Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 H 1.08994 * 109.47141 * 298.75882 * 3 2 1 5 5 C 1.50699 * 109.46906 * 178.75407 * 3 2 1 6 6 C 1.38228 * 120.00228 * 301.97431 * 5 3 2 7 7 C 1.38234 * 119.99762 * 179.78868 * 6 5 3 8 8 C 1.38242 * 120.00174 * 0.44025 * 7 6 5 9 9 C 1.38231 * 119.99582 * 359.81202 * 8 7 6 10 10 C 1.38228 * 120.00296 * 359.97438 * 9 8 7 11 11 N 1.46905 * 109.46903 * 58.76018 * 3 2 1 12 12 C 1.46892 * 111.00047 * 36.31608 * 11 3 2 13 13 C 1.53005 * 109.47171 * 200.84042 * 12 11 3 14 14 C 1.50700 * 109.47040 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99755 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00269 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00086 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46881 * 89.99721 * 18 16 14 20 20 H 1.48496 * 109.47331 * 210.00063 * 18 16 14 21 21 H 1.48500 * 109.46862 * 330.00073 * 18 16 14 22 22 C 1.46897 * 110.99993 * 160.27598 * 11 3 2 23 23 C 1.53002 * 109.47458 * 70.42601 * 22 11 3 24 24 C 1.53000 * 109.46803 * 64.62521 * 23 22 11 25 25 C 1.52992 * 109.47176 * 184.62550 * 23 22 11 26 26 H 1.08997 * 109.46801 * 65.43839 * 1 2 3 27 27 H 1.08997 * 109.46869 * 185.43487 * 1 2 3 28 28 H 1.08999 * 109.47082 * 305.43622 * 1 2 3 29 29 H 1.08998 * 109.47027 * 239.99914 * 2 1 3 30 30 H 1.08997 * 109.46874 * 119.99928 * 2 1 3 31 31 H 1.07997 * 120.00545 * 359.97438 * 6 5 3 32 32 H 1.08007 * 120.00135 * 180.27768 * 7 6 5 33 33 H 1.07997 * 119.99809 * 179.83528 * 8 7 6 34 34 H 1.08000 * 119.99790 * 179.97438 * 9 8 7 35 35 H 1.08008 * 120.00279 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47328 * 80.84653 * 12 11 3 37 37 H 1.08995 * 109.47832 * 320.84551 * 12 11 3 38 38 H 1.08990 * 109.47049 * 300.00448 * 13 12 11 39 39 H 1.08996 * 109.46931 * 60.00563 * 13 12 11 40 40 H 0.96998 * 120.00501 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47150 * 190.42706 * 22 11 3 42 42 H 1.09008 * 109.46929 * 310.42770 * 22 11 3 43 43 H 1.08996 * 109.47016 * 304.62944 * 23 22 11 44 44 H 1.09003 * 109.47019 * 300.00002 * 24 23 22 45 45 H 1.08996 * 109.47372 * 60.00027 * 24 23 22 46 46 H 1.09000 * 109.46718 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.47569 * 60.00176 * 25 23 22 48 48 H 1.09005 * 109.47170 * 180.02562 * 25 23 22 49 49 H 1.09005 * 109.46917 * 299.99984 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6950 1.9499 -0.9008 5 6 3.5467 1.4426 0.0309 6 6 4.2169 0.8161 1.0649 7 6 5.5990 0.8125 1.0908 8 6 6.3109 1.4432 0.0875 9 6 5.6405 2.0741 -0.9437 10 6 4.2585 2.0740 -0.9720 11 7 1.5260 2.1436 1.1842 12 6 1.4692 1.2448 2.3447 13 6 0.4858 1.8037 3.3750 14 6 0.4280 0.8819 4.5658 15 1 1.0324 -0.0128 4.5860 16 6 -0.3967 1.1809 5.6296 17 7 -1.1332 2.2702 5.6048 18 14 -0.4690 0.0379 7.1054 19 1 0.5520 0.4507 8.1016 20 1 -1.8184 0.1091 7.7210 21 1 -0.1978 -1.3547 6.6667 22 6 2.3310 3.3361 1.4807 23 6 2.0809 4.3996 0.4096 24 6 0.6229 4.8585 0.4773 25 6 3.0037 5.5954 0.6530 26 1 -0.3633 0.4272 -0.9347 27 1 -0.3633 -1.0230 0.0973 28 1 -0.3633 0.5958 0.8373 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6608 0.3269 1.8509 32 1 6.1227 0.3191 1.8963 33 1 7.3906 1.4426 0.1093 34 1 6.1966 2.5672 -1.7272 35 1 3.7348 2.5674 -1.7775 36 1 2.4598 1.1670 2.7929 37 1 1.1371 0.2575 2.0238 38 1 0.8179 2.7909 3.6959 39 1 -0.5048 1.8815 2.9269 40 1 -1.7131 2.4807 6.3533 41 1 2.0499 3.7306 2.4572 42 1 3.3877 3.0686 1.4874 43 1 2.2839 3.9784 -0.5749 44 1 -0.0346 4.0065 0.3040 45 1 0.4198 5.2796 1.4619 46 1 0.4446 5.6158 -0.2860 47 1 4.0424 5.2685 0.6048 48 1 2.8252 6.3533 -0.1098 49 1 2.8006 6.0165 1.6377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533523081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = 14.956630 kcal Electronic energy + Delta-G solvation = -24619.693433 eV Core-core repulsion = 21546.163708 eV Total energy + Delta-G solvation = -3073.529725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21206 -37.58088 -35.14532 -33.37237 -31.82980 -31.13311 -30.71799 -29.11242 -26.74393 -25.99823 -25.32316 -23.08726 -22.73784 -21.84732 -20.69882 -20.05519 -18.60485 -16.70194 -16.43480 -15.70924 -15.26764 -15.10034 -14.67788 -14.44314 -14.12041 -13.85337 -13.57126 -13.31225 -13.20228 -12.51473 -12.48383 -12.30676 -12.00973 -11.96988 -11.82090 -11.64659 -11.38782 -11.24584 -11.06348 -10.90689 -10.83860 -10.61556 -10.59565 -10.52407 -10.45361 -10.33401 -9.97714 -9.52411 -9.31131 -9.04923 -8.81612 -8.54630 -8.28652 -7.56691 -5.96069 -3.98134 1.45421 1.50103 3.33083 3.39720 3.42361 3.87229 4.42791 4.58933 4.85558 4.95992 5.06570 5.19872 5.21537 5.28283 5.35080 5.39989 5.44588 5.52793 5.58760 5.64039 5.75295 5.87195 5.94915 5.97499 6.04426 6.09233 6.11354 6.12418 6.22519 6.24396 6.30294 6.34635 6.44149 6.47141 6.48189 6.54403 6.60046 6.63860 6.72475 6.80272 6.85566 6.88238 7.08684 7.11786 7.60449 7.66105 7.85372 7.98929 8.15531 8.48324 9.09755 9.65357 11.15046 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.005098 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.419271 B = 5491.009003 C = 6019.933146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.119 3.881 4 H 0.081 0.919 5 C -0.092 4.092 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.130 4.130 9 C -0.123 4.123 10 C -0.114 4.114 11 N -0.515 5.515 12 C 0.040 3.960 13 C 0.035 3.965 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.055 3.945 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.145 4.145 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.013 0.987 39 H 0.023 0.977 40 H 0.259 0.741 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 0.779 -14.188 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.010 3.990 4 H 0.099 0.901 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.133 4.133 11 N -0.237 5.237 12 C -0.086 4.086 13 C -0.003 4.003 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.073 4.073 23 C -0.105 4.105 24 C -0.194 4.194 25 C -0.203 4.203 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.969 1.027 -14.176 17.361 hybrid contribution 0.920 -0.766 1.129 1.645 sum 10.889 0.262 -13.047 16.996 Atomic orbital electron populations 1.21815 0.94579 1.01446 1.03006 1.21782 0.97254 0.95048 1.01715 1.20919 0.86904 0.95058 0.96098 0.90056 1.20700 0.97622 0.96599 0.94504 1.21359 0.94383 0.99219 0.98355 1.21147 0.94329 0.99698 0.98602 1.21067 0.99461 0.99063 0.95189 1.21060 0.94479 1.00019 0.98569 1.21029 0.93943 0.99693 0.98615 1.62494 1.49792 1.06814 1.04620 1.22805 0.99138 0.96458 0.90238 1.19014 0.94076 0.95841 0.91359 1.21197 1.24335 1.08082 1.02282 0.93020 1.24963 0.95615 0.95229 0.98335 1.69970 1.26849 1.24875 1.31425 0.86668 0.77249 0.81340 0.83163 1.20807 1.21257 1.19942 1.22273 0.95214 0.90702 0.99082 1.21026 0.95783 0.94862 0.98849 1.21702 0.96018 1.00832 1.00800 1.21803 0.99084 0.97912 1.01485 0.93458 0.93516 0.89824 0.92473 0.91058 0.85387 0.86419 0.86672 0.86627 0.86498 0.95949 0.90374 0.96875 0.95877 0.93099 0.90409 0.94593 0.92015 0.91289 0.92937 0.94384 0.93331 0.93147 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.25 37.16 0.34 -1.88 16 2 C -0.12 -1.70 4.68 -26.73 -0.13 -1.82 16 3 C 0.12 1.71 1.95 -68.86 -0.13 1.58 16 4 H 0.08 1.13 7.21 -51.93 -0.37 0.75 16 5 C -0.09 -1.27 2.91 -104.62 -0.30 -1.58 16 6 C -0.11 -1.66 7.49 -39.59 -0.30 -1.95 16 7 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 8 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 9 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 10 C -0.11 -1.40 9.13 -39.58 -0.36 -1.77 16 11 N -0.51 -8.73 3.43 -228.04 -0.78 -9.51 16 12 C 0.04 0.80 2.61 -3.83 -0.01 0.79 16 13 C 0.03 0.88 5.10 -27.88 -0.14 0.73 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 15 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.06 0.92 3.74 -3.82 -0.01 0.90 16 23 C -0.09 -1.22 2.91 -90.62 -0.26 -1.48 16 24 C -0.14 -2.02 9.08 37.16 0.34 -1.68 16 25 C -0.14 -1.84 9.19 37.15 0.34 -1.50 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.48 6.22 -51.93 -0.32 1.15 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.08 5.28 -51.93 -0.27 0.80 16 31 H 0.13 2.00 5.02 -52.49 -0.26 1.73 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.27 7.82 -52.48 -0.41 0.86 16 36 H 0.02 0.46 5.83 -51.93 -0.30 0.15 16 37 H 0.08 1.53 4.02 -51.93 -0.21 1.32 16 38 H 0.01 0.36 6.82 -51.93 -0.35 0.00 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 1.51 6.63 -51.93 -0.34 1.16 16 42 H 0.04 0.60 5.55 -51.92 -0.29 0.32 16 43 H 0.06 0.83 6.30 -51.93 -0.33 0.51 16 44 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -28.91 368.28 -10.24 -39.15 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.49 Total: 2.67 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.23 Total: -28.47 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.05 Total: -35.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.91 -10.24 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533523081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.109 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds