Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 120.00163 * 2 1 4 4 C 1.38233 * 120.00424 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99760 * 0.25578 * 4 3 2 6 6 C 1.50699 * 120.00064 * 179.72574 * 5 4 3 7 7 C 1.53003 * 109.47069 * 89.99832 * 6 5 4 8 8 N 1.46902 * 109.47242 * 183.81682 * 7 6 5 9 9 C 1.46897 * 111.00029 * 166.77410 * 8 7 6 10 10 C 1.50703 * 109.46800 * 193.59437 * 9 8 7 11 11 H 1.07998 * 120.00265 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99650 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99879 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47550 * 60.00063 * 14 12 10 16 16 H 1.48497 * 109.47534 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47068 * 300.00284 * 14 12 10 18 18 C 1.46900 * 110.99986 * 290.72837 * 8 7 6 19 19 C 1.52998 * 109.47090 * 318.75371 * 18 8 7 20 20 C 1.52996 * 109.47733 * 77.51778 * 19 18 8 21 21 C 1.53006 * 109.47338 * 197.51984 * 19 18 8 22 22 C 1.53002 * 109.47056 * 317.51656 * 19 18 8 23 23 C 1.38237 * 119.99899 * 359.48678 * 5 4 3 24 24 C 1.38236 * 119.99881 * 0.49156 * 23 5 4 25 25 H 1.09002 * 109.47319 * 89.99868 * 1 2 3 26 26 H 1.08998 * 109.47170 * 210.00107 * 1 2 3 27 27 H 1.09005 * 109.47216 * 330.00022 * 1 2 3 28 28 H 1.08003 * 120.00231 * 359.97432 * 3 2 1 29 29 H 1.07994 * 120.00540 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.47013 * 209.99891 * 6 5 4 31 31 H 1.08999 * 109.47280 * 329.99919 * 6 5 4 32 32 H 1.08997 * 109.46916 * 303.81874 * 7 6 5 33 33 H 1.09004 * 109.46897 * 63.81666 * 7 6 5 34 34 H 1.08999 * 109.46777 * 313.58896 * 9 8 7 35 35 H 1.08996 * 109.47362 * 73.59536 * 9 8 7 36 36 H 0.96999 * 120.00168 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47315 * 78.75253 * 18 8 7 38 38 H 1.08999 * 109.47190 * 198.75053 * 18 8 7 39 39 H 1.08999 * 109.47163 * 58.17460 * 20 19 18 40 40 H 1.08995 * 109.47493 * 178.17744 * 20 19 18 41 41 H 1.09001 * 109.46883 * 298.18373 * 20 19 18 42 42 H 1.08999 * 109.46883 * 59.99588 * 21 19 18 43 43 H 1.08997 * 109.47341 * 179.97438 * 21 19 18 44 44 H 1.08997 * 109.46520 * 300.00093 * 21 19 18 45 45 H 1.09002 * 109.47181 * 66.86769 * 22 19 18 46 46 H 1.09001 * 109.47510 * 186.86304 * 22 19 18 47 47 H 1.09000 * 109.47143 * 306.86697 * 22 19 18 48 48 H 1.07996 * 120.00354 * 180.25383 * 23 5 4 49 49 H 1.08003 * 120.00203 * 179.76203 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0064 6 6 5.7786 0.0000 -0.0132 7 6 6.2952 -0.0033 1.4270 8 7 7.7613 0.0889 1.4216 9 6 8.2740 0.4024 2.7620 10 6 9.7199 0.8155 2.6628 11 1 10.2089 0.8429 1.7003 12 6 10.4181 1.1595 3.8009 13 7 9.8225 1.1267 4.9730 14 14 12.2101 1.6723 3.6779 15 1 12.3232 2.8728 2.8111 16 1 12.7285 1.9891 5.0329 17 1 13.0035 0.5622 3.0919 18 6 8.3645 -1.1459 0.9027 19 6 7.6112 -2.3550 1.4606 20 6 6.2951 -2.5312 0.7006 21 6 8.4684 -3.6114 1.2940 22 6 7.3167 -2.1318 2.9453 23 6 3.5805 -1.1972 -0.0010 24 6 2.1981 -1.1972 0.0000 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1324 -0.0010 30 1 6.1396 -0.8889 -0.5308 31 1 6.1397 0.8911 -0.5267 32 1 5.8794 0.8493 1.9639 33 1 5.9910 -0.9266 1.9199 34 1 7.6919 1.2174 3.1922 35 1 8.1907 -0.4788 3.3981 36 1 10.3138 1.3683 5.7736 37 1 8.3038 -1.1505 -0.1856 38 1 9.4095 -1.1961 1.2084 39 1 6.5032 -2.6579 -0.3618 40 1 5.7736 -3.4116 1.0762 41 1 5.6709 -1.6496 0.8458 42 1 9.4060 -3.4859 1.8355 43 1 7.9319 -4.4728 1.6918 44 1 8.6782 -3.7704 0.2362 45 1 6.6081 -1.3110 3.0558 46 1 6.8902 -3.0398 3.3717 47 1 8.2420 -1.8857 3.4662 48 1 4.1204 -2.1325 -0.0015 49 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532967400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = 59.683716 kcal Electronic energy + Delta-G solvation = -24188.236909 eV Core-core repulsion = 21116.646696 eV Total energy + Delta-G solvation = -3071.590213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64620 -39.96462 -35.56174 -35.46685 -34.02375 -31.89952 -31.52370 -29.23463 -28.56827 -27.94385 -27.14640 -25.81706 -23.83141 -23.52553 -21.83593 -21.38642 -19.72945 -18.44774 -17.33063 -17.13609 -16.57902 -16.15721 -16.04339 -15.80907 -15.51193 -15.08782 -14.64792 -14.56514 -14.25933 -14.13088 -13.97739 -13.55821 -13.45165 -13.11821 -12.94452 -12.87215 -12.79663 -12.71971 -12.48539 -12.39863 -12.20815 -12.11619 -11.97229 -11.93881 -11.88873 -11.57274 -11.44442 -11.18669 -11.02155 -10.89328 -10.49009 -9.76533 -9.30686 -8.55641 -8.12554 -6.21318 0.47554 0.55737 1.39865 1.42439 1.50102 2.42176 2.87345 3.17378 3.43394 3.90306 3.95783 3.97234 4.02084 4.11191 4.18795 4.21956 4.26960 4.43505 4.57670 4.62333 4.64137 4.71149 4.72203 4.75446 4.86326 4.88312 4.89904 4.92983 4.97574 5.01655 5.06303 5.10073 5.16197 5.23140 5.27283 5.33165 5.34208 5.36064 5.42796 5.51395 5.56336 5.60327 5.63204 5.73569 5.76050 5.83886 6.18072 6.20365 6.52505 6.79175 6.95339 7.45986 8.95450 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.004023 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.869330 B = 6959.174078 C = 7765.057726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.080 4.080 7 C 0.029 3.971 8 N -0.542 5.542 9 C 0.174 3.826 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.072 3.928 19 C -0.094 4.094 20 C -0.191 4.191 21 C -0.131 4.131 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.126 4.126 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.085 0.915 34 H -0.017 1.017 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.138 0.862 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 -7.855 -11.238 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.147 4.147 5 C -0.093 4.093 6 C -0.117 4.117 7 C -0.098 4.098 8 N -0.264 5.264 9 C 0.048 3.952 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.786 3.214 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.056 4.056 19 C -0.095 4.095 20 C -0.246 4.246 21 C -0.189 4.189 22 C -0.213 4.213 23 C -0.146 4.146 24 C -0.144 4.144 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.001 0.999 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.156 0.844 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.822 -7.412 -11.367 20.845 hybrid contribution 1.144 0.194 1.073 1.581 sum -14.678 -7.218 -10.294 19.326 Atomic orbital electron populations 1.20811 0.89391 1.03477 1.03028 1.20268 0.97501 0.92970 0.99498 1.21254 0.93764 0.98633 1.00998 1.21240 0.94936 0.97865 1.00674 1.19938 0.95259 0.93828 1.00229 1.20859 0.90551 1.03857 0.96475 1.23038 0.88827 1.01228 0.96746 1.62157 1.04729 1.33498 1.26049 1.20146 0.93721 0.95361 0.85937 1.21474 0.96956 1.44036 0.92969 0.92746 1.25790 1.02690 0.96063 0.94972 1.70068 1.38382 1.50390 0.98637 0.85574 0.79892 0.78932 0.77032 1.19797 1.20959 1.19351 1.22162 0.97887 0.86822 0.98723 1.21106 0.97224 0.96471 0.94724 1.23395 0.96882 1.04443 0.99906 1.21772 0.98815 0.96292 1.02007 1.22563 1.00978 1.01043 0.96670 1.21462 0.94850 0.97949 1.00336 1.21325 0.93975 0.98482 1.00596 0.90280 0.90648 0.91072 0.84781 0.86463 0.88501 0.91881 0.94570 0.89759 0.99901 0.95509 0.92967 0.90970 0.93055 0.91369 0.92147 0.87448 0.94304 0.91799 0.91422 0.92242 0.92258 0.93869 0.84408 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.23 0.71 -0.77 16 2 C -0.10 -2.04 5.88 -19.87 -0.12 -2.16 16 3 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 4 C -0.13 -3.37 9.70 22.27 0.22 -3.16 16 5 C -0.09 -2.45 5.06 -19.86 -0.10 -2.55 16 6 C -0.08 -2.36 4.50 29.85 0.13 -2.23 16 7 C 0.03 1.04 3.73 86.30 0.32 1.36 16 8 N -0.54 -23.38 4.65 -900.79 -4.19 -27.56 16 9 C 0.17 9.26 4.15 85.56 0.36 9.61 16 10 C -0.52 -29.72 8.26 25.60 0.21 -29.51 16 11 H 0.05 3.12 7.60 -2.91 -0.02 3.10 16 12 C 0.00 0.13 5.46 84.65 0.46 0.60 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 14 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.07 2.72 4.58 86.30 0.40 3.12 16 19 C -0.09 -2.93 0.77 -52.18 -0.04 -2.97 16 20 C -0.19 -4.73 4.84 71.98 0.35 -4.39 16 21 C -0.13 -3.58 8.40 71.98 0.60 -2.97 16 22 C -0.16 -5.68 6.54 71.98 0.47 -5.21 16 23 C -0.13 -2.95 9.01 22.27 0.20 -2.75 16 24 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 27 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 28 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.10 2.58 4.38 -2.38 -0.01 2.57 16 31 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 32 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 33 H 0.09 2.91 2.31 -2.38 -0.01 2.91 16 34 H -0.02 -1.03 7.81 -2.39 -0.02 -1.04 16 35 H 0.03 1.48 3.45 -2.39 -0.01 1.48 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.07 2.42 7.47 -2.39 -0.02 2.40 16 38 H 0.05 2.23 6.74 -2.39 -0.02 2.21 16 39 H 0.07 1.49 7.32 -2.39 -0.02 1.47 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 2.81 0.86 -2.39 0.00 2.81 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 2.30 4.08 -2.39 -0.01 2.30 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.91 6.14 -2.39 -0.01 1.90 16 48 H 0.14 2.78 5.65 -2.91 -0.02 2.76 16 49 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -65.06 356.29 3.66 -61.40 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.93 Total: 24.28 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 4.61 Total: -48.94 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.90 Total: -84.09 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.06 3.66 -61.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532967400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.089 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds