Wall clock time and date at job start Tue Mar 31 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47538 * 2 1 4 4 C 1.46896 * 111.00379 * 161.99114 * 3 2 1 5 5 C 1.50705 * 109.47092 * 293.95362 * 4 3 2 6 6 H 1.08004 * 119.99384 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00044 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99969 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46727 * 60.00074 * 9 7 5 11 11 H 1.48492 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47256 * 300.00611 * 9 7 5 13 13 C 1.46907 * 110.99937 * 285.94178 * 3 2 1 14 14 H 1.09004 * 109.46914 * 310.97241 * 13 3 2 15 15 C 1.52994 * 109.47305 * 190.96844 * 13 3 2 16 16 C 1.50704 * 109.47010 * 70.96940 * 13 3 2 17 17 C 1.38234 * 120.00025 * 44.22117 * 16 13 3 18 18 C 1.38234 * 119.99675 * 179.78954 * 17 16 13 19 19 C 1.38223 * 120.00355 * 0.44248 * 18 17 16 20 20 C 1.50703 * 120.00335 * 179.83548 * 19 18 17 21 21 C 1.52996 * 109.47339 * 239.97555 * 20 19 18 22 22 C 1.52997 * 109.46746 * 359.97438 * 20 19 18 23 23 C 1.53006 * 109.47104 * 119.97491 * 20 19 18 24 24 C 1.38245 * 119.99869 * 359.81011 * 19 18 17 25 25 C 1.38229 * 119.99752 * 224.49595 * 16 13 3 26 26 H 1.08996 * 109.47499 * 191.01598 * 1 2 3 27 27 H 1.08998 * 109.46585 * 311.02281 * 1 2 3 28 28 H 1.09000 * 109.46938 * 71.01880 * 1 2 3 29 29 H 1.09000 * 109.46703 * 239.99710 * 2 1 3 30 30 H 1.09000 * 109.47228 * 120.00381 * 2 1 3 31 31 H 1.08994 * 109.47906 * 173.95360 * 4 3 2 32 32 H 1.09004 * 109.47055 * 53.94688 * 4 3 2 33 33 H 0.97002 * 119.99635 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47240 * 60.00180 * 15 13 3 35 35 H 1.09002 * 109.47550 * 180.02562 * 15 13 3 36 36 H 1.09005 * 109.46971 * 300.00266 * 15 13 3 37 37 H 1.08003 * 119.99673 * 359.97438 * 17 16 13 38 38 H 1.08004 * 119.99305 * 180.27732 * 18 17 16 39 39 H 1.09006 * 109.47177 * 59.99540 * 21 20 19 40 40 H 1.08994 * 109.47666 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.46941 * 300.00269 * 21 20 19 42 42 H 1.08998 * 109.47536 * 60.00322 * 22 20 19 43 43 H 1.09004 * 109.46682 * 180.02562 * 22 20 19 44 44 H 1.09002 * 109.47291 * 299.99460 * 22 20 19 45 45 H 1.08996 * 109.46841 * 60.00615 * 23 20 19 46 46 H 1.08994 * 109.46699 * 179.97438 * 23 20 19 47 47 H 1.09002 * 109.47138 * 300.00224 * 23 20 19 48 48 H 1.08000 * 119.99991 * 180.02562 * 24 19 18 49 49 H 1.08006 * 120.00546 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4249 1.4465 0.4240 5 6 3.5327 1.0281 1.8678 6 1 2.6461 0.7444 2.4154 7 6 4.7633 1.0065 2.4892 8 7 5.8429 1.3514 1.8221 9 14 4.8968 0.4886 4.2790 10 1 4.3935 -0.9003 4.4312 11 1 6.3174 0.5495 4.7072 12 1 4.0857 1.4040 5.1210 13 6 1.8401 2.0068 -1.3188 14 1 2.2268 1.3409 -2.0902 15 6 2.5987 3.3347 -1.3640 16 6 0.3739 2.2575 -1.5604 17 6 -0.4103 2.7938 -0.5563 18 6 -1.7543 3.0277 -0.7794 19 6 -2.3161 2.7169 -2.0035 20 6 -3.7821 2.9686 -2.2455 21 6 -4.4769 1.6485 -2.5853 22 6 -4.4116 3.5667 -0.9858 23 6 -3.9462 3.9460 -3.4112 24 6 -1.5330 2.1758 -3.0060 25 6 -0.1880 1.9459 -2.7843 26 1 -0.3634 -1.0087 0.1964 27 1 -0.3632 0.6745 0.7753 28 1 -0.3633 0.3343 -0.9718 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7937 2.4660 0.3127 32 1 4.0207 0.7750 -0.1943 33 1 6.7086 1.3366 2.2595 34 1 3.6593 3.1534 -1.1893 35 1 2.4651 3.7964 -2.3424 36 1 2.2120 4.0005 -0.5925 37 1 0.0277 3.0327 0.4016 38 1 -2.3660 3.4509 0.0037 39 1 -4.3600 0.9520 -1.7550 40 1 -5.5373 1.8303 -2.7600 41 1 -4.0283 1.2223 -3.4827 42 1 -3.9167 4.5072 -0.7437 43 1 -5.4721 3.7482 -1.1608 44 1 -4.2948 2.8703 -0.1555 45 1 -3.4978 3.5198 -4.3085 46 1 -5.0065 4.1276 -3.5865 47 1 -3.4512 4.8865 -3.1691 48 1 -1.9718 1.9333 -3.9626 49 1 0.4238 1.5231 -3.5675 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531142890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:24 Heat of formation + Delta-G solvation = 0.368400 kcal Electronic energy + Delta-G solvation = -23979.527317 eV Core-core repulsion = 20905.364999 eV Total energy + Delta-G solvation = -3074.162318 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12221 -39.19716 -36.87048 -34.76828 -33.23685 -31.88417 -31.57662 -29.22060 -28.16149 -28.02563 -28.01374 -25.16822 -23.79506 -23.27740 -22.64488 -20.76915 -19.89549 -18.64698 -17.36930 -16.79512 -16.55301 -16.14387 -15.83126 -15.54500 -15.22187 -15.05165 -14.66880 -14.40445 -14.26425 -14.19826 -13.98073 -13.60726 -13.56762 -13.15036 -12.95382 -12.87096 -12.76145 -12.72756 -12.50554 -12.48126 -12.37808 -12.28908 -12.21961 -12.00829 -11.82687 -11.62880 -11.50269 -11.28124 -11.22902 -11.13498 -10.56388 -9.63756 -9.16679 -8.98777 -8.18716 -6.27498 0.56613 0.66896 1.40274 1.43094 1.50967 2.40510 2.94898 3.13539 3.30673 3.74065 3.91786 3.96984 4.16439 4.20435 4.26573 4.29738 4.39250 4.41549 4.49257 4.55347 4.69027 4.70871 4.73262 4.84408 4.85646 4.91316 4.96950 4.97040 5.01193 5.08435 5.09952 5.14521 5.18393 5.18917 5.23207 5.26445 5.33518 5.34655 5.41766 5.45736 5.47744 5.52018 5.66531 5.72636 5.87900 5.92620 6.11358 6.25741 6.41090 6.70441 6.88847 7.41264 8.91953 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.003656 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.292900 B = 7657.806180 C = 7981.600944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 N -0.527 5.527 4 C 0.201 3.799 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.115 3.885 14 H 0.030 0.970 15 C -0.136 4.136 16 C -0.068 4.068 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.076 4.076 20 C -0.027 4.027 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.057 0.943 31 H 0.026 0.974 32 H -0.047 1.047 33 H 0.264 0.736 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.136 0.864 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 3.169 -10.632 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 N -0.252 5.252 4 C 0.075 3.925 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.007 3.993 14 H 0.048 0.952 15 C -0.193 4.193 16 C -0.069 4.069 17 C -0.112 4.112 18 C -0.146 4.146 19 C -0.077 4.077 20 C -0.027 4.027 21 C -0.193 4.193 22 C -0.201 4.201 23 C -0.192 4.192 24 C -0.134 4.134 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.044 0.956 32 H -0.029 1.029 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.154 0.846 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.985 3.455 -10.273 23.619 hybrid contribution 1.583 -0.797 0.462 1.832 sum -19.402 2.657 -9.811 21.904 Atomic orbital electron populations 1.21981 0.93745 1.01062 1.02277 1.21955 0.96506 0.89156 0.99215 1.62152 1.20927 1.17323 1.24798 1.19535 0.83407 0.95364 0.94162 1.21445 0.93141 1.44293 0.97067 0.92210 1.25852 0.95310 0.95538 1.02784 1.70074 0.99024 1.49726 1.38638 0.85497 0.77000 0.79033 0.79457 1.19450 1.20861 1.19363 1.20575 0.92861 0.95711 0.90155 0.95224 1.21872 0.99304 0.96160 1.01980 1.19608 0.93969 0.98853 0.94426 1.20928 0.93894 0.97981 0.98363 1.21276 0.94388 1.01164 0.97748 1.19985 0.95879 0.98376 0.93418 1.19518 0.89882 0.96578 0.96770 1.21871 1.00557 0.95448 1.01426 1.21957 1.00958 1.00591 0.96584 1.21867 1.02283 0.98232 0.96857 1.21009 0.92861 0.99945 0.99555 1.21081 0.95862 1.01239 0.96365 0.92392 0.92727 0.91748 0.96837 0.92400 0.95591 1.02885 0.92771 0.93649 0.90753 0.92624 0.87492 0.85029 0.93352 0.91110 0.92278 0.92572 0.91198 0.92703 0.92266 0.91123 0.93235 0.84593 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.40 71.98 0.60 -3.84 16 2 C 0.06 2.46 5.53 86.30 0.48 2.94 16 3 N -0.53 -23.24 3.84 -879.92 -3.38 -26.62 16 4 C 0.20 10.85 4.21 85.56 0.36 11.21 16 5 C -0.52 -29.96 8.26 25.60 0.21 -29.75 16 6 H 0.06 3.39 7.28 -2.91 -0.02 3.37 16 7 C 0.00 0.17 5.46 84.66 0.46 0.64 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.12 4.32 2.33 44.17 0.10 4.42 16 14 H 0.03 1.14 7.67 -2.38 -0.02 1.12 16 15 C -0.14 -4.97 8.37 71.98 0.60 -4.37 16 16 C -0.07 -2.13 2.56 -19.87 -0.05 -2.18 16 17 C -0.09 -2.88 6.90 22.27 0.15 -2.72 16 18 C -0.13 -3.23 8.98 22.27 0.20 -3.03 16 19 C -0.08 -1.67 4.76 -19.87 -0.09 -1.76 16 20 C -0.03 -0.45 0.85 -52.93 -0.05 -0.49 16 21 C -0.14 -1.98 8.29 71.98 0.60 -1.38 16 22 C -0.14 -2.18 7.13 71.98 0.51 -1.67 16 23 C -0.14 -1.91 8.29 71.98 0.60 -1.31 16 24 C -0.12 -2.57 8.71 22.27 0.19 -2.37 16 25 C -0.13 -3.35 8.85 22.27 0.20 -3.15 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.89 7.17 -2.39 -0.02 1.87 16 28 H 0.06 2.04 4.95 -2.39 -0.01 2.02 16 29 H 0.01 0.55 7.83 -2.39 -0.02 0.53 16 30 H 0.06 2.64 6.58 -2.39 -0.02 2.62 16 31 H 0.03 1.48 5.55 -2.39 -0.01 1.47 16 32 H -0.05 -2.77 8.12 -2.39 -0.02 -2.79 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.04 1.87 6.13 -2.39 -0.01 1.86 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 2.08 8.12 -2.38 -0.02 2.06 16 37 H 0.11 3.78 7.85 -2.91 -0.02 3.76 16 38 H 0.13 2.94 5.90 -2.91 -0.02 2.92 16 39 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 42 H 0.06 0.88 7.51 -2.39 -0.02 0.87 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.89 7.51 -2.39 -0.02 0.87 16 45 H 0.06 0.80 7.39 -2.39 -0.02 0.78 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.14 2.37 7.10 -2.91 -0.02 2.35 16 49 H 0.12 2.96 8.01 -2.91 -0.02 2.93 16 Total: -1.00 -63.23 369.24 4.90 -58.33 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.89 Total: 16.65 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 5.08 Total: -38.83 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -3.09 Total: -83.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.23 4.90 -58.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531142890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.696 kcal (2) G-P(sol) polarization free energy of solvation -63.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds