Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47509 * 2 1 4 4 C 1.46895 * 111.00335 * 164.15699 * 3 2 1 5 5 C 1.50698 * 109.47094 * 287.46610 * 4 3 2 6 6 C 1.38236 * 120.00129 * 89.99799 * 5 4 3 7 7 C 1.38238 * 120.00064 * 179.72465 * 6 5 4 8 8 C 1.38233 * 120.00047 * 0.26236 * 7 6 5 9 9 C 1.50695 * 120.00047 * 180.02562 * 8 7 6 10 10 C 1.38243 * 119.99958 * 0.02562 * 8 7 6 11 11 C 1.38235 * 119.99982 * 270.23793 * 5 4 3 12 12 C 1.46908 * 110.99617 * 288.11092 * 3 2 1 13 13 C 1.52992 * 109.46981 * 150.80366 * 12 3 2 14 14 C 1.53001 * 109.47415 * 301.53230 * 13 12 3 15 15 C 1.53001 * 109.47648 * 61.53498 * 13 12 3 16 16 C 1.53006 * 109.47197 * 181.53497 * 13 12 3 17 17 C 1.50698 * 109.47211 * 179.97438 * 16 13 12 18 18 H 1.07996 * 119.99956 * 0.02562 * 17 16 13 19 19 C 1.37877 * 119.99822 * 180.02562 * 17 16 13 20 20 N 1.31522 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46847 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46880 * 119.99815 * 21 19 17 24 24 H 1.48495 * 109.46899 * 239.99896 * 21 19 17 25 25 H 1.09005 * 109.46826 * 65.81608 * 1 2 3 26 26 H 1.08998 * 109.47490 * 185.81537 * 1 2 3 27 27 H 1.08998 * 109.47127 * 305.81998 * 1 2 3 28 28 H 1.08996 * 109.47262 * 239.99574 * 2 1 3 29 29 H 1.09003 * 109.46977 * 119.99712 * 2 1 3 30 30 H 1.09005 * 109.47303 * 167.46657 * 4 3 2 31 31 H 1.09002 * 109.47443 * 47.46702 * 4 3 2 32 32 H 1.07998 * 119.99816 * 0.02562 * 6 5 4 33 33 H 1.07995 * 119.99983 * 180.27644 * 7 6 5 34 34 H 1.08994 * 109.47557 * 89.99769 * 9 8 7 35 35 H 1.09001 * 109.46992 * 209.99547 * 9 8 7 36 36 H 1.08996 * 109.46980 * 329.99279 * 9 8 7 37 37 H 1.07998 * 119.99945 * 179.97438 * 10 8 7 38 38 H 1.08000 * 120.00089 * 0.02562 * 11 5 4 39 39 H 1.09005 * 109.46677 * 270.80363 * 12 3 2 40 40 H 1.09000 * 109.47029 * 30.79856 * 12 3 2 41 41 H 1.09008 * 109.46726 * 64.00589 * 14 13 12 42 42 H 1.08995 * 109.47480 * 184.00888 * 14 13 12 43 43 H 1.09002 * 109.47118 * 304.01448 * 14 13 12 44 44 H 1.09001 * 109.46783 * 51.41517 * 15 13 12 45 45 H 1.08990 * 109.47267 * 171.41879 * 15 13 12 46 46 H 1.08999 * 109.46809 * 291.42310 * 15 13 12 47 47 H 1.08997 * 109.47021 * 300.00190 * 16 13 12 48 48 H 1.09003 * 109.46960 * 59.99745 * 16 13 12 49 49 H 0.96996 * 119.99649 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4390 1.4415 0.3744 5 6 3.5815 1.1599 1.8479 6 6 3.7550 -0.1384 2.2899 7 6 3.8914 -0.3962 3.6412 8 6 3.8487 0.6438 4.5509 9 6 3.9979 0.3628 6.0239 10 6 3.6692 1.9414 4.1094 11 6 3.5336 2.1992 2.7581 12 6 1.7933 2.0234 -1.3036 13 6 1.6083 3.5295 -1.1085 14 6 0.4263 3.7810 -0.1701 15 6 2.8791 4.1248 -0.4989 16 6 1.3344 4.1892 -2.4616 17 6 1.1516 5.6727 -2.2694 18 1 1.2240 6.1021 -1.2811 19 6 0.8920 6.4816 -3.3553 20 7 0.8044 5.9587 -4.5589 21 14 0.6661 8.3206 -3.1172 22 1 0.8123 8.6549 -1.6778 23 1 1.6931 9.0512 -3.9024 24 1 -0.6873 8.7173 -3.5821 25 1 -0.3633 0.4210 -0.9375 26 1 -0.3634 -1.0223 0.1041 27 1 -0.3633 0.6014 0.8333 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8337 2.4335 0.1543 31 1 3.9947 0.6953 -0.1935 32 1 3.7890 -0.9508 1.5791 33 1 4.0314 -1.4099 3.9861 34 1 5.0520 0.4082 6.2976 35 1 3.4423 1.1075 6.5939 36 1 3.6073 -0.6302 6.2458 37 1 3.6354 2.7538 4.8202 38 1 3.3937 3.2130 2.4132 39 1 2.6521 1.8434 -1.9503 40 1 0.8983 1.6038 -1.7630 41 1 0.6515 3.3726 0.8152 42 1 0.2498 4.8533 -0.0874 43 1 -0.4643 3.2958 -0.5695 44 1 3.7432 3.8163 -1.0873 45 1 2.8078 5.2124 -0.5005 46 1 2.9915 3.7695 0.5254 47 1 2.1764 4.0101 -3.1302 48 1 0.4291 3.7651 -2.8960 49 1 0.6221 6.5280 -5.3228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534336808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -3.628072 kcal Electronic energy + Delta-G solvation = -23852.246048 eV Core-core repulsion = 20777.910430 eV Total energy + Delta-G solvation = -3074.335618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73520 -39.40348 -36.81414 -34.37769 -34.02693 -31.80339 -31.46787 -29.34757 -28.80874 -27.85961 -26.74243 -24.91309 -24.67086 -23.50617 -21.99652 -21.29628 -19.58143 -18.30847 -17.20912 -16.83048 -16.41854 -16.37363 -16.00603 -15.61536 -15.52802 -14.93891 -14.54774 -14.46139 -14.29164 -14.21554 -13.92965 -13.88327 -13.59767 -13.15735 -12.97668 -12.83305 -12.77495 -12.66789 -12.60735 -12.47838 -12.27932 -12.17696 -12.04453 -11.92216 -11.80046 -11.69254 -11.47803 -11.24220 -10.82343 -10.58603 -10.49483 -9.72167 -9.36927 -9.08644 -8.12878 -6.19248 0.48791 0.59425 1.40119 1.41281 1.53434 2.44343 2.78405 3.21076 3.27913 3.90591 3.97762 4.06493 4.15710 4.20015 4.24272 4.25106 4.33441 4.45197 4.51457 4.65578 4.67995 4.70663 4.71071 4.77899 4.87616 4.88952 4.92811 5.00272 5.02141 5.04906 5.11094 5.14738 5.24414 5.26050 5.29340 5.36393 5.40641 5.53811 5.56917 5.59333 5.63145 5.70107 5.79066 5.82343 5.90174 5.95487 6.17497 6.23324 6.30444 6.41138 6.95954 7.47763 8.99672 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.003730 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.725595 B = 7505.028419 C = 8257.233257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.072 3.928 5 C -0.082 4.082 6 C -0.119 4.119 7 C -0.127 4.127 8 C -0.098 4.098 9 C -0.111 4.111 10 C -0.131 4.131 11 C -0.110 4.110 12 C 0.075 3.925 13 C -0.046 4.046 14 C -0.101 4.101 15 C -0.125 4.125 16 C 0.041 3.959 17 C -0.510 4.510 18 H 0.065 0.935 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.954 3.046 22 H -0.261 1.261 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.024 0.976 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.071 0.929 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.136 -14.351 18.646 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 N -0.248 5.248 4 C -0.055 4.055 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.098 4.098 9 C -0.168 4.168 10 C -0.149 4.149 11 C -0.129 4.129 12 C -0.053 4.053 13 C -0.047 4.047 14 C -0.158 4.158 15 C -0.182 4.182 16 C 0.003 3.997 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.836 -14.057 18.824 24.207 hybrid contribution 0.144 0.710 -1.522 1.686 sum 5.980 -13.346 17.302 22.655 Atomic orbital electron populations 1.21740 0.94833 1.01854 1.01490 1.22217 0.96355 0.88694 1.00848 1.61971 1.16822 1.17145 1.28899 1.21525 0.88934 1.02979 0.92049 1.19750 0.99954 0.93785 0.94741 1.21191 1.00289 0.95900 0.96334 1.21232 1.01024 0.99626 0.92637 1.20231 0.99210 0.93120 0.97279 1.20809 1.02812 1.02975 0.90162 1.21247 1.01059 0.97066 0.95499 1.21154 0.99216 0.99113 0.93411 1.22091 0.99372 0.94735 0.89075 1.20401 0.95979 0.92695 0.95619 1.21445 0.96185 0.99686 0.98522 1.21940 0.95970 1.00454 0.99791 1.18999 0.93787 0.94725 0.92183 1.21638 1.46082 0.93591 0.93490 0.91662 1.25904 0.95798 1.03259 0.95136 1.70119 1.51567 1.36864 0.99450 0.85548 0.77477 0.80339 0.78634 1.18480 1.20818 1.20881 0.94076 0.90833 0.92682 0.95192 0.89665 0.88655 0.94189 0.85493 0.84349 0.90463 0.91097 0.90664 0.85033 0.86450 0.95721 0.92065 0.91922 0.94551 0.95175 0.94339 0.93847 0.91033 0.99879 0.99835 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.71 16 2 C 0.05 1.14 5.47 86.30 0.47 1.61 16 3 N -0.52 -15.08 3.45 -900.79 -3.11 -18.18 16 4 C 0.07 1.91 4.24 85.56 0.36 2.27 16 5 C -0.08 -1.98 5.10 -19.87 -0.10 -2.08 16 6 C -0.12 -2.46 8.13 22.27 0.18 -2.28 16 7 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 8 C -0.10 -1.82 5.88 -19.87 -0.12 -1.93 16 9 C -0.11 -1.38 10.01 71.23 0.71 -0.67 16 10 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 11 C -0.11 -2.68 9.66 22.27 0.22 -2.47 16 12 C 0.08 2.63 4.02 86.30 0.35 2.98 16 13 C -0.05 -1.88 0.60 -52.18 -0.03 -1.91 16 14 C -0.10 -3.95 8.05 71.98 0.58 -3.37 16 15 C -0.12 -4.66 6.70 71.98 0.48 -4.18 16 16 C 0.04 2.13 4.04 29.85 0.12 2.25 16 17 C -0.51 -28.49 7.48 25.60 0.19 -28.30 16 18 H 0.07 3.52 5.73 -2.91 -0.02 3.50 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 21 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 25 H 0.04 1.11 6.73 -2.38 -0.02 1.09 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 0.73 8.05 -2.39 -0.02 0.71 16 29 H 0.09 1.88 5.40 -2.39 -0.01 1.87 16 30 H 0.10 2.73 3.91 -2.38 -0.01 2.72 16 31 H 0.04 1.01 7.99 -2.39 -0.02 0.99 16 32 H 0.13 2.27 7.55 -2.91 -0.02 2.25 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 37 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.12 2.93 6.62 -2.91 -0.02 2.91 16 39 H 0.02 0.89 7.85 -2.38 -0.02 0.87 16 40 H 0.06 2.22 6.26 -2.39 -0.01 2.20 16 41 H 0.06 2.20 7.69 -2.38 -0.02 2.18 16 42 H 0.04 1.53 6.50 -2.39 -0.02 1.51 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.04 1.40 7.50 -2.39 -0.02 1.38 16 45 H 0.04 1.78 6.38 -2.39 -0.02 1.77 16 46 H 0.07 2.30 4.71 -2.39 -0.01 2.29 16 47 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -63.89 370.06 5.13 -58.76 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.90 Total: 15.28 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 5.02 Total: -45.24 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -2.82 Total: -75.73 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.89 5.13 -58.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534336808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.129 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds