Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47538 * 2 1 4 4 C 1.46896 * 111.00379 * 161.99114 * 3 2 1 5 5 C 1.50705 * 109.47092 * 293.95362 * 4 3 2 6 6 H 1.08004 * 119.99384 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00044 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99969 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46727 * 60.00074 * 9 7 5 11 11 H 1.48492 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47256 * 300.00611 * 9 7 5 13 13 C 1.46907 * 110.99937 * 285.94178 * 3 2 1 14 14 H 1.09004 * 109.46914 * 310.97241 * 13 3 2 15 15 C 1.52994 * 109.47305 * 190.96844 * 13 3 2 16 16 C 1.50704 * 109.47010 * 70.96940 * 13 3 2 17 17 C 1.38234 * 120.00025 * 44.22117 * 16 13 3 18 18 C 1.38234 * 119.99675 * 179.78954 * 17 16 13 19 19 C 1.38223 * 120.00355 * 0.44248 * 18 17 16 20 20 C 1.50703 * 120.00335 * 179.83548 * 19 18 17 21 21 C 1.52996 * 109.47339 * 239.97555 * 20 19 18 22 22 C 1.52997 * 109.46746 * 359.97438 * 20 19 18 23 23 C 1.53006 * 109.47104 * 119.97491 * 20 19 18 24 24 C 1.38245 * 119.99869 * 359.81011 * 19 18 17 25 25 C 1.38229 * 119.99752 * 224.49595 * 16 13 3 26 26 H 1.08996 * 109.47499 * 191.01598 * 1 2 3 27 27 H 1.08998 * 109.46585 * 311.02281 * 1 2 3 28 28 H 1.09000 * 109.46938 * 71.01880 * 1 2 3 29 29 H 1.09000 * 109.46703 * 239.99710 * 2 1 3 30 30 H 1.09000 * 109.47228 * 120.00381 * 2 1 3 31 31 H 1.08994 * 109.47906 * 173.95360 * 4 3 2 32 32 H 1.09004 * 109.47055 * 53.94688 * 4 3 2 33 33 H 0.97002 * 119.99635 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47240 * 60.00180 * 15 13 3 35 35 H 1.09002 * 109.47550 * 180.02562 * 15 13 3 36 36 H 1.09005 * 109.46971 * 300.00266 * 15 13 3 37 37 H 1.08003 * 119.99673 * 359.97438 * 17 16 13 38 38 H 1.08004 * 119.99305 * 180.27732 * 18 17 16 39 39 H 1.09006 * 109.47177 * 59.99540 * 21 20 19 40 40 H 1.08994 * 109.47666 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.46941 * 300.00269 * 21 20 19 42 42 H 1.08998 * 109.47536 * 60.00322 * 22 20 19 43 43 H 1.09004 * 109.46682 * 180.02562 * 22 20 19 44 44 H 1.09002 * 109.47291 * 299.99460 * 22 20 19 45 45 H 1.08996 * 109.46841 * 60.00615 * 23 20 19 46 46 H 1.08994 * 109.46699 * 179.97438 * 23 20 19 47 47 H 1.09002 * 109.47138 * 300.00224 * 23 20 19 48 48 H 1.08000 * 119.99991 * 180.02562 * 24 19 18 49 49 H 1.08006 * 120.00546 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4249 1.4465 0.4240 5 6 3.5327 1.0281 1.8678 6 1 2.6461 0.7444 2.4154 7 6 4.7633 1.0065 2.4892 8 7 5.8429 1.3514 1.8221 9 14 4.8968 0.4886 4.2790 10 1 4.3935 -0.9003 4.4312 11 1 6.3174 0.5495 4.7072 12 1 4.0857 1.4040 5.1210 13 6 1.8401 2.0068 -1.3188 14 1 2.2268 1.3409 -2.0902 15 6 2.5987 3.3347 -1.3640 16 6 0.3739 2.2575 -1.5604 17 6 -0.4103 2.7938 -0.5563 18 6 -1.7543 3.0277 -0.7794 19 6 -2.3161 2.7169 -2.0035 20 6 -3.7821 2.9686 -2.2455 21 6 -4.4769 1.6485 -2.5853 22 6 -4.4116 3.5667 -0.9858 23 6 -3.9462 3.9460 -3.4112 24 6 -1.5330 2.1758 -3.0060 25 6 -0.1880 1.9459 -2.7843 26 1 -0.3634 -1.0087 0.1964 27 1 -0.3632 0.6745 0.7753 28 1 -0.3633 0.3343 -0.9718 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7937 2.4660 0.3127 32 1 4.0207 0.7750 -0.1943 33 1 6.7086 1.3366 2.2595 34 1 3.6593 3.1534 -1.1893 35 1 2.4651 3.7964 -2.3424 36 1 2.2120 4.0005 -0.5925 37 1 0.0277 3.0327 0.4016 38 1 -2.3660 3.4509 0.0037 39 1 -4.3600 0.9520 -1.7550 40 1 -5.5373 1.8303 -2.7600 41 1 -4.0283 1.2223 -3.4827 42 1 -3.9167 4.5072 -0.7437 43 1 -5.4721 3.7482 -1.1608 44 1 -4.2948 2.8703 -0.1555 45 1 -3.4978 3.5198 -4.3085 46 1 -5.0065 4.1276 -3.5865 47 1 -3.4512 4.8865 -3.1691 48 1 -1.9718 1.9333 -3.9626 49 1 0.4238 1.5231 -3.5675 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531142890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = 13.825004 kcal Electronic energy + Delta-G solvation = -23978.943795 eV Core-core repulsion = 20905.364999 eV Total energy + Delta-G solvation = -3073.578796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99558 -37.87503 -35.70021 -32.71097 -31.75917 -30.81598 -30.04685 -27.77352 -27.42937 -27.36101 -26.16990 -23.63316 -22.20616 -22.06031 -21.29122 -19.37342 -18.84346 -16.76056 -16.09274 -15.29222 -14.89817 -14.78600 -14.40249 -14.32186 -14.16105 -13.96391 -13.48223 -13.24520 -13.03733 -12.76986 -12.64994 -12.21485 -12.12892 -11.93150 -11.89523 -11.80091 -11.58576 -11.38929 -11.23697 -11.04972 -10.98934 -10.85819 -10.75486 -10.63794 -10.46004 -10.34233 -10.27876 -9.96130 -9.58223 -9.16581 -8.54545 -8.40042 -8.01976 -7.20885 -6.00960 -4.01366 1.66839 1.76229 3.34347 3.38385 3.41439 4.06177 4.44019 4.58356 4.70017 4.89849 4.92491 5.22170 5.25613 5.28251 5.35118 5.36561 5.45744 5.48399 5.64226 5.73010 5.74486 5.75078 5.82094 5.85225 5.86829 5.91791 5.95825 5.98553 6.05046 6.15910 6.19701 6.20074 6.31012 6.32689 6.44475 6.49178 6.52301 6.72420 6.80064 6.82190 6.91616 6.92566 7.08802 7.35744 7.38818 7.40642 7.83724 8.13947 8.26741 8.59732 9.06190 9.62260 11.09827 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.003656 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.292900 B = 7657.806180 C = 7981.600944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 N -0.526 5.526 4 C 0.185 3.815 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.115 3.885 14 H 0.035 0.965 15 C -0.143 4.143 16 C -0.054 4.054 17 C -0.082 4.082 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.027 4.027 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.125 4.125 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.043 0.957 32 H -0.012 1.012 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.112 0.888 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.041 3.254 -10.023 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 N -0.251 5.251 4 C 0.061 3.939 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.006 3.994 14 H 0.053 0.947 15 C -0.200 4.200 16 C -0.055 4.055 17 C -0.100 4.100 18 C -0.145 4.145 19 C -0.084 4.084 20 C -0.027 4.027 21 C -0.194 4.194 22 C -0.200 4.200 23 C -0.194 4.194 24 C -0.139 4.139 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.006 0.994 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.130 0.870 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.100 3.540 -9.656 20.818 hybrid contribution 0.763 -0.853 0.355 1.198 sum -17.338 2.687 -9.301 19.857 Atomic orbital electron populations 1.22137 0.96608 1.00042 1.01950 1.21961 0.94300 0.90116 1.00559 1.62189 1.24068 1.16393 1.22488 1.19882 0.81250 0.97459 0.95336 1.21142 0.92998 1.44270 0.96014 0.91974 1.24966 0.95754 0.95680 0.98156 1.69944 0.98493 1.48775 1.36700 0.86590 0.76798 0.79109 0.85079 1.20349 1.21423 1.20196 1.20535 0.90569 0.96131 0.92123 0.94725 1.21960 1.01207 0.96156 1.00723 1.19898 0.95734 0.96675 0.93144 1.21088 0.92815 0.96809 0.99295 1.21140 0.95302 1.01384 0.96678 1.19641 0.94359 1.00141 0.94278 1.19442 0.91705 0.95663 0.95909 1.21876 0.99554 0.96309 1.01684 1.21950 0.99991 1.00956 0.97114 1.21876 1.01163 0.98966 0.97384 1.20746 0.93640 1.00967 0.98509 1.20953 0.94911 1.01452 0.97022 0.94267 0.92102 0.92660 0.96681 0.89895 0.93913 0.99445 0.92932 0.90990 0.93481 0.91894 0.85123 0.86284 0.92480 0.92760 0.92584 0.92265 0.92791 0.92204 0.92587 0.92755 0.92548 0.87042 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.40 37.16 0.31 -2.24 16 2 C 0.06 1.18 5.53 -3.83 -0.02 1.16 16 3 N -0.53 -11.13 3.84 -229.47 -0.88 -12.01 16 4 C 0.19 4.73 4.21 -4.98 -0.02 4.71 16 5 C -0.51 -14.04 8.26 -34.44 -0.28 -14.32 16 6 H 0.06 1.71 7.28 -52.48 -0.38 1.33 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.12 2.10 2.33 -68.86 -0.16 1.94 16 14 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 15 C -0.14 -2.52 8.37 37.15 0.31 -2.21 16 16 C -0.05 -0.85 2.56 -104.62 -0.27 -1.12 16 17 C -0.08 -1.27 6.90 -39.58 -0.27 -1.55 16 18 C -0.13 -1.70 8.98 -39.59 -0.36 -2.06 16 19 C -0.08 -1.03 4.76 -104.62 -0.50 -1.52 16 20 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 21 C -0.14 -1.24 8.29 37.16 0.31 -0.93 16 22 C -0.14 -1.29 7.13 37.16 0.26 -1.02 16 23 C -0.14 -1.20 8.29 37.16 0.31 -0.89 16 24 C -0.12 -1.51 8.71 -39.58 -0.34 -1.86 16 25 C -0.12 -1.76 8.85 -39.59 -0.35 -2.11 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.07 7.17 -51.93 -0.37 0.69 16 28 H 0.05 0.91 4.95 -51.93 -0.26 0.65 16 29 H 0.01 0.30 7.83 -51.93 -0.41 -0.11 16 30 H 0.08 1.83 6.58 -51.93 -0.34 1.48 16 31 H 0.04 1.14 5.55 -51.93 -0.29 0.85 16 32 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 1.40 6.13 -51.93 -0.32 1.08 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 37 H 0.13 2.23 7.85 -52.48 -0.41 1.82 16 38 H 0.12 1.42 5.90 -52.48 -0.31 1.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 42 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.56 7.51 -51.93 -0.39 0.16 16 45 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.11 1.20 7.10 -52.49 -0.37 0.82 16 49 H 0.11 1.47 8.01 -52.48 -0.42 1.05 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -28.67 369.24 -9.67 -38.34 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.76 Total: 0.25 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.30 Total: -22.95 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.14 Total: -37.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.67 -9.67 -38.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531142890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.166 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds