Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47054 * 2 1 4 4 H 1.08994 * 109.47141 * 298.75882 * 3 2 1 5 5 C 1.50699 * 109.46906 * 178.75407 * 3 2 1 6 6 C 1.38228 * 120.00228 * 301.97431 * 5 3 2 7 7 C 1.38234 * 119.99762 * 179.78868 * 6 5 3 8 8 C 1.38242 * 120.00174 * 0.44025 * 7 6 5 9 9 C 1.38231 * 119.99582 * 359.81202 * 8 7 6 10 10 C 1.38228 * 120.00296 * 359.97438 * 9 8 7 11 11 N 1.46905 * 109.46903 * 58.76018 * 3 2 1 12 12 C 1.46892 * 111.00047 * 36.31608 * 11 3 2 13 13 C 1.53005 * 109.47171 * 200.84042 * 12 11 3 14 14 C 1.50700 * 109.47040 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99755 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00269 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00086 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46881 * 89.99721 * 18 16 14 20 20 H 1.48496 * 109.47331 * 210.00063 * 18 16 14 21 21 H 1.48500 * 109.46862 * 330.00073 * 18 16 14 22 22 C 1.46897 * 110.99993 * 160.27598 * 11 3 2 23 23 C 1.53002 * 109.47458 * 70.42601 * 22 11 3 24 24 C 1.53000 * 109.46803 * 64.62521 * 23 22 11 25 25 C 1.52992 * 109.47176 * 184.62550 * 23 22 11 26 26 H 1.08997 * 109.46801 * 65.43839 * 1 2 3 27 27 H 1.08997 * 109.46869 * 185.43487 * 1 2 3 28 28 H 1.08999 * 109.47082 * 305.43622 * 1 2 3 29 29 H 1.08998 * 109.47027 * 239.99914 * 2 1 3 30 30 H 1.08997 * 109.46874 * 119.99928 * 2 1 3 31 31 H 1.07997 * 120.00545 * 359.97438 * 6 5 3 32 32 H 1.08007 * 120.00135 * 180.27768 * 7 6 5 33 33 H 1.07997 * 119.99809 * 179.83528 * 8 7 6 34 34 H 1.08000 * 119.99790 * 179.97438 * 9 8 7 35 35 H 1.08008 * 120.00279 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47328 * 80.84653 * 12 11 3 37 37 H 1.08995 * 109.47832 * 320.84551 * 12 11 3 38 38 H 1.08990 * 109.47049 * 300.00448 * 13 12 11 39 39 H 1.08996 * 109.46931 * 60.00563 * 13 12 11 40 40 H 0.96998 * 120.00501 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47150 * 190.42706 * 22 11 3 42 42 H 1.09008 * 109.46929 * 310.42770 * 22 11 3 43 43 H 1.08996 * 109.47016 * 304.62944 * 23 22 11 44 44 H 1.09003 * 109.47019 * 300.00002 * 24 23 22 45 45 H 1.08996 * 109.47372 * 60.00027 * 24 23 22 46 46 H 1.09000 * 109.46718 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.47569 * 60.00176 * 25 23 22 48 48 H 1.09005 * 109.47170 * 180.02562 * 25 23 22 49 49 H 1.09005 * 109.46917 * 299.99984 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6950 1.9499 -0.9008 5 6 3.5467 1.4426 0.0309 6 6 4.2169 0.8161 1.0649 7 6 5.5990 0.8125 1.0908 8 6 6.3109 1.4432 0.0875 9 6 5.6405 2.0741 -0.9437 10 6 4.2585 2.0740 -0.9720 11 7 1.5260 2.1436 1.1842 12 6 1.4692 1.2448 2.3447 13 6 0.4858 1.8037 3.3750 14 6 0.4280 0.8819 4.5658 15 1 1.0324 -0.0128 4.5860 16 6 -0.3967 1.1809 5.6296 17 7 -1.1332 2.2702 5.6048 18 14 -0.4690 0.0379 7.1054 19 1 0.5520 0.4507 8.1016 20 1 -1.8184 0.1091 7.7210 21 1 -0.1978 -1.3547 6.6667 22 6 2.3310 3.3361 1.4807 23 6 2.0809 4.3996 0.4096 24 6 0.6229 4.8585 0.4773 25 6 3.0037 5.5954 0.6530 26 1 -0.3633 0.4272 -0.9347 27 1 -0.3633 -1.0230 0.0973 28 1 -0.3633 0.5958 0.8373 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6608 0.3269 1.8509 32 1 6.1227 0.3191 1.8963 33 1 7.3906 1.4426 0.1093 34 1 6.1966 2.5672 -1.7272 35 1 3.7348 2.5674 -1.7775 36 1 2.4598 1.1670 2.7929 37 1 1.1371 0.2575 2.0238 38 1 0.8179 2.7909 3.6959 39 1 -0.5048 1.8815 2.9269 40 1 -1.7131 2.4807 6.3533 41 1 2.0499 3.7306 2.4572 42 1 3.3877 3.0686 1.4874 43 1 2.2839 3.9784 -0.5749 44 1 -0.0346 4.0065 0.3040 45 1 0.4198 5.2796 1.4619 46 1 0.4446 5.6158 -0.2860 47 1 4.0424 5.2685 0.6048 48 1 2.8252 6.3533 -0.1098 49 1 2.8006 6.0165 1.6377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533523081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = 1.385467 kcal Electronic energy + Delta-G solvation = -24620.281923 eV Core-core repulsion = 21546.163708 eV Total energy + Delta-G solvation = -3074.118215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37324 -38.72362 -36.36441 -35.36371 -33.38810 -32.29312 -31.71148 -30.75597 -27.89740 -27.23646 -27.06912 -24.67428 -23.89051 -22.88737 -22.17898 -21.35765 -19.86643 -18.52746 -17.75291 -17.10868 -16.49021 -16.38069 -16.25782 -15.80300 -15.42317 -15.09485 -14.74138 -14.37248 -14.32615 -14.20057 -14.05302 -13.56512 -13.41615 -13.23653 -13.13194 -12.94692 -12.86276 -12.66858 -12.55033 -12.44501 -12.24263 -12.02460 -11.82998 -11.74472 -11.73827 -11.66419 -11.39603 -11.28672 -11.14750 -10.92911 -10.49368 -9.77553 -9.55129 -8.97153 -8.17426 -6.28140 0.48565 0.54273 1.38812 1.39977 1.50920 2.40535 2.88028 3.15824 3.22707 3.79506 3.88837 4.03209 4.12098 4.17394 4.20096 4.28686 4.30685 4.35359 4.47763 4.59303 4.63048 4.70330 4.75478 4.77983 4.79405 4.87987 4.90585 4.93314 5.04211 5.10167 5.13127 5.17068 5.18148 5.20760 5.23797 5.30557 5.35428 5.46855 5.52365 5.59805 5.61528 5.63377 5.66264 5.73173 5.79746 5.87226 6.16374 6.19467 6.42978 6.44985 6.90068 7.40634 8.94429 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.005098 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.419271 B = 5491.009003 C = 6019.933146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.122 3.878 4 H 0.096 0.904 5 C -0.103 4.103 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.115 4.115 11 N -0.520 5.520 12 C 0.064 3.936 13 C 0.047 3.953 14 C -0.540 4.540 15 H 0.056 0.944 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.062 3.938 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.140 4.140 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.015 0.985 37 H 0.083 0.917 38 H -0.020 1.020 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.521 0.417 -16.188 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.114 0.886 5 C -0.105 4.105 6 C -0.154 4.154 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.138 4.138 10 C -0.134 4.134 11 N -0.242 5.242 12 C -0.063 4.063 13 C 0.010 3.990 14 C -0.578 4.578 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.065 4.065 23 C -0.097 4.097 24 C -0.189 4.189 25 C -0.198 4.198 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.033 0.967 37 H 0.101 0.899 38 H -0.001 1.001 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.884 0.660 -16.190 20.094 hybrid contribution 0.357 -0.630 1.702 1.850 sum 12.241 0.031 -14.487 18.967 Atomic orbital electron populations 1.21741 0.95120 1.01288 1.02248 1.21746 0.96628 0.95006 1.02044 1.20941 0.87885 0.94984 0.94761 0.88625 1.20568 0.96845 0.97757 0.95289 1.21283 0.95251 1.00424 0.98491 1.21333 0.93804 1.00190 0.99584 1.21405 1.00832 0.97942 0.94454 1.21430 0.94245 0.99172 0.98914 1.21256 0.94620 0.99132 0.98391 1.62390 1.50854 1.06688 1.04280 1.22366 0.96946 0.96813 0.90217 1.18804 0.93700 0.94218 0.92325 1.21617 1.24403 1.08524 1.03284 0.92538 1.25896 0.95075 0.96830 1.01592 1.70117 1.27628 1.26788 1.32535 0.85527 0.77447 0.79471 0.79085 1.20003 1.20733 1.18688 1.22188 0.94964 0.91185 0.98212 1.20989 0.95594 0.94652 0.98472 1.21651 0.96300 1.00707 1.00277 1.21762 0.98915 0.97564 1.01549 0.91816 0.92818 0.93460 0.90154 0.92610 0.87703 0.85628 0.84127 0.83653 0.84615 0.96651 0.89860 1.00121 0.99028 0.92932 0.94410 0.94478 0.90234 0.93081 0.95291 0.91753 0.92658 0.90920 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.25 71.98 0.67 -3.63 16 2 C -0.12 -3.23 4.68 30.60 0.14 -3.08 16 3 C 0.12 3.44 1.95 44.17 0.09 3.52 16 4 H 0.10 2.44 7.21 -2.39 -0.02 2.43 16 5 C -0.10 -2.70 2.91 -19.87 -0.06 -2.76 16 6 C -0.14 -3.90 7.49 22.27 0.17 -3.73 16 7 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 8 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 9 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 10 C -0.12 -2.48 9.13 22.27 0.20 -2.27 16 11 N -0.52 -18.31 3.43 -875.37 -3.01 -21.32 16 12 C 0.06 2.70 2.61 86.31 0.23 2.92 16 13 C 0.05 2.56 5.10 29.85 0.15 2.71 16 14 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 18 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.06 2.15 3.74 86.30 0.32 2.47 16 23 C -0.08 -2.15 2.91 -10.80 -0.03 -2.18 16 24 C -0.13 -3.93 9.08 71.98 0.65 -3.28 16 25 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.73 6.22 -2.39 -0.01 1.72 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.72 5.28 -2.39 -0.01 1.70 16 31 H 0.10 3.43 5.02 -2.91 -0.01 3.41 16 32 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.14 2.37 7.82 -2.91 -0.02 2.35 16 36 H 0.02 0.67 5.83 -2.38 -0.01 0.66 16 37 H 0.08 3.43 4.02 -2.39 -0.01 3.42 16 38 H -0.02 -1.18 6.82 -2.39 -0.02 -1.19 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.04 1.58 6.63 -2.39 -0.02 1.57 16 42 H 0.04 1.27 5.55 -2.38 -0.01 1.25 16 43 H 0.08 1.93 6.30 -2.39 -0.02 1.92 16 44 H 0.05 1.68 7.74 -2.39 -0.02 1.67 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -65.61 368.28 4.76 -60.85 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.90 Total: 20.70 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 4.56 Total: -49.74 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.72 Total: -78.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.61 4.76 -60.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533523081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.231 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds