Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46803 * 2 1 4 4 H 1.09003 * 109.47441 * 53.17828 * 3 2 1 5 5 C 1.50703 * 109.47120 * 173.18290 * 3 2 1 6 6 C 1.38233 * 120.00092 * 70.55325 * 5 3 2 7 7 C 1.38241 * 120.00159 * 179.78889 * 6 5 3 8 8 C 1.38233 * 119.99294 * 0.44694 * 7 6 5 9 9 C 1.38238 * 120.00675 * 359.81049 * 8 7 6 10 10 C 1.38232 * 119.99729 * 359.97438 * 9 8 7 11 11 N 1.46901 * 109.47119 * 293.17960 * 3 2 1 12 12 C 1.46901 * 111.00361 * 331.68026 * 11 3 2 13 13 C 1.53001 * 109.47409 * 172.67573 * 12 11 3 14 14 C 1.50701 * 109.46805 * 185.90533 * 13 12 11 15 15 H 1.07997 * 120.00410 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99749 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99950 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47371 * 89.99998 * 18 16 14 20 20 H 1.48502 * 109.47095 * 209.99447 * 18 16 14 21 21 H 1.48497 * 109.47294 * 329.99669 * 18 16 14 22 22 C 1.46906 * 111.00199 * 207.73150 * 11 3 2 23 23 C 1.53002 * 109.46641 * 286.00330 * 22 11 3 24 24 C 1.52998 * 109.46993 * 173.90580 * 23 22 11 25 25 C 1.53011 * 109.46980 * 293.89951 * 23 22 11 26 26 H 1.09000 * 109.46939 * 183.62732 * 1 2 3 27 27 H 1.08994 * 109.47319 * 303.62818 * 1 2 3 28 28 H 1.09002 * 109.47043 * 63.62916 * 1 2 3 29 29 H 1.08995 * 109.46673 * 240.00018 * 2 1 3 30 30 H 1.08995 * 109.46799 * 119.99608 * 2 1 3 31 31 H 1.08006 * 119.99999 * 0.02562 * 6 5 3 32 32 H 1.07989 * 119.99993 * 180.27677 * 7 6 5 33 33 H 1.08001 * 119.99383 * 179.83166 * 8 7 6 34 34 H 1.07996 * 119.99810 * 179.97438 * 9 8 7 35 35 H 1.07992 * 119.99937 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47032 * 292.68109 * 12 11 3 37 37 H 1.09003 * 109.46355 * 52.67447 * 12 11 3 38 38 H 1.08998 * 109.46854 * 305.90311 * 13 12 11 39 39 H 1.08994 * 109.47051 * 65.90848 * 13 12 11 40 40 H 0.96999 * 119.99879 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47222 * 45.99490 * 22 11 3 42 42 H 1.09000 * 109.47499 * 166.00225 * 22 11 3 43 43 H 1.08997 * 109.47541 * 53.90472 * 23 22 11 44 44 H 1.09004 * 109.47467 * 59.99567 * 24 23 22 45 45 H 1.09005 * 109.47357 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47180 * 299.99386 * 24 23 22 47 47 H 1.08999 * 109.46499 * 65.01880 * 25 23 22 48 48 H 1.09000 * 109.47264 * 185.01208 * 25 23 22 49 49 H 1.08997 * 109.47040 * 305.01376 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5804 1.9904 0.8227 5 6 3.5375 1.4459 0.1687 6 6 4.3498 1.0046 -0.8591 7 6 5.7237 1.0118 -0.7060 8 6 6.2848 1.4517 0.4783 9 6 5.4723 1.8881 1.5080 10 6 4.0986 1.8850 1.3533 11 7 1.6892 2.0858 -1.2732 12 6 1.5986 1.0968 -2.3556 13 6 1.0566 1.7702 -3.6179 14 6 0.8269 0.7294 -4.6833 15 1 1.0452 -0.3086 -4.4802 16 6 0.3369 1.1023 -5.9170 17 7 0.1369 0.1941 -6.8469 18 14 -0.0414 2.8975 -6.2680 19 1 1.1665 3.5584 -6.8246 20 1 -1.1513 2.9866 -7.2505 21 1 -0.4400 3.5749 -5.0081 22 6 2.6482 3.1469 -1.6087 23 6 2.4012 4.3603 -0.7100 24 6 3.4922 5.4051 -0.9527 25 6 1.0340 4.9657 -1.0348 26 1 -0.3633 -1.0256 0.0650 27 1 -0.3633 0.5691 0.8556 28 1 -0.3633 0.4565 -0.9207 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9113 0.6577 -1.7831 32 1 6.3584 0.6712 -1.5106 33 1 7.3580 1.4549 0.5989 34 1 5.9107 2.2314 2.4334 35 1 3.4639 2.2255 2.1579 36 1 2.5886 0.6883 -2.5582 37 1 0.9276 0.2915 -2.0565 38 1 0.1150 2.2687 -3.3879 39 1 1.7782 2.5041 -3.9766 40 1 -0.2081 0.4563 -7.7147 41 1 3.6634 2.7812 -1.4545 42 1 2.5205 3.4355 -2.6521 43 1 2.4220 4.0492 0.3344 44 1 3.4714 5.7163 -1.9972 45 1 3.3160 6.2698 -0.3128 46 1 4.4662 4.9740 -0.7213 47 1 0.2507 4.2526 -0.7778 48 1 0.8956 5.8806 -0.4587 49 1 0.9818 5.1950 -2.0991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533523076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 26.047356 kcal Electronic energy + Delta-G solvation = -24734.203593 eV Core-core repulsion = 21661.154798 eV Total energy + Delta-G solvation = -3073.048795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41495 -37.64543 -35.22000 -33.45063 -31.99720 -31.24993 -30.80993 -29.44649 -26.84199 -26.17421 -25.55931 -23.06687 -22.67324 -21.93076 -20.52273 -20.23097 -18.74121 -16.85002 -16.74605 -15.77739 -15.32657 -15.21083 -14.79133 -14.24848 -14.13816 -13.90179 -13.58932 -13.42230 -13.32529 -12.87588 -12.56872 -12.44803 -12.35446 -12.11578 -11.94151 -11.76978 -11.48500 -11.36186 -11.18370 -11.01104 -10.81402 -10.74756 -10.64911 -10.57882 -10.45412 -10.10559 -9.82527 -9.68105 -9.64021 -9.13092 -8.84527 -8.51077 -8.49897 -7.66337 -6.02975 -4.00537 1.40346 1.45378 3.32524 3.40452 3.46375 3.81738 4.40807 4.47650 4.80128 4.91482 5.03056 5.11730 5.14497 5.20177 5.27063 5.32308 5.36870 5.45245 5.52291 5.55887 5.69402 5.78964 5.87447 5.91265 5.95607 6.01470 6.03645 6.05999 6.08545 6.13733 6.22210 6.25483 6.34897 6.36138 6.38905 6.43060 6.51878 6.59781 6.62241 6.65368 6.72126 6.74591 6.88170 7.06349 7.23657 7.37197 7.67607 7.71671 7.88561 8.54826 9.01593 9.60229 11.10422 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.005425 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.220717 B = 5160.458467 C = 5570.828491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.121 3.879 4 H 0.083 0.917 5 C -0.092 4.092 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.115 4.115 11 N -0.521 5.521 12 C 0.050 3.950 13 C -0.007 4.007 14 C -0.518 4.518 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.262 1.262 22 C 0.037 3.963 23 C -0.085 4.085 24 C -0.145 4.145 25 C -0.136 4.136 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.027 0.973 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 5.399 17.350 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.012 3.988 4 H 0.101 0.899 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.142 4.142 10 C -0.134 4.134 11 N -0.243 5.243 12 C -0.076 4.076 13 C -0.045 4.045 14 C -0.557 4.557 15 H 0.088 0.912 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.187 1.187 22 C -0.091 4.091 23 C -0.104 4.104 24 C -0.203 4.203 25 C -0.193 4.193 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.044 0.956 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.058 0.942 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.693 5.585 17.208 19.659 hybrid contribution 0.741 0.568 -0.478 1.049 sum 8.435 6.153 16.730 19.720 Atomic orbital electron populations 1.21840 0.94786 1.01083 1.03066 1.21839 0.97000 0.95124 1.02332 1.20925 0.88162 0.95167 0.94514 0.89938 1.20615 0.97385 0.97521 0.93842 1.21451 0.93707 0.98746 0.99425 1.21144 0.95070 1.00122 0.97592 1.21076 0.99435 1.00157 0.93924 1.21056 0.93773 1.00573 0.98775 1.20993 0.94845 1.00439 0.97126 1.62508 1.47367 1.12215 1.02231 1.22624 0.99211 0.94705 0.91062 1.19599 0.96255 0.96416 0.92202 1.21078 1.43297 0.95077 0.96228 0.91177 1.24974 0.94984 0.97176 0.96102 1.69913 1.46134 1.33374 1.04921 0.86819 0.78157 0.86146 0.78488 1.20490 1.21501 1.18658 1.22630 0.94832 0.91568 1.00071 1.20992 0.95130 0.94707 0.99541 1.21802 0.98467 0.98530 1.01471 1.21710 0.97197 0.99492 1.00938 0.93280 0.93189 0.90518 0.90669 0.92285 0.85028 0.86295 0.86622 0.86601 0.86473 0.95552 0.89519 0.95643 0.97384 0.92799 0.93060 0.90347 0.91860 0.92853 0.93115 0.93224 0.91560 0.94219 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.31 37.16 0.35 -1.70 16 2 C -0.13 -1.70 4.73 -26.73 -0.13 -1.83 16 3 C 0.12 1.67 1.97 -68.86 -0.14 1.53 16 4 H 0.08 1.09 7.65 -51.93 -0.40 0.69 16 5 C -0.09 -1.22 3.23 -104.62 -0.34 -1.56 16 6 C -0.12 -1.63 6.83 -39.58 -0.27 -1.90 16 7 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 8 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 9 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 10 C -0.12 -1.36 9.67 -39.58 -0.38 -1.74 16 11 N -0.52 -8.42 4.03 -228.03 -0.92 -9.34 16 12 C 0.05 0.96 3.12 -3.82 -0.01 0.95 16 13 C -0.01 -0.17 3.80 -27.88 -0.11 -0.27 16 14 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.04 0.58 3.62 -3.82 -0.01 0.56 16 23 C -0.08 -1.16 2.90 -90.61 -0.26 -1.42 16 24 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 25 C -0.14 -1.92 9.03 37.16 0.34 -1.58 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.22 6.24 -51.93 -0.32 0.90 16 29 H 0.07 1.14 6.01 -51.93 -0.31 0.82 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.13 2.07 4.86 -52.48 -0.25 1.82 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.19 7.98 -52.49 -0.42 0.78 16 36 H 0.03 0.51 5.07 -51.93 -0.26 0.25 16 37 H 0.09 1.67 4.10 -51.93 -0.21 1.46 16 38 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 39 H 0.01 0.19 5.86 -51.93 -0.30 -0.11 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.05 0.81 4.22 -51.93 -0.22 0.59 16 42 H 0.08 1.42 5.86 -51.93 -0.30 1.11 16 43 H 0.06 0.84 7.19 -51.93 -0.37 0.47 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -29.47 364.62 -9.97 -39.44 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.41 Total: 3.11 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.25 Total: -28.87 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.14 Total: -36.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.47 -9.97 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533523076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.490 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds