Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 120.00163 * 2 1 4 4 C 1.38233 * 120.00424 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99760 * 0.25578 * 4 3 2 6 6 C 1.50699 * 120.00064 * 179.72574 * 5 4 3 7 7 C 1.53003 * 109.47069 * 89.99832 * 6 5 4 8 8 N 1.46902 * 109.47242 * 183.81682 * 7 6 5 9 9 C 1.46897 * 111.00029 * 166.77410 * 8 7 6 10 10 C 1.50703 * 109.46800 * 193.59437 * 9 8 7 11 11 H 1.07998 * 120.00265 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99650 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99879 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47550 * 60.00063 * 14 12 10 16 16 H 1.48497 * 109.47534 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47068 * 300.00284 * 14 12 10 18 18 C 1.46900 * 110.99986 * 290.72837 * 8 7 6 19 19 C 1.52998 * 109.47090 * 318.75371 * 18 8 7 20 20 C 1.52996 * 109.47733 * 77.51778 * 19 18 8 21 21 C 1.53006 * 109.47338 * 197.51984 * 19 18 8 22 22 C 1.53002 * 109.47056 * 317.51656 * 19 18 8 23 23 C 1.38237 * 119.99899 * 359.48678 * 5 4 3 24 24 C 1.38236 * 119.99881 * 0.49156 * 23 5 4 25 25 H 1.09002 * 109.47319 * 89.99868 * 1 2 3 26 26 H 1.08998 * 109.47170 * 210.00107 * 1 2 3 27 27 H 1.09005 * 109.47216 * 330.00022 * 1 2 3 28 28 H 1.08003 * 120.00231 * 359.97432 * 3 2 1 29 29 H 1.07994 * 120.00540 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.47013 * 209.99891 * 6 5 4 31 31 H 1.08999 * 109.47280 * 329.99919 * 6 5 4 32 32 H 1.08997 * 109.46916 * 303.81874 * 7 6 5 33 33 H 1.09004 * 109.46897 * 63.81666 * 7 6 5 34 34 H 1.08999 * 109.46777 * 313.58896 * 9 8 7 35 35 H 1.08996 * 109.47362 * 73.59536 * 9 8 7 36 36 H 0.96999 * 120.00168 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47315 * 78.75253 * 18 8 7 38 38 H 1.08999 * 109.47190 * 198.75053 * 18 8 7 39 39 H 1.08999 * 109.47163 * 58.17460 * 20 19 18 40 40 H 1.08995 * 109.47493 * 178.17744 * 20 19 18 41 41 H 1.09001 * 109.46883 * 298.18373 * 20 19 18 42 42 H 1.08999 * 109.46883 * 59.99588 * 21 19 18 43 43 H 1.08997 * 109.47341 * 179.97438 * 21 19 18 44 44 H 1.08997 * 109.46520 * 300.00093 * 21 19 18 45 45 H 1.09002 * 109.47181 * 66.86769 * 22 19 18 46 46 H 1.09001 * 109.47510 * 186.86304 * 22 19 18 47 47 H 1.09000 * 109.47143 * 306.86697 * 22 19 18 48 48 H 1.07996 * 120.00354 * 180.25383 * 23 5 4 49 49 H 1.08003 * 120.00203 * 179.76203 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0064 6 6 5.7786 0.0000 -0.0132 7 6 6.2952 -0.0033 1.4270 8 7 7.7613 0.0889 1.4216 9 6 8.2740 0.4024 2.7620 10 6 9.7199 0.8155 2.6628 11 1 10.2089 0.8429 1.7003 12 6 10.4181 1.1595 3.8009 13 7 9.8225 1.1267 4.9730 14 14 12.2101 1.6723 3.6779 15 1 12.3232 2.8728 2.8111 16 1 12.7285 1.9891 5.0329 17 1 13.0035 0.5622 3.0919 18 6 8.3645 -1.1459 0.9027 19 6 7.6112 -2.3550 1.4606 20 6 6.2951 -2.5312 0.7006 21 6 8.4684 -3.6114 1.2940 22 6 7.3167 -2.1318 2.9453 23 6 3.5805 -1.1972 -0.0010 24 6 2.1981 -1.1972 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1324 -0.0010 30 1 6.1396 -0.8889 -0.5308 31 1 6.1397 0.8911 -0.5267 32 1 5.8794 0.8493 1.9639 33 1 5.9910 -0.9266 1.9199 34 1 7.6919 1.2174 3.1922 35 1 8.1907 -0.4788 3.3981 36 1 10.3138 1.3683 5.7736 37 1 8.3038 -1.1505 -0.1856 38 1 9.4095 -1.1961 1.2084 39 1 6.5032 -2.6579 -0.3618 40 1 5.7736 -3.4116 1.0762 41 1 5.6709 -1.6496 0.8458 42 1 9.4060 -3.4859 1.8355 43 1 7.9319 -4.4728 1.6918 44 1 8.6782 -3.7704 0.2362 45 1 6.6081 -1.3110 3.0558 46 1 6.8902 -3.0398 3.3717 47 1 8.2420 -1.8857 3.4662 48 1 4.1204 -2.1325 -0.0015 49 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532967400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = 74.421430 kcal Electronic energy + Delta-G solvation = -24187.597833 eV Core-core repulsion = 21116.646696 eV Total energy + Delta-G solvation = -3070.951138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32392 -38.89989 -34.36819 -33.80255 -32.21935 -30.94462 -30.37495 -27.60638 -27.22498 -26.50003 -25.93282 -24.37406 -22.61235 -22.23500 -20.52019 -20.07110 -18.37731 -16.35342 -16.16216 -15.88693 -15.10853 -14.97183 -14.71364 -14.44073 -14.00299 -13.85732 -13.47065 -13.39511 -13.09827 -12.94472 -12.44437 -12.42448 -12.18842 -12.14536 -11.79664 -11.56590 -11.24931 -11.07554 -11.02968 -10.93931 -10.88427 -10.71741 -10.67122 -10.63914 -10.18264 -10.13772 -9.86200 -9.64103 -9.44632 -9.13750 -8.84244 -8.35193 -8.33166 -6.87382 -5.96304 -3.95852 1.41263 1.48073 3.35877 3.40089 3.43202 3.81532 4.46695 4.80032 4.84093 4.92614 5.08002 5.17870 5.24683 5.27834 5.31115 5.38586 5.45346 5.51422 5.55153 5.58746 5.71336 5.74801 5.81814 5.89530 5.97847 6.02277 6.06878 6.11240 6.13616 6.19332 6.25847 6.33582 6.35175 6.40093 6.46748 6.51221 6.63013 6.65003 6.66694 6.77578 6.87401 6.93347 6.97349 7.11433 7.38570 7.56149 7.88621 8.20612 8.33078 8.66004 9.11204 9.66668 11.13706 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.004023 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.869330 B = 6959.174078 C = 7765.057726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.074 4.074 6 C -0.096 4.096 7 C 0.023 3.977 8 N -0.530 5.530 9 C 0.161 3.839 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.071 3.929 19 C -0.097 4.097 20 C -0.196 4.196 21 C -0.135 4.135 22 C -0.163 4.163 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.032 0.968 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.083 0.917 48 H 0.127 0.873 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 -6.199 -9.647 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.074 4.074 6 C -0.133 4.133 7 C -0.104 4.104 8 N -0.253 5.253 9 C 0.036 3.964 10 C -0.540 4.540 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.204 1.204 18 C -0.058 4.058 19 C -0.099 4.099 20 C -0.251 4.251 21 C -0.193 4.193 22 C -0.220 4.220 23 C -0.142 4.142 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.101 0.899 48 H 0.145 0.855 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.496 -5.749 -9.754 18.393 hybrid contribution 0.823 -0.326 0.579 1.058 sum -13.673 -6.075 -9.175 17.551 Atomic orbital electron populations 1.20753 0.91619 1.02506 1.01944 1.19857 0.95775 0.93363 1.01098 1.20999 0.94254 0.97303 1.01219 1.21118 0.93958 0.98010 0.99897 1.20038 0.96252 0.92932 0.98218 1.21058 0.89311 1.03947 0.98979 1.23007 0.91004 1.01813 0.94590 1.62264 1.02664 1.31591 1.28756 1.20451 0.95191 0.97007 0.83717 1.21159 0.95621 1.44120 0.93114 0.92228 1.24947 0.98216 0.96089 0.95371 1.69941 1.36649 1.49465 0.97981 0.86632 0.85206 0.79103 0.76863 1.20309 1.21493 1.20401 1.22180 0.99365 0.86490 0.97782 1.21162 0.95730 0.96910 0.96087 1.23488 0.98651 1.03796 0.99200 1.21810 0.99829 0.96750 1.00882 1.22708 1.03338 1.00634 0.95273 1.21306 0.94117 0.98157 1.00615 1.20988 0.94249 0.97258 1.01359 0.91546 0.91806 0.91772 0.86430 0.85925 0.89699 0.90632 0.92120 0.90816 0.96025 0.95041 0.93038 0.92929 0.90020 0.93148 0.94057 0.86912 0.92514 0.93614 0.93268 0.90880 0.94456 0.89859 0.85504 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.10 -1.13 5.88 -104.63 -0.62 -1.74 16 3 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 4 C -0.11 -1.46 9.70 -39.58 -0.38 -1.85 16 5 C -0.07 -1.01 5.06 -104.62 -0.53 -1.54 16 6 C -0.10 -1.42 4.50 -27.88 -0.13 -1.54 16 7 C 0.02 0.41 3.73 -3.82 -0.01 0.40 16 8 N -0.53 -11.02 4.65 -236.07 -1.10 -12.12 16 9 C 0.16 4.04 4.15 -4.98 -0.02 4.02 16 10 C -0.50 -13.88 8.26 -34.44 -0.28 -14.17 16 11 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 12 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 13 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.07 1.32 4.58 -3.82 -0.02 1.30 16 19 C -0.10 -1.57 0.77 -154.51 -0.12 -1.69 16 20 C -0.20 -2.71 4.84 37.16 0.18 -2.53 16 21 C -0.13 -1.97 8.40 37.16 0.31 -1.66 16 22 C -0.16 -2.94 6.54 37.16 0.24 -2.69 16 23 C -0.12 -1.56 9.01 -39.58 -0.36 -1.92 16 24 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.08 1.21 4.38 -51.93 -0.23 0.98 16 31 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 33 H 0.07 1.27 2.31 -51.93 -0.12 1.15 16 34 H 0.02 0.60 7.81 -51.93 -0.41 0.19 16 35 H 0.03 0.81 3.45 -51.93 -0.18 0.63 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 0.91 7.47 -51.93 -0.39 0.52 16 38 H 0.08 1.72 6.74 -51.93 -0.35 1.38 16 39 H 0.05 0.65 7.32 -51.93 -0.38 0.27 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 1.58 0.86 -51.93 -0.04 1.54 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.37 4.08 -51.93 -0.21 1.16 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.76 6.14 -51.93 -0.32 1.44 16 48 H 0.13 1.47 5.65 -52.49 -0.30 1.18 16 49 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -29.05 356.29 -10.18 -39.22 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.93 Total: 4.88 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -2.24 Total: -28.29 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.36 Total: -37.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.05 -10.18 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532967400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.644 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds