Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46740 * 2 1 4 4 N 1.46896 * 109.47247 * 239.99688 * 2 1 3 5 5 C 1.46898 * 111.00193 * 84.99900 * 4 2 1 6 6 C 1.52996 * 109.47491 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47314 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47185 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99880 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99974 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99970 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47355 * 59.99513 * 12 10 8 14 14 H 1.48504 * 109.47119 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46639 * 299.99287 * 12 10 8 16 16 C 1.50703 * 109.47031 * 119.99619 * 2 1 3 17 17 C 1.38265 * 119.99824 * 111.59298 * 16 2 1 18 18 C 1.38215 * 119.99671 * 179.74544 * 17 16 2 19 19 C 1.38252 * 119.99963 * 0.55009 * 18 17 16 20 20 C 1.38216 * 119.99979 * 359.70514 * 19 18 17 21 21 C 1.38208 * 120.00018 * 291.86798 * 16 2 1 22 22 C 1.50697 * 119.99992 * 0.02562 * 21 16 2 23 23 C 1.53009 * 109.46961 * 210.47696 * 22 21 16 24 24 C 1.52996 * 109.47440 * 330.47716 * 22 21 16 25 25 C 1.53001 * 109.47311 * 90.48162 * 22 21 16 26 26 H 1.09008 * 109.47220 * 168.31990 * 1 2 3 27 27 H 1.08998 * 109.47594 * 288.31527 * 1 2 3 28 28 H 1.08994 * 109.47286 * 48.31944 * 1 2 3 29 29 H 1.00894 * 111.00538 * 208.95682 * 4 2 1 30 30 H 1.09002 * 109.47107 * 300.00147 * 5 4 2 31 31 H 1.08996 * 109.46999 * 59.99753 * 5 4 2 32 32 H 1.09002 * 109.46737 * 299.99972 * 6 5 4 33 33 H 1.08996 * 109.47529 * 59.99675 * 6 5 4 34 34 H 1.09002 * 109.47048 * 299.99601 * 7 6 5 35 35 H 1.09008 * 109.46843 * 59.99317 * 7 6 5 36 36 H 0.97002 * 120.00399 * 180.02562 * 11 10 8 37 37 H 1.07998 * 119.99933 * 0.02562 * 17 16 2 38 38 H 1.07994 * 119.99622 * 180.27880 * 18 17 16 39 39 H 1.08000 * 119.99935 * 179.72468 * 19 18 17 40 40 H 1.08007 * 119.99751 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.46483 * 60.00225 * 23 22 21 42 42 H 1.09003 * 109.46879 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47302 * 300.00233 * 23 22 21 44 44 H 1.09003 * 109.46987 * 76.44100 * 24 22 21 45 45 H 1.08996 * 109.47531 * 196.44441 * 24 22 21 46 46 H 1.09006 * 109.46885 * 316.44899 * 24 22 21 47 47 H 1.09000 * 109.47265 * 101.30672 * 25 22 21 48 48 H 1.09004 * 109.46875 * 221.30429 * 25 22 21 49 49 H 1.08994 * 109.47165 * 341.30505 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5951 -0.5333 -3.5744 7 6 2.6611 0.4198 -4.7694 8 6 3.1665 -0.3245 -5.9784 9 1 3.4162 -1.3724 -5.9019 10 6 3.3113 0.3327 -7.1818 11 7 3.0078 1.6089 -7.2747 12 14 3.9372 -0.5901 -8.6805 13 1 3.0147 -1.7111 -8.9925 14 1 4.0013 0.3352 -9.8403 15 1 5.2927 -1.1278 -8.4001 16 6 2.0323 -0.7103 1.2305 17 6 2.6782 -1.9270 1.1112 18 6 3.1436 -2.5760 2.2393 19 6 2.9531 -2.0140 3.4880 20 6 2.3028 -0.8003 3.6077 21 6 1.8423 -0.1483 2.4788 22 6 1.1324 1.1745 2.6095 23 6 1.6730 1.9252 3.8282 24 6 1.3717 2.0084 1.3493 25 6 -0.3683 0.9329 2.7838 26 1 -0.3634 -1.0065 -0.2081 27 1 -0.3634 0.3229 0.9756 28 1 -0.3633 0.6833 -0.7675 29 1 2.9173 -1.1206 -1.0287 30 1 1.0871 0.6161 -2.5525 31 1 2.7588 1.0460 -2.1182 32 1 3.5904 -0.9273 -3.3690 33 1 1.9185 -1.3567 -3.8029 34 1 1.6659 0.8142 -4.9750 35 1 3.3380 1.2430 -4.5406 36 1 3.1092 2.0712 -8.1214 37 1 2.8231 -2.3681 0.1360 38 1 3.6520 -3.5241 2.1456 39 1 3.3128 -2.5232 4.3699 40 1 2.1544 -0.3611 4.5832 41 1 2.7421 2.0974 3.7039 42 1 1.1598 2.8823 3.9224 43 1 1.5025 1.3312 4.7260 44 1 0.7460 1.6318 0.5401 45 1 1.1192 3.0497 1.5493 46 1 2.4204 1.9378 1.0606 47 1 -0.6340 1.0408 3.8354 48 1 -0.9245 1.6600 2.1921 49 1 -0.6156 -0.0742 2.4482 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534352440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = 39.136909 kcal Electronic energy + Delta-G solvation = -23513.671821 eV Core-core repulsion = 20441.190632 eV Total energy + Delta-G solvation = -3072.481189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84838 -38.06627 -37.49122 -35.82268 -34.03461 -31.62224 -30.87816 -30.56424 -28.61447 -28.22354 -27.31128 -24.92097 -23.61556 -23.52314 -22.00568 -21.17512 -20.20584 -18.48773 -17.95634 -16.75879 -16.54484 -16.35285 -16.16733 -15.48546 -15.37993 -15.09399 -15.04466 -14.85085 -14.54379 -14.30562 -13.74453 -13.50327 -13.45872 -13.26587 -13.08032 -12.92125 -12.80125 -12.66542 -12.59971 -12.42735 -12.35325 -12.22353 -11.98576 -11.76438 -11.59367 -11.52466 -11.35081 -11.34140 -11.06645 -10.88256 -10.55487 -9.66706 -9.52689 -9.12027 -8.20554 -6.31784 0.48648 0.53524 1.39175 1.42670 1.50581 2.40586 2.88143 3.12268 3.21664 3.63563 3.78726 3.87882 4.05244 4.16624 4.24065 4.26078 4.31774 4.33863 4.44346 4.51958 4.58502 4.69394 4.70085 4.72741 4.79378 4.82065 4.86933 4.94067 4.98957 5.04251 5.06616 5.10176 5.13480 5.17439 5.23389 5.23806 5.32534 5.41315 5.42348 5.49590 5.51237 5.64053 5.68407 5.74388 5.78203 5.84973 6.12625 6.19188 6.28651 6.48255 6.84706 7.37293 8.91244 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.003008 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.876654 B = 9306.480213 C = 9999.392734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 H 0.099 0.901 4 N -0.692 5.692 5 C 0.074 3.926 6 C -0.092 4.092 7 C 0.027 3.973 8 C -0.545 4.545 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.966 3.034 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.090 4.090 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.075 4.075 22 C -0.025 4.025 23 C -0.139 4.139 24 C -0.182 4.182 25 C -0.147 4.147 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.340 0.660 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.051 0.949 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -2.678 27.065 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 H 0.116 0.884 4 N -0.326 5.326 5 C -0.055 4.055 6 C -0.130 4.130 7 C -0.011 4.011 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.090 4.090 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.075 4.075 22 C -0.025 4.025 23 C -0.196 4.196 24 C -0.238 4.238 25 C -0.204 4.204 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.504 -2.779 26.779 27.297 hybrid contribution 1.206 0.184 -1.133 1.665 sum -3.298 -2.596 25.646 25.987 Atomic orbital electron populations 1.22459 0.93766 1.01799 1.04135 1.21858 0.96389 0.98064 0.86270 0.88429 1.60699 1.33440 1.33754 1.04664 1.21836 0.99755 0.93458 0.90425 1.21369 0.99558 0.98316 0.93746 1.18953 0.94826 0.94381 0.92919 1.21675 1.43935 0.96851 0.95879 0.92325 1.25995 0.95642 0.95795 1.02427 1.70088 1.49755 1.10679 1.26835 0.85494 0.79209 0.78366 0.77949 1.19196 1.20666 1.19135 1.19882 0.99122 0.95674 0.94330 1.21212 0.98938 0.95245 0.99547 1.21371 1.00270 1.00626 0.92631 1.21431 0.99191 0.96027 0.97880 1.21316 0.98583 0.95423 0.98699 1.19857 0.98835 0.96619 0.92212 1.19489 0.95489 0.91093 0.96398 1.22003 1.00760 1.00331 0.96462 1.23150 1.01520 1.00416 0.98761 1.22135 0.93426 1.01912 1.02914 0.93293 0.87555 0.93089 0.83977 0.91935 0.96135 0.93374 0.92989 0.99001 0.99119 0.92726 0.85800 0.84797 0.84005 0.83938 0.93212 0.91343 0.91051 0.88941 0.91689 0.93494 0.90776 0.91177 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 7.58 71.98 0.55 -3.45 16 2 C 0.08 2.12 2.02 44.17 0.09 2.21 16 3 H 0.10 2.54 3.29 -10.43 -0.03 2.51 16 4 N -0.69 -21.14 5.80 -495.47 -2.87 -24.01 16 5 C 0.07 2.69 5.48 86.30 0.47 3.16 16 6 C -0.09 -3.98 5.41 30.59 0.17 -3.82 16 7 C 0.03 1.47 4.97 29.85 0.15 1.62 16 8 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 11 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 12 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C -0.09 -2.15 5.01 -19.86 -0.10 -2.25 16 17 C -0.13 -3.14 8.97 22.27 0.20 -2.94 16 18 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 19 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 20 C -0.12 -2.13 9.14 22.27 0.20 -1.93 16 21 C -0.07 -1.50 4.34 -19.87 -0.09 -1.59 16 22 C -0.02 -0.41 0.70 -52.93 -0.04 -0.44 16 23 C -0.14 -1.81 7.47 71.99 0.54 -1.27 16 24 C -0.18 -3.47 6.27 71.98 0.45 -3.02 16 25 C -0.15 -2.10 7.59 71.98 0.55 -1.56 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 27 H 0.11 2.09 1.99 -2.39 0.00 2.09 16 28 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 29 H 0.34 10.01 6.31 -89.70 -0.57 9.45 16 30 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 31 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.12 3.08 6.14 -2.91 -0.02 3.06 16 38 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.14 1.80 6.18 -2.91 -0.02 1.78 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.74 6.50 -2.39 -0.02 0.72 16 44 H 0.09 1.90 3.01 -2.39 -0.01 1.90 16 45 H 0.06 1.07 8.03 -2.39 -0.02 1.05 16 46 H 0.05 1.02 6.71 -2.38 -0.02 1.01 16 47 H 0.07 0.83 7.69 -2.39 -0.02 0.81 16 48 H 0.07 0.93 7.39 -2.38 -0.02 0.91 16 49 H 0.06 0.98 6.29 -2.39 -0.02 0.96 16 Total: -1.00 -66.13 361.69 4.06 -62.07 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.34 Total: 23.50 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 4.28 Total: -51.09 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.59 Total: -81.66 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.13 4.06 -62.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534352440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.205 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds