Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.53001 * 109.47245 * 120.27226 * 9 8 7 11 11 C 1.52994 * 109.47422 * 240.27559 * 9 8 7 12 12 N 1.46904 * 109.47018 * 0.27877 * 9 8 7 13 13 C 1.46893 * 111.00178 * 179.97438 * 12 9 8 14 14 C 1.53001 * 109.47561 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47517 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99528 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00533 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99508 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47017 * 89.99928 * 19 17 15 21 21 H 1.48503 * 109.46959 * 210.00141 * 19 17 15 22 22 H 1.48503 * 109.46985 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09001 * 109.46898 * 60.00098 * 10 9 8 37 37 H 1.08998 * 109.47157 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47605 * 300.00247 * 10 9 8 39 39 H 1.09004 * 109.46908 * 60.00022 * 11 9 8 40 40 H 1.08998 * 109.47394 * 179.97438 * 11 9 8 41 41 H 1.09001 * 109.47344 * 300.00290 * 11 9 8 42 42 H 1.00899 * 111.00210 * 56.04126 * 12 9 8 43 43 H 1.09000 * 109.47154 * 299.99951 * 13 12 9 44 44 H 1.09008 * 109.47032 * 59.99722 * 13 12 9 45 45 H 1.09000 * 109.47249 * 300.00386 * 14 13 12 46 46 H 1.09008 * 109.46772 * 60.00056 * 14 13 12 47 47 H 0.97002 * 120.00380 * 180.02562 * 18 17 15 48 48 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 49 49 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 4.9858 -2.7237 4.7186 11 6 2.9455 -2.0032 5.9677 12 7 2.9666 -4.1093 4.7182 13 6 3.4381 -4.8344 5.9055 14 6 2.9091 -6.2696 5.8702 15 6 3.3933 -7.0136 7.0879 16 1 4.0159 -6.5128 7.8146 17 6 3.0416 -8.3337 7.2742 18 7 2.2840 -8.9436 6.3891 19 14 3.6413 -9.2558 8.7841 20 1 2.6571 -9.0967 9.8846 21 1 3.7900 -10.6968 8.4574 22 1 4.9536 -8.7069 9.2105 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 5.3489 -1.6959 4.7188 37 1 5.3492 -3.2379 5.6084 38 1 5.3495 -3.2373 3.8287 39 1 1.8555 -2.0036 5.9676 40 1 3.3085 -2.5173 6.8577 41 1 3.3085 -0.9754 5.9679 42 1 3.2363 -4.5878 3.8718 43 1 4.5280 -4.8487 5.9134 44 1 3.0748 -4.3355 6.8040 45 1 1.8192 -6.2550 5.8624 46 1 3.2721 -6.7686 4.9717 47 1 2.0362 -9.8722 6.5204 48 1 3.9077 -0.1652 3.9806 49 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538205277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -1.268485 kcal Electronic energy + Delta-G solvation = -23121.400883 eV Core-core repulsion = 20047.167584 eV Total energy + Delta-G solvation = -3074.233299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14623 -38.13910 -35.73943 -33.39685 -31.66392 -30.95207 -28.95053 -28.22025 -27.44293 -27.42741 -27.06759 -24.46805 -23.02116 -22.01113 -20.63158 -19.65088 -18.77219 -16.84054 -16.26343 -15.42970 -15.18667 -14.63836 -14.46646 -14.40391 -14.26297 -14.07823 -13.59585 -13.43897 -13.30222 -12.88205 -12.72757 -12.60010 -12.22935 -12.08383 -12.05257 -11.89167 -11.74714 -11.71509 -11.27657 -11.24023 -11.16706 -11.03254 -10.89190 -10.76887 -10.56598 -10.45125 -10.29952 -9.88756 -9.34755 -9.12045 -8.74858 -8.38873 -8.33511 -7.76104 -5.98510 -4.00871 1.47722 1.57448 3.32704 3.38787 3.41783 3.87801 4.43131 4.45897 4.59164 4.67486 4.81256 4.88648 5.12138 5.14505 5.16834 5.32255 5.35835 5.37535 5.39147 5.42202 5.55227 5.55427 5.64855 5.68024 5.73473 5.78864 5.82671 5.87398 5.93493 5.95840 6.05576 6.10468 6.11346 6.18254 6.22043 6.29204 6.40510 6.44759 6.54637 6.66121 6.73946 6.83069 7.03864 7.16228 7.54707 7.75132 7.85140 7.97834 8.10579 8.45505 9.06520 9.62830 11.12924 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.002879 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.109449 B = 9723.148102 C =10300.643291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.117 4.117 7 C -0.099 4.099 8 C -0.066 4.066 9 C 0.146 3.854 10 C -0.176 4.176 11 C -0.133 4.133 12 N -0.679 5.679 13 C 0.061 3.939 14 C 0.026 3.974 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.115 4.115 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.336 0.664 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.024 0.976 46 H 0.012 0.988 47 H 0.260 0.740 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 20.623 -12.990 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.135 4.135 7 C -0.117 4.117 8 C -0.066 4.066 9 C 0.054 3.946 10 C -0.235 4.235 11 C -0.191 4.191 12 N -0.310 5.310 13 C -0.066 4.066 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.134 4.134 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.154 0.846 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.494 20.605 -12.740 24.230 hybrid contribution 1.258 -0.790 0.637 1.616 sum 0.763 19.814 -12.103 23.231 Atomic orbital electron populations 1.21887 0.93844 1.02172 1.01625 1.19469 0.95598 0.94847 0.92942 1.21948 1.01107 0.95196 1.01708 1.21884 1.01184 1.00337 0.96107 1.19721 0.98357 0.94194 0.95821 1.20972 1.00559 0.94213 0.97754 1.21193 0.96454 1.01064 0.93037 1.19841 0.97352 0.93827 0.95580 1.19744 0.91822 0.90344 0.92657 1.22545 0.96752 1.01796 1.02395 1.21856 1.01970 0.98712 0.96516 1.60854 1.63058 1.00752 1.06327 1.22251 0.96369 0.96892 0.91130 1.19060 0.97153 0.88226 0.96728 1.21172 1.31451 0.96185 1.07101 0.92820 1.24996 0.95209 0.97697 0.96454 1.69969 1.36572 1.11676 1.35039 0.86607 0.79153 0.79032 0.83269 1.20641 1.21238 1.19954 1.20913 1.00539 0.94365 0.97567 1.21028 0.98966 0.99766 0.94580 0.92535 0.92612 0.92317 0.92366 0.92622 0.92336 0.92327 0.92610 0.92582 0.86517 0.84644 0.92632 0.91555 0.92808 0.91885 0.91848 0.92942 0.84562 0.96191 0.91977 0.95738 0.96941 0.93018 0.86586 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.29 37.16 0.31 -0.84 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.08 7.13 37.16 0.27 -0.81 16 4 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 5 C -0.08 -0.90 4.76 -104.62 -0.50 -1.40 16 6 C -0.12 -1.43 8.71 -39.58 -0.34 -1.77 16 7 C -0.10 -1.39 9.14 -39.58 -0.36 -1.75 16 8 C -0.07 -0.91 4.77 -104.63 -0.50 -1.41 16 9 C 0.15 2.16 0.79 -132.75 -0.11 2.05 16 10 C -0.18 -2.44 8.04 37.16 0.30 -2.14 16 11 C -0.13 -1.90 8.05 37.15 0.30 -1.60 16 12 N -0.68 -11.99 5.09 -101.14 -0.52 -12.51 16 13 C 0.06 1.28 4.84 -3.83 -0.02 1.26 16 14 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.12 -1.41 8.71 -39.58 -0.34 -1.75 16 24 C -0.13 -1.40 8.98 -39.58 -0.36 -1.75 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 28 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 31 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.12 1.27 7.10 -52.49 -0.37 0.90 16 35 H 0.14 2.00 6.41 -52.48 -0.34 1.66 16 36 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 37 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 41 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 42 H 0.34 5.85 7.57 -39.29 -0.30 5.55 16 43 H 0.02 0.41 6.30 -51.93 -0.33 0.08 16 44 H 0.06 1.30 6.30 -51.92 -0.33 0.97 16 45 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.12 1.25 7.10 -52.49 -0.37 0.88 16 49 H 0.12 1.11 5.89 -52.49 -0.31 0.80 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -29.86 373.80 -9.57 -39.44 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.67 Total: 3.13 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -1.74 Total: -26.14 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.22 Total: -38.82 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.86 -9.57 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538205277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.170 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds