Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47509 * 2 1 4 4 C 1.46895 * 111.00335 * 164.15699 * 3 2 1 5 5 C 1.50698 * 109.47094 * 287.46610 * 4 3 2 6 6 C 1.38236 * 120.00129 * 89.99799 * 5 4 3 7 7 C 1.38238 * 120.00064 * 179.72465 * 6 5 4 8 8 C 1.38233 * 120.00047 * 0.26236 * 7 6 5 9 9 C 1.50695 * 120.00047 * 180.02562 * 8 7 6 10 10 C 1.38243 * 119.99958 * 0.02562 * 8 7 6 11 11 C 1.38235 * 119.99982 * 270.23793 * 5 4 3 12 12 C 1.46908 * 110.99617 * 288.11092 * 3 2 1 13 13 C 1.52992 * 109.46981 * 150.80366 * 12 3 2 14 14 C 1.53001 * 109.47415 * 301.53230 * 13 12 3 15 15 C 1.53001 * 109.47648 * 61.53498 * 13 12 3 16 16 C 1.53006 * 109.47197 * 181.53497 * 13 12 3 17 17 C 1.50698 * 109.47211 * 179.97438 * 16 13 12 18 18 H 1.07996 * 119.99956 * 0.02562 * 17 16 13 19 19 C 1.37877 * 119.99822 * 180.02562 * 17 16 13 20 20 N 1.31522 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46847 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46880 * 119.99815 * 21 19 17 24 24 H 1.48495 * 109.46899 * 239.99896 * 21 19 17 25 25 H 1.09005 * 109.46826 * 65.81608 * 1 2 3 26 26 H 1.08998 * 109.47490 * 185.81537 * 1 2 3 27 27 H 1.08998 * 109.47127 * 305.81998 * 1 2 3 28 28 H 1.08996 * 109.47262 * 239.99574 * 2 1 3 29 29 H 1.09003 * 109.46977 * 119.99712 * 2 1 3 30 30 H 1.09005 * 109.47303 * 167.46657 * 4 3 2 31 31 H 1.09002 * 109.47443 * 47.46702 * 4 3 2 32 32 H 1.07998 * 119.99816 * 0.02562 * 6 5 4 33 33 H 1.07995 * 119.99983 * 180.27644 * 7 6 5 34 34 H 1.08994 * 109.47557 * 89.99769 * 9 8 7 35 35 H 1.09001 * 109.46992 * 209.99547 * 9 8 7 36 36 H 1.08996 * 109.46980 * 329.99279 * 9 8 7 37 37 H 1.07998 * 119.99945 * 179.97438 * 10 8 7 38 38 H 1.08000 * 120.00089 * 0.02562 * 11 5 4 39 39 H 1.09005 * 109.46677 * 270.80363 * 12 3 2 40 40 H 1.09000 * 109.47029 * 30.79856 * 12 3 2 41 41 H 1.09008 * 109.46726 * 64.00589 * 14 13 12 42 42 H 1.08995 * 109.47480 * 184.00888 * 14 13 12 43 43 H 1.09002 * 109.47118 * 304.01448 * 14 13 12 44 44 H 1.09001 * 109.46783 * 51.41517 * 15 13 12 45 45 H 1.08990 * 109.47267 * 171.41879 * 15 13 12 46 46 H 1.08999 * 109.46809 * 291.42310 * 15 13 12 47 47 H 1.08997 * 109.47021 * 300.00190 * 16 13 12 48 48 H 1.09003 * 109.46960 * 59.99745 * 16 13 12 49 49 H 0.96996 * 119.99649 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4390 1.4415 0.3744 5 6 3.5815 1.1599 1.8479 6 6 3.7550 -0.1384 2.2899 7 6 3.8914 -0.3962 3.6412 8 6 3.8487 0.6438 4.5509 9 6 3.9979 0.3628 6.0239 10 6 3.6692 1.9414 4.1094 11 6 3.5336 2.1992 2.7581 12 6 1.7933 2.0234 -1.3036 13 6 1.6083 3.5295 -1.1085 14 6 0.4263 3.7810 -0.1701 15 6 2.8791 4.1248 -0.4989 16 6 1.3344 4.1892 -2.4616 17 6 1.1516 5.6727 -2.2694 18 1 1.2240 6.1021 -1.2811 19 6 0.8920 6.4816 -3.3553 20 7 0.8044 5.9587 -4.5589 21 14 0.6661 8.3206 -3.1172 22 1 0.8123 8.6549 -1.6778 23 1 1.6931 9.0512 -3.9024 24 1 -0.6873 8.7173 -3.5821 25 1 -0.3633 0.4210 -0.9375 26 1 -0.3634 -1.0223 0.1041 27 1 -0.3633 0.6014 0.8333 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8337 2.4335 0.1543 31 1 3.9947 0.6953 -0.1935 32 1 3.7890 -0.9508 1.5791 33 1 4.0314 -1.4099 3.9861 34 1 5.0520 0.4082 6.2976 35 1 3.4423 1.1075 6.5939 36 1 3.6073 -0.6302 6.2458 37 1 3.6354 2.7538 4.8202 38 1 3.3937 3.2130 2.4132 39 1 2.6521 1.8434 -1.9503 40 1 0.8983 1.6038 -1.7630 41 1 0.6515 3.3726 0.8152 42 1 0.2498 4.8533 -0.0874 43 1 -0.4643 3.2958 -0.5695 44 1 3.7432 3.8163 -1.0873 45 1 2.8078 5.2124 -0.5005 46 1 2.9915 3.7695 0.5254 47 1 2.1764 4.0101 -3.1302 48 1 0.4291 3.7651 -2.8960 49 1 0.6221 6.5280 -5.3228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534336808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = 9.814320 kcal Electronic energy + Delta-G solvation = -23851.663142 eV Core-core repulsion = 20777.910430 eV Total energy + Delta-G solvation = -3073.752712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.72666 -38.16805 -35.30263 -33.19636 -32.26229 -30.91438 -30.41632 -28.15631 -26.93121 -26.34214 -25.44540 -23.70324 -23.10257 -22.49680 -20.94447 -20.25539 -17.93036 -16.25497 -16.18226 -15.64405 -15.37302 -14.96434 -14.73327 -14.41086 -14.16557 -13.84129 -13.51115 -13.36878 -12.94183 -12.81124 -12.66550 -12.44032 -12.19874 -11.98698 -11.92321 -11.76075 -11.52124 -11.38986 -11.02155 -10.98557 -10.91062 -10.69604 -10.60097 -10.52225 -10.27721 -10.26484 -9.91888 -9.55573 -8.91442 -8.86607 -8.79292 -8.48168 -8.29127 -7.88588 -5.93738 -3.93289 1.35750 1.45635 3.34012 3.41933 3.45489 3.71595 4.38091 4.52675 4.77285 4.80562 4.99738 5.04201 5.14796 5.23668 5.39426 5.42312 5.42693 5.51041 5.54215 5.63598 5.68587 5.72641 5.75175 5.81291 5.96677 5.97258 6.06508 6.11310 6.14492 6.17391 6.33699 6.38840 6.43045 6.44791 6.57451 6.64813 6.74061 6.77412 6.85891 6.90623 7.05876 7.27275 7.28966 7.33828 7.47111 7.55363 7.75113 7.90261 8.07321 8.52284 9.12476 9.69310 11.18013 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.003730 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.725595 B = 7505.028419 C = 8257.233257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.069 3.931 5 C -0.067 4.067 6 C -0.114 4.114 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.094 4.094 12 C 0.063 3.937 13 C -0.050 4.050 14 C -0.114 4.114 15 C -0.135 4.135 16 C 0.033 3.967 17 C -0.503 4.503 18 H 0.060 0.940 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.034 0.966 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.011 0.989 48 H 0.013 0.987 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -13.454 16.083 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 N -0.247 5.247 4 C -0.058 4.058 5 C -0.068 4.068 6 C -0.133 4.133 7 C -0.142 4.142 8 C -0.096 4.096 9 C -0.169 4.169 10 C -0.140 4.140 11 C -0.112 4.112 12 C -0.064 4.064 13 C -0.051 4.051 14 C -0.171 4.171 15 C -0.192 4.192 16 C -0.005 4.005 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.361 -13.153 16.239 21.574 hybrid contribution 0.268 0.508 -0.768 0.959 sum 5.629 -12.646 15.470 20.759 Atomic orbital electron populations 1.21764 0.95067 1.00692 1.02747 1.22156 0.96214 0.89818 1.00030 1.62025 1.15748 1.15883 1.31018 1.21588 0.89803 1.03441 0.90932 1.19830 0.98368 0.92965 0.95639 1.21028 1.00586 0.96220 0.95461 1.20917 1.01873 0.98398 0.93034 1.19857 1.00537 0.93523 0.95674 1.20758 1.01932 1.02081 0.92103 1.21027 1.01141 0.95983 0.95806 1.21103 0.98174 0.99408 0.92555 1.22388 0.99892 0.96425 0.87662 1.20541 0.95017 0.91045 0.98487 1.21579 0.96700 1.00969 0.97838 1.22034 0.96757 1.02041 0.98329 1.19130 0.96473 0.94995 0.89890 1.21280 1.47084 0.92489 0.93327 0.92192 1.25018 0.95889 0.98338 0.95403 1.69982 1.50238 1.35072 0.98541 0.86626 0.77593 0.86181 0.78156 1.19757 1.21227 1.21204 0.92538 0.93117 0.91839 0.95566 0.91102 0.87473 0.94775 0.86643 0.86621 0.91500 0.91709 0.91851 0.86355 0.85658 0.95058 0.91392 0.93799 0.92749 0.94617 0.94444 0.91747 0.93608 0.97027 0.96836 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 37.16 0.37 -1.49 16 2 C 0.05 0.60 5.47 -3.83 -0.02 0.58 16 3 N -0.52 -7.75 3.45 -236.07 -0.81 -8.56 16 4 C 0.07 0.95 4.24 -4.98 -0.02 0.93 16 5 C -0.07 -0.87 5.10 -104.62 -0.53 -1.40 16 6 C -0.11 -1.32 8.13 -39.58 -0.32 -1.65 16 7 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 8 C -0.10 -1.02 5.88 -104.62 -0.62 -1.63 16 9 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 10 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 11 C -0.09 -1.20 9.66 -39.58 -0.38 -1.58 16 12 C 0.06 1.10 4.02 -3.82 -0.02 1.08 16 13 C -0.05 -1.00 0.60 -154.51 -0.09 -1.09 16 14 C -0.11 -2.21 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.50 6.70 37.16 0.25 -2.26 16 16 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 17 C -0.50 -13.75 7.48 -34.44 -0.26 -14.00 16 18 H 0.06 1.60 5.73 -52.49 -0.30 1.30 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 29 H 0.07 0.87 5.40 -51.93 -0.28 0.59 16 30 H 0.11 1.56 3.91 -51.93 -0.20 1.36 16 31 H 0.03 0.45 7.99 -51.93 -0.41 0.04 16 32 H 0.12 1.19 7.55 -52.49 -0.40 0.80 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.61 6.62 -52.49 -0.35 1.26 16 39 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 40 H 0.07 1.20 6.26 -51.93 -0.33 0.88 16 41 H 0.04 0.79 7.69 -51.92 -0.40 0.39 16 42 H 0.05 1.14 6.50 -51.93 -0.34 0.81 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.67 7.50 -51.93 -0.39 0.28 16 45 H 0.06 1.32 6.38 -51.93 -0.33 0.99 16 46 H 0.05 0.75 4.71 -51.93 -0.24 0.50 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -29.35 370.06 -9.99 -39.34 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.50 Total: -0.50 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -1.96 Total: -26.28 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.08 Total: -34.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.35 -9.99 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534336808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.150 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds