Wall clock time and date at job start Tue Mar 31 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.53001 * 109.47245 * 120.27226 * 9 8 7 11 11 C 1.52994 * 109.47422 * 240.27559 * 9 8 7 12 12 N 1.46904 * 109.47018 * 0.27877 * 9 8 7 13 13 C 1.46893 * 111.00178 * 179.97438 * 12 9 8 14 14 C 1.53001 * 109.47561 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47517 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99528 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00533 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99508 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47017 * 89.99928 * 19 17 15 21 21 H 1.48503 * 109.46959 * 210.00141 * 19 17 15 22 22 H 1.48503 * 109.46985 * 330.00331 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 24 24 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 25 25 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 30 30 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 31 31 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 32 32 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 33 33 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09001 * 109.46898 * 60.00098 * 10 9 8 37 37 H 1.08998 * 109.47157 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47605 * 300.00247 * 10 9 8 39 39 H 1.09004 * 109.46908 * 60.00022 * 11 9 8 40 40 H 1.08998 * 109.47394 * 179.97438 * 11 9 8 41 41 H 1.09001 * 109.47344 * 300.00290 * 11 9 8 42 42 H 1.00899 * 111.00210 * 56.04126 * 12 9 8 43 43 H 1.09000 * 109.47154 * 299.99951 * 13 12 9 44 44 H 1.09008 * 109.47032 * 59.99722 * 13 12 9 45 45 H 1.09000 * 109.47249 * 300.00386 * 14 13 12 46 46 H 1.09008 * 109.46772 * 60.00056 * 14 13 12 47 47 H 0.97002 * 120.00380 * 180.02562 * 18 17 15 48 48 H 1.08001 * 120.00274 * 179.72697 * 23 8 7 49 49 H 1.07997 * 120.00460 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 4.9858 -2.7237 4.7186 11 6 2.9455 -2.0032 5.9677 12 7 2.9666 -4.1093 4.7182 13 6 3.4381 -4.8344 5.9055 14 6 2.9091 -6.2696 5.8702 15 6 3.3933 -7.0136 7.0879 16 1 4.0159 -6.5128 7.8146 17 6 3.0416 -8.3337 7.2742 18 7 2.2840 -8.9436 6.3891 19 14 3.6413 -9.2558 8.7841 20 1 2.6571 -9.0967 9.8846 21 1 3.7900 -10.6968 8.4574 22 1 4.9536 -8.7069 9.2105 23 6 3.2870 -0.6901 3.2695 24 6 2.8267 -0.0386 2.1406 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7208 -1.2495 34 1 1.0771 -2.5587 0.7384 35 1 1.8898 -3.7166 2.7539 36 1 5.3489 -1.6959 4.7188 37 1 5.3492 -3.2379 5.6084 38 1 5.3495 -3.2373 3.8287 39 1 1.8555 -2.0036 5.9676 40 1 3.3085 -2.5173 6.8577 41 1 3.3085 -0.9754 5.9679 42 1 3.2363 -4.5878 3.8718 43 1 4.5280 -4.8487 5.9134 44 1 3.0748 -4.3355 6.8040 45 1 1.8192 -6.2550 5.8624 46 1 3.2721 -6.7686 4.9717 47 1 2.0362 -9.8722 6.5204 48 1 3.9077 -0.1652 3.9806 49 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538205277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:36 Heat of formation + Delta-G solvation = -15.944611 kcal Electronic energy + Delta-G solvation = -23122.037288 eV Core-core repulsion = 20047.167584 eV Total energy + Delta-G solvation = -3074.869703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11585 -39.22210 -36.80530 -35.33430 -33.28456 -31.99313 -30.19180 -29.67639 -28.22090 -28.14363 -28.07253 -26.27596 -24.22996 -23.02635 -22.31437 -20.69231 -19.76837 -18.49479 -17.83576 -16.62872 -16.38578 -16.22487 -15.78035 -15.45027 -15.17970 -15.12904 -14.74151 -14.49725 -14.31327 -14.23045 -13.92943 -13.82544 -13.53138 -13.29932 -13.03413 -12.87530 -12.84264 -12.72080 -12.71399 -12.51217 -12.45209 -12.28940 -12.09095 -11.90968 -11.75212 -11.73669 -11.40974 -11.34809 -11.22694 -11.16168 -10.56458 -9.71225 -9.40361 -9.16470 -8.20503 -6.31899 0.52044 0.60979 1.39422 1.41188 1.52014 2.39890 2.91866 3.12913 3.29007 3.65636 3.83898 3.88595 4.10626 4.16102 4.21616 4.26282 4.32150 4.44643 4.49485 4.58538 4.62995 4.71743 4.73299 4.77528 4.81059 4.91113 4.93316 4.93427 4.95900 5.04070 5.05440 5.06803 5.10584 5.19888 5.23972 5.27168 5.33594 5.35740 5.42673 5.46308 5.46711 5.64202 5.72011 5.74133 5.82927 5.85842 6.16379 6.21452 6.35692 6.53690 6.85677 7.37356 8.91741 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.002879 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.109449 B = 9723.148102 C =10300.643291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.079 4.079 6 C -0.124 4.124 7 C -0.120 4.120 8 C -0.079 4.079 9 C 0.146 3.854 10 C -0.170 4.170 11 C -0.131 4.131 12 N -0.685 5.685 13 C 0.083 3.917 14 C 0.033 3.967 15 C -0.542 4.542 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.335 0.665 43 H 0.024 0.976 44 H 0.062 0.938 45 H -0.009 1.009 46 H -0.012 1.012 47 H 0.263 0.737 48 H 0.135 0.865 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 22.845 -13.000 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.194 4.194 5 C -0.079 4.079 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.080 4.080 9 C 0.055 3.945 10 C -0.229 4.229 11 C -0.188 4.188 12 N -0.315 5.315 13 C -0.046 4.046 14 C -0.004 4.004 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.134 4.134 24 C -0.142 4.142 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.153 0.847 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.010 0.990 46 H 0.006 0.994 47 H 0.072 0.928 48 H 0.153 0.847 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.478 22.848 -12.754 26.171 hybrid contribution 0.901 -1.435 0.541 1.779 sum 1.379 21.414 -12.213 24.690 Atomic orbital electron populations 1.21884 0.93530 1.01887 1.02167 1.19537 0.95827 0.95593 0.91956 1.21942 1.01276 0.94092 1.02510 1.21878 1.00922 1.00128 0.96497 1.20038 0.97586 0.93677 0.96633 1.21082 1.00704 0.95022 0.97342 1.21148 0.97795 1.00564 0.94363 1.19768 0.98270 0.94727 0.95196 1.19826 0.92627 0.88333 0.93748 1.22475 0.95717 1.03169 1.01538 1.21849 1.01087 1.00166 0.95694 1.60758 1.63530 1.02213 1.05045 1.21833 0.96158 0.94014 0.92545 1.18907 0.94976 0.91384 0.95159 1.21606 1.31656 0.96930 1.07898 0.92137 1.25981 0.95187 0.98778 0.99859 1.70110 1.37751 1.12164 1.37206 0.85433 0.79078 0.77456 0.78983 1.19750 1.20711 1.18662 1.21109 1.00511 0.93516 0.98299 1.21346 0.98166 1.00819 0.93901 0.93042 0.91016 0.93071 0.92095 0.91300 0.92148 0.93030 0.91050 0.92962 0.85902 0.86612 0.90117 0.92681 0.93318 0.93247 0.92829 0.90138 0.84671 0.95811 0.92000 0.99022 0.99374 0.92777 0.84730 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.29 71.98 0.60 -1.46 16 2 C -0.03 -0.45 0.85 -52.93 -0.05 -0.50 16 3 C -0.14 -1.71 7.13 71.98 0.51 -1.20 16 4 C -0.14 -2.01 8.29 71.98 0.60 -1.41 16 5 C -0.08 -1.64 4.76 -19.87 -0.09 -1.73 16 6 C -0.12 -3.01 8.71 22.27 0.19 -2.82 16 7 C -0.12 -3.45 9.14 22.27 0.20 -3.24 16 8 C -0.08 -2.15 4.77 -19.87 -0.09 -2.24 16 9 C 0.15 4.26 0.79 2.78 0.00 4.27 16 10 C -0.17 -4.52 8.04 71.98 0.58 -3.94 16 11 C -0.13 -3.61 8.05 71.98 0.58 -3.04 16 12 N -0.68 -25.08 5.09 -473.90 -2.41 -27.49 16 13 C 0.08 3.55 4.84 86.30 0.42 3.97 16 14 C 0.03 1.81 5.23 29.85 0.16 1.97 16 15 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 19 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 C -0.12 -2.58 8.71 22.27 0.19 -2.39 16 24 C -0.12 -2.48 8.98 22.27 0.20 -2.28 16 25 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.83 7.39 -2.39 -0.02 0.81 16 28 H 0.06 0.72 7.51 -2.38 -0.02 0.70 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.72 7.51 -2.39 -0.02 0.70 16 31 H 0.05 0.82 7.39 -2.39 -0.02 0.80 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.12 2.73 7.10 -2.91 -0.02 2.71 16 35 H 0.12 3.69 6.41 -2.91 -0.02 3.67 16 36 H 0.08 1.72 7.39 -2.39 -0.02 1.71 16 37 H 0.05 1.58 6.40 -2.39 -0.02 1.56 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 40 H 0.05 1.57 6.40 -2.39 -0.02 1.55 16 41 H 0.08 1.75 7.39 -2.39 -0.02 1.73 16 42 H 0.33 12.33 7.57 -89.70 -0.68 11.66 16 43 H 0.02 1.00 6.30 -2.39 -0.02 0.98 16 44 H 0.06 2.64 6.30 -2.38 -0.02 2.63 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 47 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 48 H 0.13 2.44 7.10 -2.91 -0.02 2.42 16 49 H 0.14 2.15 5.89 -2.91 -0.02 2.14 16 Total: -1.00 -65.28 373.80 4.82 -60.46 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.23 Total: 24.58 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 4.69 Total: -46.84 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.13 Total: -85.07 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.28 4.82 -60.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538205277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.518 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds