Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00246 * 2 1 4 4 C 1.38236 * 120.00348 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00203 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99483 * 359.95277 * 4 3 2 7 7 C 1.38232 * 120.00254 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.99898 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47488 * 96.45981 * 8 7 6 10 10 C 1.46907 * 111.00110 * 173.81736 * 9 8 7 11 11 C 1.50697 * 109.46854 * 189.92136 * 10 9 8 12 12 H 1.08001 * 120.00498 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46864 * 90.00378 * 15 13 11 17 17 H 1.48496 * 109.47468 * 210.00131 * 15 13 11 18 18 H 1.48501 * 109.47390 * 330.00453 * 15 13 11 19 19 C 1.46905 * 110.99829 * 297.76616 * 9 8 7 20 20 C 1.53003 * 109.47065 * 281.18630 * 19 9 8 21 21 C 1.52997 * 109.47343 * 41.02037 * 20 19 9 22 22 C 1.53003 * 109.46792 * 161.02300 * 20 19 9 23 23 C 1.52998 * 109.46889 * 281.01845 * 20 19 9 24 24 C 1.38235 * 120.00199 * 0.24816 * 7 6 4 25 25 H 1.08995 * 109.47188 * 89.99675 * 1 2 3 26 26 H 1.09003 * 109.46876 * 210.00284 * 1 2 3 27 27 H 1.09007 * 109.46899 * 329.99736 * 1 2 3 28 28 H 1.08006 * 119.99798 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.46903 * 269.97796 * 5 4 3 30 30 H 1.09004 * 109.46661 * 29.97737 * 5 4 3 31 31 H 1.08997 * 109.46785 * 149.97459 * 5 4 3 32 32 H 1.07999 * 119.99450 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47217 * 336.45116 * 8 7 6 34 34 H 1.09010 * 109.47069 * 216.45484 * 8 7 6 35 35 H 1.08993 * 109.46674 * 309.92116 * 10 9 8 36 36 H 1.09001 * 109.47135 * 69.92367 * 10 9 8 37 37 H 0.97002 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.46807 * 41.18245 * 19 9 8 39 39 H 1.08989 * 109.47267 * 161.18239 * 19 9 8 40 40 H 1.09010 * 109.46714 * 65.08953 * 21 20 19 41 41 H 1.08998 * 109.47037 * 185.08362 * 21 20 19 42 42 H 1.08994 * 109.47401 * 305.08846 * 21 20 19 43 43 H 1.08997 * 109.47173 * 59.99753 * 22 20 19 44 44 H 1.09006 * 109.46659 * 179.97438 * 22 20 19 45 45 H 1.08998 * 109.47155 * 299.99699 * 22 20 19 46 46 H 1.09005 * 109.46531 * 96.08907 * 23 20 19 47 47 H 1.09002 * 109.47217 * 216.08538 * 23 20 19 48 48 H 1.08998 * 109.47366 * 336.09108 * 23 20 19 49 49 H 1.07999 * 120.00044 * 179.72221 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0001 7 6 3.5805 -1.1972 0.0004 8 6 4.3340 -2.5023 0.0003 9 7 4.4444 -3.0041 1.3765 10 6 5.0438 -4.3451 1.4013 11 6 4.9195 -4.9252 2.7866 12 1 4.4434 -4.3546 3.5703 13 6 5.4137 -6.1844 3.0536 14 7 5.3048 -6.6908 4.2624 15 14 6.2366 -7.1716 1.6980 16 1 7.6916 -6.8748 1.6831 17 1 6.0296 -8.6210 1.9457 18 1 5.6429 -6.8036 0.3875 19 6 5.2065 -2.0713 2.2174 20 6 6.7024 -2.2482 1.9490 21 6 6.9330 -2.4314 0.4476 22 6 7.4576 -1.0089 2.4336 23 6 7.2124 -3.4813 2.6975 24 6 2.1982 -1.1972 -0.0048 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 -0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7450 3.2621 0.5124 31 1 5.2865 2.3720 0.5128 32 1 5.3517 0.0000 -0.0001 33 1 5.3314 -2.3460 -0.4107 34 1 3.7995 -3.2303 -0.6101 35 1 4.5251 -4.9880 0.6903 36 1 6.0970 -4.2775 1.1289 37 1 5.6521 -7.5768 4.4501 38 1 4.9138 -1.0479 1.9822 39 1 4.9991 -2.2763 3.2675 40 1 6.6534 -1.5176 -0.0770 41 1 7.9858 -2.6472 0.2654 42 1 6.3242 -3.2594 0.0848 43 1 7.2932 -0.8785 3.5032 44 1 8.5233 -1.1352 2.2428 45 1 7.0942 -0.1304 1.9004 46 1 7.2191 -4.3382 2.0237 47 1 8.2240 -3.2948 3.0582 48 1 6.5575 -3.6894 3.5435 49 1 1.6582 -2.1325 -0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525328667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = 59.068387 kcal Electronic energy + Delta-G solvation = -24733.258793 eV Core-core repulsion = 21661.641897 eV Total energy + Delta-G solvation = -3071.616896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11888 -38.70443 -34.07319 -33.39263 -32.93153 -31.55738 -28.55521 -27.93402 -27.20374 -26.59039 -26.13043 -25.49153 -23.61443 -20.72706 -20.55952 -19.78223 -18.25408 -16.87769 -16.11751 -15.63923 -15.19431 -14.90937 -14.60388 -14.07890 -13.85388 -13.67170 -13.38715 -13.19541 -13.11605 -12.73997 -12.69101 -12.50695 -12.43937 -11.93833 -11.72798 -11.56702 -11.54023 -11.29804 -11.24250 -10.96805 -10.87496 -10.84164 -10.59105 -10.41637 -10.31285 -10.05348 -9.83290 -9.70210 -9.56706 -9.16625 -8.47228 -8.35835 -8.31241 -7.00346 -6.01232 -3.91786 1.57935 1.61141 3.26925 3.36178 3.37608 3.91228 4.43835 4.87989 4.89690 5.00240 5.11449 5.27541 5.29234 5.37069 5.37957 5.42479 5.48342 5.54183 5.56487 5.64277 5.69592 5.78240 5.82645 5.88278 5.89936 5.99168 6.03723 6.11172 6.14827 6.17236 6.28286 6.36975 6.39604 6.44466 6.51387 6.64109 6.73277 6.76691 6.78396 6.85275 6.94121 6.99307 7.06230 7.22248 7.27049 7.62881 7.69294 7.99714 8.14999 8.72797 9.07454 9.60872 11.12150 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.005196 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.371917 B = 5387.788705 C = 6231.503196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.051 4.051 8 C 0.044 3.956 9 N -0.514 5.514 10 C 0.129 3.871 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.070 3.930 14 N -0.901 5.901 15 Si 0.862 3.138 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.267 1.267 19 C 0.074 3.926 20 C -0.095 4.095 21 C -0.167 4.167 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.104 4.104 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.019 0.981 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.021 0.979 48 H 0.094 0.906 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 15.457 -9.746 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.168 4.168 6 C -0.141 4.141 7 C -0.051 4.051 8 C -0.083 4.083 9 N -0.236 5.236 10 C 0.004 3.996 11 C -0.527 4.527 12 H 0.097 0.903 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.689 3.311 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.054 4.054 20 C -0.097 4.097 21 C -0.223 4.223 22 C -0.191 4.191 23 C -0.197 4.197 24 C -0.122 4.122 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.113 0.887 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.153 15.226 -9.443 18.045 hybrid contribution 1.278 -0.675 -0.927 1.716 sum -0.875 14.551 -10.370 17.890 Atomic orbital electron populations 1.20759 0.91608 1.02626 1.01853 1.19859 0.95751 0.93190 0.99945 1.20766 0.93451 0.97172 1.03546 1.19783 0.93760 0.94999 1.00377 1.20746 0.99861 0.94309 1.01841 1.20929 0.99417 0.91565 1.02145 1.19904 0.93730 0.94812 0.96687 1.22030 1.00004 0.92905 0.93400 1.62253 1.51710 1.03268 1.06359 1.21014 0.94378 0.85396 0.98838 1.20881 1.36837 1.00612 0.94344 0.90292 1.24794 0.96201 0.97258 0.94863 1.69874 1.47252 1.17259 1.19731 0.87092 0.80360 0.80037 0.83584 1.20222 1.21361 1.19215 1.22248 0.88936 0.95263 0.98980 1.21149 0.97683 0.96170 0.94684 1.22792 1.01225 1.01579 0.96712 1.21851 0.99313 0.97013 1.00916 1.22516 0.98908 0.95743 1.02565 1.20940 0.93796 0.97335 1.00177 0.91608 0.91447 0.91951 0.86840 0.91623 0.91894 0.91731 0.86534 0.90859 0.91150 0.96287 0.95663 0.92825 0.92356 0.90568 0.93161 0.93652 0.89769 0.92792 0.93477 0.93713 0.91766 0.96007 0.88724 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.09 -1.16 5.88 -104.62 -0.62 -1.78 16 3 C -0.13 -1.65 9.36 -39.58 -0.37 -2.02 16 4 C -0.09 -1.14 5.88 -104.62 -0.62 -1.75 16 5 C -0.11 -1.09 10.01 36.01 0.36 -0.72 16 6 C -0.12 -1.72 7.62 -39.58 -0.30 -2.02 16 7 C -0.05 -0.79 4.63 -104.63 -0.48 -1.28 16 8 C 0.04 0.74 4.51 -4.98 -0.02 0.72 16 9 N -0.51 -10.34 4.72 -237.51 -1.12 -11.46 16 10 C 0.13 2.95 2.73 -4.97 -0.01 2.93 16 11 C -0.49 -13.05 5.96 -34.44 -0.21 -13.25 16 12 H 0.08 2.35 7.40 -52.49 -0.39 1.96 16 13 C 0.07 1.93 5.30 -17.82 -0.09 1.84 16 14 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 15 Si 0.86 20.95 26.47 -169.99 -4.50 16.45 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 19 C 0.07 1.39 4.59 -3.82 -0.02 1.38 16 20 C -0.10 -1.65 0.77 -154.51 -0.12 -1.77 16 21 C -0.17 -2.68 6.16 37.16 0.23 -2.45 16 22 C -0.13 -1.96 8.17 37.16 0.30 -1.65 16 23 C -0.14 -2.87 7.25 37.16 0.27 -2.60 16 24 C -0.10 -1.57 9.38 -39.58 -0.37 -1.94 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.06 0.57 8.09 -51.92 -0.42 0.16 16 28 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.12 1.56 6.55 -52.49 -0.34 1.22 16 33 H 0.07 1.17 3.10 -51.94 -0.16 1.01 16 34 H 0.07 1.20 7.99 -51.92 -0.42 0.79 16 35 H 0.02 0.46 7.04 -51.93 -0.37 0.09 16 36 H 0.03 0.58 1.85 -51.93 -0.10 0.48 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.06 1.02 5.24 -51.93 -0.27 0.75 16 39 H 0.08 1.62 6.81 -51.94 -0.35 1.27 16 40 H 0.05 0.72 5.61 -51.92 -0.29 0.42 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.48 3.28 -51.93 -0.17 1.31 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 45 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.06 1.41 4.06 -51.93 -0.21 1.20 16 47 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 48 H 0.09 2.22 5.42 -51.93 -0.28 1.94 16 49 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -28.70 351.81 -9.23 -37.93 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.98 Total: 5.06 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -1.71 Total: -27.20 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.35 Total: -37.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.50 Total: 16.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.70 -9.23 -37.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525328667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.996 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds