 -34.51860 -32.92429 -29.69156 -28.64930 -27.91776 -27.73169 -27.38960 -26.88848 -25.30092 -22.77713 -21.44403 -21.17585 -19.57830 -18.33404 -17.02153 -16.89850 -16.67983 -16.24637 -15.62743 -15.54862 -15.19567 -15.05012 -14.43757 -14.33611 -14.26988 -13.86744 -13.73301 -13.65465 -13.55007 -13.33045 -13.21002 -13.11011 -12.79164 -12.68256 -12.61465 -12.45914 -12.35127 -12.11843 -11.92574 -11.71693 -11.65616 -11.36024 -11.26776 -11.19490 -11.08687 -10.52260 -10.46632 -9.32940 -9.18128 -8.77857 -8.10029 -6.15028 0.60588 0.64011 1.41393 1.43260 1.49999 2.44904 2.92838 3.23335 3.50965 3.93816 4.01506 4.12430 4.17403 4.18755 4.25940 4.37894 4.45873 4.52782 4.58906 4.70741 4.72130 4.78941 4.85705 4.89986 4.93209 4.94465 4.98464 5.00996 5.06203 5.11686 5.13916 5.15752 5.20412 5.27361 5.32130 5.39299 5.41578 5.48860 5.53610 5.56909 5.74845 5.79868 5.82232 5.89880 5.94013 6.00272 6.20504 6.30404 6.51763 6.77279 7.05788 7.54136 9.01885 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.005643 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.183804 B = 4960.397196 C = 5191.910338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.113 4.113 5 C -0.134 4.134 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.081 4.081 9 C 0.086 3.914 10 N -0.514 5.514 11 C 0.211 3.789 12 C -0.537 4.537 13 H 0.120 0.880 14 C -0.002 4.002 15 N -0.942 5.942 16 Si 0.951 3.049 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.266 1.266 20 C 0.068 3.932 21 C -0.052 4.052 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.063 0.937 36 H -0.051 1.051 37 H -0.002 1.002 38 H 0.257 0.743 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 14.411 2.059 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.056 4.056 3 C -0.154 4.154 4 C -0.131 4.131 5 C -0.152 4.152 6 C -0.085 4.085 7 C -0.179 4.179 8 C -0.081 4.081 9 C -0.041 4.041 10 N -0.238 5.238 11 C 0.084 3.916 12 C -0.575 4.575 13 H 0.137 0.863 14 C -0.198 4.198 15 N -0.585 5.585 16 Si 0.776 3.224 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.191 1.191 20 C -0.060 4.060 21 C -0.053 4.053 22 C -0.202 4.202 23 C -0.193 4.193 24 C -0.190 4.190 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.082 0.918 36 H -0.033 1.033 37 H 0.016 0.984 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.200 14.644 1.970 19.162 hybrid contribution -0.524 -1.757 -0.316 1.860 sum 11.676 12.887 1.654 17.468 Atomic orbital electron populations 1.20842 0.91473 1.02029 1.02381 1.19630 0.95966 0.92665 0.97358 1.21150 0.94772 0.97174 1.02305 1.21298 0.94038 0.98506 0.99213 1.21101 1.00331 0.91508 1.02226 1.19821 0.92665 0.96131 0.99859 1.20996 0.99992 0.94128 1.02786 1.19397 0.93072 0.93866 1.01796 1.21109 0.96855 0.94016 0.92141 1.62015 1.19070 1.39158 1.03534 1.19432 0.90476 0.84825 0.96820 1.22842 1.19830 1.13656 1.01176 0.86255 1.25855 0.98317 0.95816 0.99856 1.70128 1.35127 1.18414 1.34798 0.85710 0.78550 0.77629 0.80472 1.19420 1.21686 1.19140 1.22201 0.93121 0.96929 0.93724 1.20390 0.94672 0.95855 0.94403 1.22483 1.02843 0.94166 1.00680 1.21817 0.97452 1.01266 0.98719 1.22069 0.98446 0.99202 0.99245 0.91431 0.92991 0.90545 0.84791 0.83983 0.84564 0.90499 0.92837 0.90038 0.95258 0.91849 1.03299 0.98361 0.93455 0.91794 0.95587 0.92841 0.94514 0.89365 0.93752 0.91909 0.92417 0.91874 0.93374 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.12 71.24 0.65 -2.51 16 2 C -0.06 -1.53 3.23 -19.86 -0.06 -1.60 16 3 C -0.14 -3.07 8.92 22.27 0.20 -2.87 16 4 C -0.11 -2.25 9.65 22.27 0.21 -2.03 16 5 C -0.13 -2.86 9.11 22.27 0.20 -2.66 16 6 C -0.08 -2.17 4.46 -19.87 -0.09 -2.26 16 7 C -0.12 -2.92 8.64 71.24 0.62 -2.31 16 8 C -0.08 -2.42 2.98 -19.87 -0.06 -2.47 16 9 C 0.09 3.14 4.12 85.56 0.35 3.49 16 10 N -0.51 -21.28 3.04 -905.35 -2.75 -24.03 16 11 C 0.21 11.09 4.51 85.56 0.39 11.48 16 12 C -0.54 -29.48 8.01 25.60 0.21 -29.27 16 13 H 0.12 6.07 2.01 -2.91 -0.01 6.07 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 16 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C 0.07 2.60 3.76 86.30 0.32 2.93 16 21 C -0.05 -1.75 0.85 -52.18 -0.04 -1.80 16 22 C -0.15 -4.41 5.97 71.98 0.43 -3.98 16 23 C -0.13 -3.81 8.47 71.98 0.61 -3.20 16 24 C -0.13 -4.97 6.58 71.98 0.47 -4.49 16 25 H 0.07 2.16 6.77 -2.39 -0.02 2.14 16 26 H 0.05 1.65 6.44 -2.39 -0.02 1.63 16 27 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 28 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.52 4.37 -2.39 -0.01 1.51 16 33 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 34 H 0.03 1.08 5.83 -2.39 -0.01 1.06 16 35 H 0.06 2.41 6.56 -2.38 -0.02 2.40 16 36 H -0.05 -2.95 8.10 -2.39 -0.02 -2.96 16 37 H 0.00 -0.10 8.00 -2.39 -0.02 -0.12 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.06 2.20 3.76 -2.38 -0.01 2.19 16 40 H 0.03 1.15 7.11 -2.39 -0.02 1.13 16 41 H 0.05 1.53 5.07 -2.39 -0.01 1.52 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 2.84 2.09 -2.39 0.00 2.83 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.06 2.69 6.12 -2.39 -0.01 2.67 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.54 6.94 -2.38 -0.02 1.53 16 Total: -1.00 -62.68 347.69 5.37 -57.31 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.93 Total: 20.57 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 4.87 Total: -43.21 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.46 Total: -81.42 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.68 5.37 -57.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525328557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -62.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds