Wall clock time and date at job start Tue Mar 31 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46740 * 2 1 4 4 N 1.46896 * 109.47247 * 239.99688 * 2 1 3 5 5 C 1.46898 * 111.00193 * 84.99900 * 4 2 1 6 6 C 1.52996 * 109.47491 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47314 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47185 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99880 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99974 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99970 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47355 * 59.99513 * 12 10 8 14 14 H 1.48504 * 109.47119 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46639 * 299.99287 * 12 10 8 16 16 C 1.50703 * 109.47031 * 119.99619 * 2 1 3 17 17 C 1.38265 * 119.99824 * 111.59298 * 16 2 1 18 18 C 1.38215 * 119.99671 * 179.74544 * 17 16 2 19 19 C 1.38252 * 119.99963 * 0.55009 * 18 17 16 20 20 C 1.38216 * 119.99979 * 359.70514 * 19 18 17 21 21 C 1.38208 * 120.00018 * 291.86798 * 16 2 1 22 22 C 1.50697 * 119.99992 * 0.02562 * 21 16 2 23 23 C 1.53009 * 109.46961 * 210.47696 * 22 21 16 24 24 C 1.52996 * 109.47440 * 330.47716 * 22 21 16 25 25 C 1.53001 * 109.47311 * 90.48162 * 22 21 16 26 26 H 1.09008 * 109.47220 * 168.31990 * 1 2 3 27 27 H 1.08998 * 109.47594 * 288.31527 * 1 2 3 28 28 H 1.08994 * 109.47286 * 48.31944 * 1 2 3 29 29 H 1.00894 * 111.00538 * 208.95682 * 4 2 1 30 30 H 1.09002 * 109.47107 * 300.00147 * 5 4 2 31 31 H 1.08996 * 109.46999 * 59.99753 * 5 4 2 32 32 H 1.09002 * 109.46737 * 299.99972 * 6 5 4 33 33 H 1.08996 * 109.47529 * 59.99675 * 6 5 4 34 34 H 1.09002 * 109.47048 * 299.99601 * 7 6 5 35 35 H 1.09008 * 109.46843 * 59.99317 * 7 6 5 36 36 H 0.97002 * 120.00399 * 180.02562 * 11 10 8 37 37 H 1.07998 * 119.99933 * 0.02562 * 17 16 2 38 38 H 1.07994 * 119.99622 * 180.27880 * 18 17 16 39 39 H 1.08000 * 119.99935 * 179.72468 * 19 18 17 40 40 H 1.08007 * 119.99751 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.46483 * 60.00225 * 23 22 21 42 42 H 1.09003 * 109.46879 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47302 * 300.00233 * 23 22 21 44 44 H 1.09003 * 109.46987 * 76.44100 * 24 22 21 45 45 H 1.08996 * 109.47531 * 196.44441 * 24 22 21 46 46 H 1.09006 * 109.46885 * 316.44899 * 24 22 21 47 47 H 1.09000 * 109.47265 * 101.30672 * 25 22 21 48 48 H 1.09004 * 109.46875 * 221.30429 * 25 22 21 49 49 H 1.08994 * 109.47165 * 341.30505 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6611 0.4198 -4.7694 8 6 3.1665 -0.3245 -5.9784 9 1 3.4162 -1.3724 -5.9019 10 6 3.3113 0.3327 -7.1818 11 7 3.0078 1.6089 -7.2747 12 14 3.9372 -0.5901 -8.6805 13 1 3.0147 -1.7111 -8.9925 14 1 4.0013 0.3352 -9.8403 15 1 5.2927 -1.1278 -8.4001 16 6 2.0323 -0.7103 1.2305 17 6 2.6782 -1.9270 1.1112 18 6 3.1436 -2.5760 2.2393 19 6 2.9531 -2.0140 3.4880 20 6 2.3028 -0.8003 3.6077 21 6 1.8423 -0.1483 2.4788 22 6 1.1324 1.1745 2.6095 23 6 1.6730 1.9252 3.8282 24 6 1.3717 2.0084 1.3493 25 6 -0.3683 0.9329 2.7838 26 1 -0.3634 -1.0065 -0.2081 27 1 -0.3634 0.3229 0.9756 28 1 -0.3633 0.6833 -0.7675 29 1 2.9173 -1.1206 -1.0287 30 1 1.0871 0.6161 -2.5525 31 1 2.7588 1.0460 -2.1182 32 1 3.5904 -0.9273 -3.3690 33 1 1.9185 -1.3567 -3.8029 34 1 1.6659 0.8142 -4.9750 35 1 3.3380 1.2430 -4.5406 36 1 3.1092 2.0712 -8.1214 37 1 2.8231 -2.3681 0.1360 38 1 3.6520 -3.5241 2.1456 39 1 3.3128 -2.5232 4.3699 40 1 2.1544 -0.3611 4.5832 41 1 2.7421 2.0974 3.7039 42 1 1.1598 2.8823 3.9224 43 1 1.5025 1.3312 4.7260 44 1 0.7460 1.6318 0.5401 45 1 1.1192 3.0497 1.5493 46 1 2.4204 1.9378 1.0606 47 1 -0.6340 1.0408 3.8354 48 1 -0.9245 1.6600 2.1921 49 1 -0.6156 -0.0742 2.4482 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534352440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:58 Heat of formation + Delta-G solvation = 54.802796 kcal Electronic energy + Delta-G solvation = -23512.992497 eV Core-core repulsion = 20441.190632 eV Total energy + Delta-G solvation = -3071.801865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00823 -37.01186 -36.56796 -34.02727 -32.28000 -30.19928 -30.02060 -29.64738 -27.90044 -27.05704 -25.86029 -23.53418 -22.79377 -22.15711 -20.46949 -19.98265 -19.38985 -17.02791 -16.27814 -15.77094 -15.38463 -15.11256 -14.68729 -14.45109 -14.33786 -14.25831 -14.00820 -13.87774 -13.31292 -12.86880 -12.48988 -12.34095 -12.27421 -12.20794 -12.04926 -11.70186 -11.69362 -11.64088 -11.36024 -11.18379 -10.95563 -10.80203 -10.72595 -10.55147 -10.51749 -10.41350 -10.06566 -9.62638 -9.29303 -9.03186 -8.83478 -8.65235 -8.31017 -7.95384 -5.96433 -3.98384 1.29915 1.35672 3.35894 3.39783 3.42717 3.69590 4.35853 4.41467 4.49948 4.55640 4.74967 4.76706 4.96560 4.99049 5.06546 5.29762 5.31570 5.36648 5.37981 5.39243 5.48679 5.53485 5.57961 5.64588 5.71150 5.80345 5.81448 5.87878 5.89023 5.95282 5.99808 6.04272 6.07607 6.09852 6.21189 6.36445 6.44461 6.46510 6.48699 6.59500 6.76984 6.85962 6.96406 7.18248 7.45200 7.69160 7.72386 7.87986 8.04254 8.47767 9.08662 9.65331 11.15021 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.003008 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.876654 B = 9306.480213 C = 9999.392734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.098 0.902 4 N -0.692 5.692 5 C 0.060 3.940 6 C -0.107 4.107 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.025 4.025 23 C -0.141 4.141 24 C -0.182 4.182 25 C -0.147 4.147 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.336 0.664 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -1.946 25.380 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 H 0.115 0.885 4 N -0.325 5.325 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.071 4.071 22 C -0.025 4.025 23 C -0.198 4.198 24 C -0.238 4.238 25 C -0.204 4.204 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.651 -2.036 25.075 25.584 hybrid contribution 1.256 -0.060 -0.673 1.426 sum -3.395 -2.096 24.402 24.726 Atomic orbital electron populations 1.22441 0.94210 1.02801 1.03084 1.21802 0.96082 0.98117 0.86802 0.88528 1.60751 1.33153 1.34229 1.04369 1.22142 1.00368 0.93674 0.90667 1.21617 0.99207 0.99467 0.94189 1.19057 0.97055 0.94210 0.91170 1.21231 1.43520 0.96358 0.94622 0.92749 1.25026 0.95665 0.94884 0.98933 1.69955 1.48932 1.08985 1.25780 0.86661 0.79430 0.79622 0.82311 1.20227 1.21320 1.20275 1.19894 0.97951 0.95271 0.94143 1.21153 0.97883 0.94769 0.99229 1.21141 1.00308 0.99997 0.92655 1.21087 1.00002 0.96059 0.97389 1.21009 0.99268 0.95440 0.98061 1.19651 0.98909 0.95981 0.92524 1.19456 0.94940 0.91877 0.96260 1.22013 1.01189 0.99803 0.96771 1.23199 1.02680 0.99493 0.98429 1.22151 0.94155 1.02399 1.01695 0.91907 0.89636 0.92472 0.84346 0.91507 0.95919 0.93783 0.92592 0.96605 0.96856 0.93007 0.84895 0.86291 0.86505 0.86138 0.92513 0.92324 0.92393 0.88068 0.92797 0.92042 0.92437 0.91728 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 7.58 37.16 0.28 -1.75 16 2 C 0.08 1.03 2.02 -68.87 -0.14 0.89 16 3 H 0.10 1.24 3.29 -60.49 -0.20 1.04 16 4 N -0.69 -10.37 5.80 -107.96 -0.63 -11.00 16 5 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 6 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 7 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 8 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 12 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 C -0.07 -0.88 5.01 -104.62 -0.52 -1.40 16 17 C -0.11 -1.35 8.97 -39.58 -0.36 -1.71 16 18 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 19 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 20 C -0.12 -1.19 9.14 -39.58 -0.36 -1.55 16 21 C -0.07 -0.75 4.34 -104.63 -0.45 -1.21 16 22 C -0.03 -0.23 0.70 -155.66 -0.11 -0.34 16 23 C -0.14 -1.09 7.47 37.16 0.28 -0.82 16 24 C -0.18 -1.80 6.27 37.16 0.23 -1.56 16 25 C -0.15 -1.21 7.59 37.16 0.28 -0.92 16 26 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 27 H 0.09 0.86 1.99 -51.93 -0.10 0.76 16 28 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 29 H 0.34 4.87 6.31 -39.29 -0.25 4.62 16 30 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 31 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.13 1.62 6.14 -52.49 -0.32 1.29 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.97 6.18 -52.48 -0.32 0.64 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.40 6.50 -51.93 -0.34 0.06 16 44 H 0.10 1.06 3.01 -51.93 -0.16 0.90 16 45 H 0.05 0.47 8.03 -51.93 -0.42 0.06 16 46 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 47 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 48 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 49 H 0.07 0.62 6.29 -51.93 -0.33 0.30 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -30.64 361.69 -9.97 -40.61 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.13 Total: 3.02 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -2.38 Total: -28.44 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.11 Total: -37.63 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.64 -9.97 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534352440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.411 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds