Wall clock time and date at job start Tue Mar 31 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00246 * 2 1 4 4 C 1.38236 * 120.00348 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00203 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99483 * 359.95277 * 4 3 2 7 7 C 1.38232 * 120.00254 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.99898 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47488 * 96.45981 * 8 7 6 10 10 C 1.46907 * 111.00110 * 173.81736 * 9 8 7 11 11 C 1.50697 * 109.46854 * 189.92136 * 10 9 8 12 12 H 1.08001 * 120.00498 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46864 * 90.00378 * 15 13 11 17 17 H 1.48496 * 109.47468 * 210.00131 * 15 13 11 18 18 H 1.48501 * 109.47390 * 330.00453 * 15 13 11 19 19 C 1.46905 * 110.99829 * 297.76616 * 9 8 7 20 20 C 1.53003 * 109.47065 * 281.18630 * 19 9 8 21 21 C 1.52997 * 109.47343 * 41.02037 * 20 19 9 22 22 C 1.53003 * 109.46792 * 161.02300 * 20 19 9 23 23 C 1.52998 * 109.46889 * 281.01845 * 20 19 9 24 24 C 1.38235 * 120.00199 * 0.24816 * 7 6 4 25 25 H 1.08995 * 109.47188 * 89.99675 * 1 2 3 26 26 H 1.09003 * 109.46876 * 210.00284 * 1 2 3 27 27 H 1.09007 * 109.46899 * 329.99736 * 1 2 3 28 28 H 1.08006 * 119.99798 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.46903 * 269.97796 * 5 4 3 30 30 H 1.09004 * 109.46661 * 29.97737 * 5 4 3 31 31 H 1.08997 * 109.46785 * 149.97459 * 5 4 3 32 32 H 1.07999 * 119.99450 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47217 * 336.45116 * 8 7 6 34 34 H 1.09010 * 109.47069 * 216.45484 * 8 7 6 35 35 H 1.08993 * 109.46674 * 309.92116 * 10 9 8 36 36 H 1.09001 * 109.47135 * 69.92367 * 10 9 8 37 37 H 0.97002 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.46807 * 41.18245 * 19 9 8 39 39 H 1.08989 * 109.47267 * 161.18239 * 19 9 8 40 40 H 1.09010 * 109.46714 * 65.08953 * 21 20 19 41 41 H 1.08998 * 109.47037 * 185.08362 * 21 20 19 42 42 H 1.08994 * 109.47401 * 305.08846 * 21 20 19 43 43 H 1.08997 * 109.47173 * 59.99753 * 22 20 19 44 44 H 1.09006 * 109.46659 * 179.97438 * 22 20 19 45 45 H 1.08998 * 109.47155 * 299.99699 * 22 20 19 46 46 H 1.09005 * 109.46531 * 96.08907 * 23 20 19 47 47 H 1.09002 * 109.47217 * 216.08538 * 23 20 19 48 48 H 1.08998 * 109.47366 * 336.09108 * 23 20 19 49 49 H 1.07999 * 120.00044 * 179.72221 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0001 7 6 3.5805 -1.1972 0.0004 8 6 4.3340 -2.5023 0.0003 9 7 4.4444 -3.0041 1.3765 10 6 5.0438 -4.3451 1.4013 11 6 4.9195 -4.9252 2.7866 12 1 4.4434 -4.3546 3.5703 13 6 5.4137 -6.1844 3.0536 14 7 5.3048 -6.6908 4.2624 15 14 6.2366 -7.1716 1.6980 16 1 7.6916 -6.8748 1.6831 17 1 6.0296 -8.6210 1.9457 18 1 5.6429 -6.8036 0.3875 19 6 5.2065 -2.0713 2.2174 20 6 6.7024 -2.2482 1.9490 21 6 6.9330 -2.4314 0.4476 22 6 7.4576 -1.0089 2.4336 23 6 7.2124 -3.4813 2.6975 24 6 2.1982 -1.1972 -0.0048 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 -0.0004 29 1 4.5157 2.8164 -1.0289 30 1 3.7450 3.2621 0.5124 31 1 5.2865 2.3720 0.5128 32 1 5.3517 0.0000 -0.0001 33 1 5.3314 -2.3460 -0.4107 34 1 3.7995 -3.2303 -0.6101 35 1 4.5251 -4.9880 0.6903 36 1 6.0970 -4.2775 1.1289 37 1 5.6521 -7.5768 4.4501 38 1 4.9138 -1.0479 1.9822 39 1 4.9991 -2.2763 3.2675 40 1 6.6534 -1.5176 -0.0770 41 1 7.9858 -2.6472 0.2654 42 1 6.3242 -3.2594 0.0848 43 1 7.2932 -0.8785 3.5032 44 1 8.5233 -1.1352 2.2428 45 1 7.0942 -0.1304 1.9004 46 1 7.2191 -4.3382 2.0237 47 1 8.2240 -3.2948 3.0582 48 1 6.5575 -3.6894 3.5435 49 1 1.6582 -2.1325 -0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525328667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:16 Heat of formation + Delta-G solvation = 43.335816 kcal Electronic energy + Delta-G solvation = -24733.941008 eV Core-core repulsion = 21661.641897 eV Total energy + Delta-G solvation = -3072.299111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47533 -39.90350 -35.42863 -34.90385 -34.30345 -33.01653 -30.27362 -29.29775 -28.13371 -27.60548 -27.56623 -26.87543 -25.30828 -22.35473 -21.53446 -21.06430 -19.72709 -18.91851 -17.22200 -16.89756 -16.74245 -16.30769 -16.17411 -15.70989 -14.93478 -14.81849 -14.68937 -14.58726 -14.34814 -13.94598 -13.88935 -13.71749 -13.28436 -13.24214 -13.18492 -13.02867 -12.80404 -12.67638 -12.52610 -12.43596 -12.27819 -12.18940 -12.01817 -11.85767 -11.74382 -11.67476 -11.47473 -11.38219 -11.16747 -11.02238 -10.60811 -9.44613 -9.33334 -8.57294 -8.19267 -6.12933 0.52656 0.55796 1.32071 1.35593 1.43718 2.37633 2.83187 3.15032 3.53001 3.91161 3.94026 3.99677 4.02693 4.04855 4.15036 4.30229 4.47473 4.51046 4.57249 4.64914 4.68968 4.72260 4.76737 4.80788 4.84142 4.84418 4.85689 4.89842 4.91262 4.98008 5.04433 5.08569 5.12066 5.13040 5.16027 5.31833 5.34028 5.36728 5.44272 5.47421 5.58775 5.68522 5.73306 5.75686 5.87226 5.89134 6.11677 6.24955 6.52094 6.78937 6.85487 7.43161 8.97994 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.005196 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.371917 B = 5387.788705 C = 6231.503196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.068 4.068 8 C 0.049 3.951 9 N -0.533 5.533 10 C 0.140 3.860 11 C -0.476 4.476 12 H 0.031 0.969 13 C 0.016 3.984 14 N -0.951 5.951 15 Si 0.921 3.079 16 H -0.263 1.263 17 H -0.289 1.289 18 H -0.251 1.251 19 C 0.083 3.917 20 C -0.092 4.092 21 C -0.163 4.163 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.129 4.129 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.009 0.991 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.052 0.948 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 18.225 -12.239 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.089 4.089 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.068 4.068 8 C -0.078 4.078 9 N -0.256 5.256 10 C 0.014 3.986 11 C -0.515 4.515 12 H 0.050 0.950 13 C -0.180 4.180 14 N -0.593 5.593 15 Si 0.746 3.254 16 H -0.188 1.188 17 H -0.216 1.216 18 H -0.175 1.175 19 C -0.046 4.046 20 C -0.094 4.094 21 C -0.219 4.219 22 C -0.186 4.186 23 C -0.191 4.191 24 C -0.148 4.148 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.114 18.019 -11.955 21.653 hybrid contribution 0.847 -1.424 -0.088 1.659 sum -0.267 16.596 -12.043 20.507 Atomic orbital electron populations 1.20800 0.89869 1.03120 1.02928 1.20169 0.97203 0.92842 0.99005 1.21134 0.93784 0.97823 1.02504 1.20176 0.94127 0.95863 0.98697 1.20807 0.99890 0.92838 1.03072 1.21049 0.99952 0.91435 1.02461 1.19829 0.93895 0.94641 0.98460 1.22016 1.01094 0.93596 0.91073 1.62060 1.52136 1.02523 1.08882 1.20800 0.95341 0.86804 0.95680 1.20975 1.35178 1.00150 0.95164 0.95026 1.25529 0.97103 0.98435 0.96964 1.70033 1.49325 1.17822 1.22160 0.86121 0.80010 0.78092 0.81210 1.18774 1.21556 1.17508 1.22103 0.90256 0.95637 0.96557 1.21089 0.96513 0.96095 0.95681 1.22707 1.01898 1.02110 0.95235 1.21798 0.99814 0.96167 1.00787 1.22357 0.98979 0.96779 1.00998 1.21005 0.94042 0.97817 1.01908 0.90171 0.92132 0.90284 0.84265 0.90144 0.90567 0.91170 0.85522 0.89230 0.91961 0.97316 0.93977 0.92925 0.90548 0.94496 0.90651 0.92160 0.91557 0.93393 0.91989 0.91432 0.93482 0.94435 0.92915 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.09 -2.31 5.88 -19.86 -0.12 -2.43 16 3 C -0.13 -2.99 9.36 22.27 0.21 -2.78 16 4 C -0.09 -1.98 5.88 -19.87 -0.12 -2.09 16 5 C -0.11 -1.69 10.01 71.24 0.71 -0.97 16 6 C -0.13 -3.36 7.62 22.27 0.17 -3.19 16 7 C -0.07 -2.06 4.63 -19.87 -0.09 -2.15 16 8 C 0.05 1.63 4.51 85.56 0.39 2.01 16 9 N -0.53 -21.93 4.72 -905.34 -4.28 -26.21 16 10 C 0.14 6.52 2.73 85.55 0.23 6.75 16 11 C -0.48 -26.77 5.96 25.60 0.15 -26.62 16 12 H 0.03 2.03 7.40 -2.91 -0.02 2.01 16 13 C 0.02 0.92 5.30 84.66 0.45 1.36 16 14 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 15 Si 0.92 43.74 26.47 68.60 1.82 45.56 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 18 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 19 C 0.08 3.14 4.59 86.30 0.40 3.54 16 20 C -0.09 -3.08 0.77 -52.18 -0.04 -3.12 16 21 C -0.16 -4.79 6.16 71.98 0.44 -4.35 16 22 C -0.13 -3.41 8.17 71.98 0.59 -2.82 16 23 C -0.13 -5.51 7.25 71.98 0.52 -4.99 16 24 C -0.13 -3.90 9.38 22.27 0.21 -3.69 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 27 H 0.08 1.26 8.09 -2.38 -0.02 1.24 16 28 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.13 2.92 6.55 -2.91 -0.02 2.91 16 33 H 0.09 2.70 3.10 -2.40 -0.01 2.69 16 34 H 0.06 2.14 7.99 -2.38 -0.02 2.12 16 35 H 0.01 0.43 7.04 -2.39 -0.02 0.41 16 36 H 0.04 1.88 1.85 -2.39 0.00 1.88 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.08 2.61 5.24 -2.38 -0.01 2.60 16 39 H 0.04 1.67 6.81 -2.39 -0.02 1.65 16 40 H 0.07 1.85 5.61 -2.38 -0.01 1.83 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.20 3.28 -2.39 -0.01 2.19 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.49 8.12 -2.38 -0.02 1.47 16 45 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 46 H 0.05 2.06 4.06 -2.38 -0.01 2.05 16 47 H 0.04 1.37 7.74 -2.39 -0.02 1.35 16 48 H 0.05 2.60 5.42 -2.39 -0.01 2.59 16 49 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -65.71 351.81 3.53 -62.18 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.87 Total: 24.49 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 4.82 Total: -46.96 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -3.98 Total: -85.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.82 Total: 45.56 kcal Total: -65.71 3.53 -62.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525328667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.518 kcal (2) G-P(sol) polarization free energy of solvation -65.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds