Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46803 * 2 1 4 4 H 1.09003 * 109.47441 * 53.17828 * 3 2 1 5 5 C 1.50703 * 109.47120 * 173.18290 * 3 2 1 6 6 C 1.38233 * 120.00092 * 70.55325 * 5 3 2 7 7 C 1.38241 * 120.00159 * 179.78889 * 6 5 3 8 8 C 1.38233 * 119.99294 * 0.44694 * 7 6 5 9 9 C 1.38238 * 120.00675 * 359.81049 * 8 7 6 10 10 C 1.38232 * 119.99729 * 359.97438 * 9 8 7 11 11 N 1.46901 * 109.47119 * 293.17960 * 3 2 1 12 12 C 1.46901 * 111.00361 * 331.68026 * 11 3 2 13 13 C 1.53001 * 109.47409 * 172.67573 * 12 11 3 14 14 C 1.50701 * 109.46805 * 185.90533 * 13 12 11 15 15 H 1.07997 * 120.00410 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99749 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99950 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47371 * 89.99998 * 18 16 14 20 20 H 1.48502 * 109.47095 * 209.99447 * 18 16 14 21 21 H 1.48497 * 109.47294 * 329.99669 * 18 16 14 22 22 C 1.46906 * 111.00199 * 207.73150 * 11 3 2 23 23 C 1.53002 * 109.46641 * 286.00330 * 22 11 3 24 24 C 1.52998 * 109.46993 * 173.90580 * 23 22 11 25 25 C 1.53011 * 109.46980 * 293.89951 * 23 22 11 26 26 H 1.09000 * 109.46939 * 183.62732 * 1 2 3 27 27 H 1.08994 * 109.47319 * 303.62818 * 1 2 3 28 28 H 1.09002 * 109.47043 * 63.62916 * 1 2 3 29 29 H 1.08995 * 109.46673 * 240.00018 * 2 1 3 30 30 H 1.08995 * 109.46799 * 119.99608 * 2 1 3 31 31 H 1.08006 * 119.99999 * 0.02562 * 6 5 3 32 32 H 1.07989 * 119.99993 * 180.27677 * 7 6 5 33 33 H 1.08001 * 119.99383 * 179.83166 * 8 7 6 34 34 H 1.07996 * 119.99810 * 179.97438 * 9 8 7 35 35 H 1.07992 * 119.99937 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47032 * 292.68109 * 12 11 3 37 37 H 1.09003 * 109.46355 * 52.67447 * 12 11 3 38 38 H 1.08998 * 109.46854 * 305.90311 * 13 12 11 39 39 H 1.08994 * 109.47051 * 65.90848 * 13 12 11 40 40 H 0.96999 * 119.99879 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47222 * 45.99490 * 22 11 3 42 42 H 1.09000 * 109.47499 * 166.00225 * 22 11 3 43 43 H 1.08997 * 109.47541 * 53.90472 * 23 22 11 44 44 H 1.09004 * 109.47467 * 59.99567 * 24 23 22 45 45 H 1.09005 * 109.47357 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47180 * 299.99386 * 24 23 22 47 47 H 1.08999 * 109.46499 * 65.01880 * 25 23 22 48 48 H 1.09000 * 109.47264 * 185.01208 * 25 23 22 49 49 H 1.08997 * 109.47040 * 305.01376 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5804 1.9904 0.8227 5 6 3.5375 1.4459 0.1687 6 6 4.3498 1.0046 -0.8591 7 6 5.7237 1.0118 -0.7060 8 6 6.2848 1.4517 0.4783 9 6 5.4723 1.8881 1.5080 10 6 4.0986 1.8850 1.3533 11 7 1.6892 2.0858 -1.2732 12 6 1.5986 1.0968 -2.3556 13 6 1.0566 1.7702 -3.6179 14 6 0.8269 0.7294 -4.6833 15 1 1.0452 -0.3086 -4.4802 16 6 0.3369 1.1023 -5.9170 17 7 0.1369 0.1941 -6.8469 18 14 -0.0414 2.8975 -6.2680 19 1 1.1665 3.5584 -6.8246 20 1 -1.1513 2.9866 -7.2505 21 1 -0.4400 3.5749 -5.0081 22 6 2.6482 3.1469 -1.6087 23 6 2.4012 4.3603 -0.7100 24 6 3.4922 5.4051 -0.9527 25 6 1.0340 4.9657 -1.0348 26 1 -0.3633 -1.0256 0.0650 27 1 -0.3633 0.5691 0.8556 28 1 -0.3633 0.4565 -0.9207 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9113 0.6577 -1.7831 32 1 6.3584 0.6712 -1.5106 33 1 7.3580 1.4549 0.5989 34 1 5.9107 2.2314 2.4334 35 1 3.4639 2.2255 2.1579 36 1 2.5886 0.6883 -2.5582 37 1 0.9276 0.2915 -2.0565 38 1 0.1150 2.2687 -3.3879 39 1 1.7782 2.5041 -3.9766 40 1 -0.2081 0.4563 -7.7147 41 1 3.6634 2.7812 -1.4545 42 1 2.5205 3.4355 -2.6521 43 1 2.4220 4.0492 0.3344 44 1 3.4714 5.7163 -1.9972 45 1 3.3160 6.2698 -0.3128 46 1 4.4662 4.9740 -0.7213 47 1 0.2507 4.2526 -0.7778 48 1 0.8956 5.8806 -0.4587 49 1 0.9818 5.1950 -2.0991 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533523076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 11.120546 kcal Electronic energy + Delta-G solvation = -24734.850868 eV Core-core repulsion = 21661.154798 eV Total energy + Delta-G solvation = -3073.696070 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52711 -38.73507 -36.34553 -35.37881 -33.60800 -32.42137 -31.78414 -30.96471 -27.89616 -27.35157 -27.16308 -24.51411 -23.79361 -22.95592 -22.02379 -21.41801 -19.95773 -18.95227 -17.80355 -17.12212 -16.45337 -16.26126 -16.08987 -15.95845 -15.39562 -15.22045 -14.74181 -14.65510 -14.46535 -14.35082 -14.18087 -13.65748 -13.48415 -13.30821 -13.22725 -12.96352 -12.90951 -12.70122 -12.49115 -12.23287 -12.09283 -11.90722 -11.82067 -11.76328 -11.71936 -11.65498 -11.55859 -11.38733 -11.16423 -11.05039 -10.73039 -9.78874 -9.47645 -8.97578 -8.30181 -6.32780 0.46623 0.52386 1.32288 1.34754 1.47777 2.34705 2.85487 3.05747 3.16411 3.78052 3.88801 4.02300 4.05282 4.13257 4.20246 4.25224 4.29433 4.35450 4.47570 4.54048 4.57873 4.68061 4.72372 4.76265 4.82636 4.84857 4.87952 4.92673 5.04658 5.05641 5.08758 5.11876 5.17283 5.18060 5.19982 5.29306 5.32954 5.33137 5.46524 5.55300 5.58034 5.59092 5.62730 5.66842 5.67284 5.75510 6.15019 6.21689 6.34354 6.40328 6.74994 7.31734 8.86549 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.005425 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.220717 B = 5160.458467 C = 5570.828491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.124 3.876 4 H 0.099 0.901 5 C -0.100 4.100 6 C -0.137 4.137 7 C -0.133 4.133 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.115 4.115 11 N -0.520 5.520 12 C 0.065 3.935 13 C 0.003 3.997 14 C -0.525 4.525 15 H 0.033 0.967 16 C 0.011 3.989 17 N -0.950 5.950 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.249 1.249 22 C 0.038 3.962 23 C -0.078 4.078 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.019 0.981 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 7.683 20.384 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.016 3.984 4 H 0.117 0.883 5 C -0.102 4.102 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.134 4.134 11 N -0.243 5.243 12 C -0.062 4.062 13 C -0.035 4.035 14 C -0.564 4.564 15 H 0.052 0.948 16 C -0.186 4.186 17 N -0.590 5.590 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.173 1.173 22 C -0.089 4.089 23 C -0.097 4.097 24 C -0.198 4.198 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.696 7.871 20.262 23.412 hybrid contribution 0.502 -0.249 -1.371 1.482 sum 9.198 7.621 18.891 22.350 Atomic orbital electron populations 1.21779 0.94749 1.01523 1.02260 1.21795 0.96941 0.95190 1.02045 1.20959 0.89125 0.95060 0.93224 0.88274 1.20504 0.96588 0.98574 0.94519 1.21305 0.94729 1.00465 0.98975 1.21297 0.94512 1.00566 0.98756 1.21391 1.00903 0.99002 0.93144 1.21432 0.93394 0.99225 0.99634 1.21243 0.95722 0.99658 0.96732 1.62463 1.48068 1.11587 1.02134 1.22288 0.98425 0.94856 0.90586 1.19441 0.95985 0.95172 0.92890 1.21396 1.42687 0.94588 0.97713 0.94845 1.25875 0.94891 1.01994 0.95878 1.70055 1.47557 1.35829 1.05601 0.85753 0.78338 0.80350 0.78827 1.19504 1.20833 1.17309 1.22624 0.94916 0.92354 0.99027 1.20952 0.95431 0.93896 0.99384 1.21762 0.97921 0.98685 1.01440 1.21678 0.97034 1.00205 1.00135 0.92666 0.91335 0.93423 0.93065 0.90412 0.87878 0.85904 0.84174 0.83589 0.84321 0.96304 0.89997 0.96271 0.97423 0.92546 0.92847 0.93255 0.90686 0.93675 0.91156 0.93022 0.92789 0.91978 0.94923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.31 71.98 0.67 -3.23 16 2 C -0.12 -3.27 4.73 30.60 0.14 -3.12 16 3 C 0.12 3.28 1.97 44.17 0.09 3.37 16 4 H 0.10 2.33 7.65 -2.39 -0.02 2.32 16 5 C -0.10 -2.51 3.23 -19.86 -0.06 -2.57 16 6 C -0.14 -3.86 6.83 22.27 0.15 -3.71 16 7 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 8 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 9 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 10 C -0.12 -2.31 9.67 22.27 0.22 -2.09 16 11 N -0.52 -16.86 4.03 -875.35 -3.52 -20.38 16 12 C 0.07 2.63 3.12 86.30 0.27 2.90 16 13 C 0.00 0.14 3.80 29.85 0.11 0.25 16 14 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 15 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 16 C 0.01 0.63 5.47 84.65 0.46 1.09 16 17 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 18 Si 0.94 45.86 27.47 68.60 1.88 47.74 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.25 -11.52 6.54 99.48 0.65 -10.86 16 22 C 0.04 1.20 3.62 86.30 0.31 1.51 16 23 C -0.08 -1.96 2.90 -10.79 -0.03 -2.00 16 24 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 25 C -0.13 -3.51 9.03 71.99 0.65 -2.86 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.55 6.24 -2.39 -0.01 1.53 16 29 H 0.05 1.61 6.01 -2.39 -0.01 1.60 16 30 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.10 3.47 4.86 -2.91 -0.01 3.46 16 32 H 0.12 2.75 8.06 -2.92 -0.02 2.73 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.14 2.17 7.98 -2.91 -0.02 2.15 16 36 H 0.02 0.79 5.07 -2.39 -0.01 0.78 16 37 H 0.08 3.36 4.10 -2.39 -0.01 3.35 16 38 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 39 H 0.01 0.37 5.86 -2.39 -0.01 0.36 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.05 1.67 4.22 -2.39 -0.01 1.66 16 42 H 0.05 1.82 5.86 -2.39 -0.01 1.80 16 43 H 0.07 1.75 7.19 -2.39 -0.02 1.73 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -65.95 364.62 4.07 -61.88 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.85 Total: 21.59 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 4.56 Total: -50.68 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.22 Total: -80.53 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -65.95 4.07 -61.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533523076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.998 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds