Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 N 1.46901 * 109.47310 * 120.00598 * 2 1 3 5 5 C 1.46901 * 110.99525 * 295.04956 * 4 2 1 6 6 C 1.50699 * 109.46791 * 160.32304 * 5 4 2 7 7 H 1.08003 * 120.00435 * 4.02795 * 6 5 4 8 8 C 1.37880 * 119.99785 * 184.03150 * 6 5 4 9 9 N 1.31516 * 119.99959 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47183 * 59.99774 * 10 8 6 12 12 H 1.48493 * 109.47344 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46824 * 300.00096 * 10 8 6 14 14 C 1.46900 * 111.00294 * 171.09191 * 4 2 1 15 15 C 1.53001 * 109.47123 * 293.95503 * 14 4 2 16 16 H 1.09002 * 109.47323 * 54.99725 * 15 14 4 17 17 C 1.53005 * 109.46760 * 294.99698 * 15 14 4 18 18 C 1.52998 * 109.47101 * 175.00164 * 15 14 4 19 19 C 1.52996 * 109.47220 * 184.99995 * 18 15 14 20 20 C 1.50701 * 109.47338 * 179.97438 * 19 18 15 21 21 C 1.38230 * 119.99909 * 269.72481 * 20 19 18 22 22 C 1.38235 * 119.99729 * 179.76425 * 21 20 19 23 23 C 1.38233 * 120.00367 * 0.50771 * 22 21 20 24 24 C 1.38241 * 119.99526 * 359.74623 * 23 22 21 25 25 C 1.38232 * 119.99760 * 89.99849 * 20 19 18 26 26 H 1.09005 * 109.46826 * 306.07660 * 1 2 3 27 27 H 1.08999 * 109.47116 * 66.07537 * 1 2 3 28 28 H 1.08996 * 109.47431 * 186.07296 * 1 2 3 29 29 H 1.09009 * 109.47043 * 240.00219 * 2 1 3 30 30 H 1.08991 * 109.47139 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47176 * 300.00658 * 3 2 1 32 32 H 1.09005 * 109.46302 * 60.00013 * 3 2 1 33 33 H 1.08998 * 109.46898 * 280.31691 * 5 4 2 34 34 H 1.08993 * 109.47707 * 40.31928 * 5 4 2 35 35 H 0.97002 * 119.99822 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47014 * 173.94924 * 14 4 2 37 37 H 1.08997 * 109.46784 * 53.95198 * 14 4 2 38 38 H 1.08992 * 109.47245 * 299.99953 * 17 15 14 39 39 H 1.08998 * 109.46982 * 60.00219 * 17 15 14 40 40 H 1.09005 * 109.46866 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.47334 * 64.99808 * 18 15 14 42 42 H 1.08999 * 109.46922 * 304.99574 * 18 15 14 43 43 H 1.09008 * 109.46945 * 299.99676 * 19 18 15 44 44 H 1.08999 * 109.47446 * 59.99254 * 19 18 15 45 45 H 1.08006 * 120.00050 * 359.97438 * 21 20 19 46 46 H 1.08001 * 119.99624 * 180.22905 * 22 21 20 47 47 H 1.07996 * 120.00718 * 179.72157 * 23 22 21 48 48 H 1.07997 * 119.99884 * 179.97438 * 24 23 22 49 49 H 1.08003 * 120.00441 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.6477 0.0384 2.4181 6 6 1.7196 -0.8905 3.6026 7 1 2.0746 -1.9025 3.4746 8 6 1.3321 -0.4484 4.8498 9 7 0.9003 0.7839 5.0058 10 14 1.4206 -1.6000 6.3180 11 1 2.8238 -2.0443 6.5148 12 1 0.9508 -0.8888 7.5339 13 1 0.5568 -2.7827 6.0721 14 6 3.4726 -0.8989 1.1319 15 6 3.7978 -1.8681 -0.0064 16 1 3.3683 -1.4943 -0.9359 17 6 3.2080 -3.2438 0.3110 18 6 5.3157 -1.9866 -0.1574 19 6 5.6410 -2.8566 -1.3731 20 6 7.1361 -2.9728 -1.5222 21 6 7.8274 -2.0551 -2.2908 22 6 9.1994 -2.1588 -2.4236 23 6 9.8789 -3.1863 -1.7964 24 6 9.1868 -4.1072 -1.0321 25 6 7.8154 -4.0004 -0.8950 26 1 -0.3633 0.6052 0.8306 27 1 -0.3633 0.4167 -0.9394 28 1 -0.3634 -1.0218 0.1087 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 2.3357 0.8706 2.5668 34 1 0.6319 0.4203 2.3170 35 1 0.6280 1.0950 5.8833 36 1 3.8246 -1.3155 2.0756 37 1 3.9669 0.0552 0.9490 38 1 3.6375 -3.6176 1.2403 39 1 2.1266 -3.1594 0.4186 40 1 3.4393 -3.9342 -0.5002 41 1 5.7355 -2.4432 0.7389 42 1 5.7456 -0.9945 -0.2952 43 1 5.2110 -3.8488 -1.2354 44 1 5.2212 -2.4001 -2.2695 45 1 7.2959 -1.2550 -2.7848 46 1 9.7400 -1.4396 -3.0211 47 1 10.9502 -3.2701 -1.9038 48 1 9.7175 -4.9102 -0.5424 49 1 7.2747 -4.7202 -0.2985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538308452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = 0.191075 kcal Electronic energy + Delta-G solvation = -23197.198926 eV Core-core repulsion = 20123.028919 eV Total energy + Delta-G solvation = -3074.170007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.45523 -38.22263 -35.67689 -32.72735 -32.53445 -30.99287 -30.41773 -28.17933 -27.10334 -26.35853 -25.23630 -23.39946 -22.67239 -22.24534 -20.97411 -19.85893 -18.13444 -16.86597 -16.46348 -15.54572 -15.34273 -15.06769 -14.64902 -14.51223 -14.05671 -13.77548 -13.52882 -13.45452 -13.07007 -12.93331 -12.59116 -12.34117 -12.15331 -12.09064 -11.77958 -11.55778 -11.32637 -11.18999 -11.11702 -11.08995 -10.86976 -10.74178 -10.61603 -10.49283 -10.39965 -10.23403 -10.08203 -9.90656 -9.35946 -9.14453 -9.03297 -8.72697 -8.34427 -7.08803 -5.96302 -3.96473 1.26142 1.28863 3.36455 3.40403 3.43461 3.67910 4.46854 4.66494 4.73700 4.86811 4.96923 5.03621 5.13025 5.23865 5.38847 5.40175 5.40830 5.52653 5.53980 5.63771 5.73967 5.80045 5.83412 5.92336 5.95743 5.98681 6.05573 6.15364 6.17000 6.26776 6.31413 6.35559 6.39259 6.40560 6.48322 6.50131 6.51915 6.57963 6.62997 6.84758 6.86617 6.90626 6.93315 6.95990 7.38226 7.45763 7.89685 8.22124 8.34254 8.66060 9.11402 9.67026 11.14182 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003522 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.057262 B = 7948.811310 C = 9015.702428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 C -0.184 4.184 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.066 3.934 15 C -0.087 4.087 16 H 0.064 0.936 17 C -0.135 4.135 18 C -0.107 4.107 19 C -0.082 4.082 20 C -0.073 4.073 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.063 0.937 33 H -0.012 1.012 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.146 -6.131 -15.284 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.062 4.062 15 C -0.106 4.106 16 H 0.082 0.918 17 C -0.192 4.192 18 C -0.145 4.145 19 C -0.120 4.120 20 C -0.073 4.073 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.006 0.994 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.834 -6.469 -15.107 20.251 hybrid contribution 0.529 0.388 0.918 1.128 sum 12.363 -6.081 -14.189 19.778 Atomic orbital electron populations 1.21810 0.95170 1.02266 1.00456 1.21655 0.95407 0.91768 0.94704 1.22467 1.00842 0.99227 1.01728 1.62338 1.11112 1.49015 1.02473 1.19748 0.96024 0.92249 0.85360 1.21172 1.42309 0.98639 0.91840 0.92087 1.24971 0.95655 0.95145 0.98896 1.69947 1.44739 1.15980 1.23476 0.86618 0.78354 0.80885 0.81875 1.20387 1.21481 1.20245 1.22025 0.89576 0.96218 0.98381 1.21200 0.93516 0.96937 0.98961 0.91788 1.21717 1.02518 0.95087 0.99888 1.21593 0.96471 0.99261 0.97142 1.20716 0.90449 1.01505 0.99281 1.20047 0.96361 0.94699 0.96233 1.21087 0.94279 0.99021 0.99400 1.21132 0.94499 0.98298 0.99884 1.21108 0.99695 0.95646 0.98500 1.21148 0.94459 0.99160 0.98985 1.21107 0.94359 0.98401 0.99771 0.92137 0.93841 0.92216 0.91510 0.93279 0.93566 0.91843 0.99411 0.94556 0.93030 0.90394 0.96222 0.93208 0.91226 0.94277 0.91810 0.92328 0.90621 0.91241 0.86180 0.86330 0.86432 0.86278 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.00 37.16 0.33 -2.07 16 2 C 0.07 1.31 2.80 -67.71 -0.19 1.12 16 3 C -0.18 -3.15 8.54 37.16 0.32 -2.83 16 4 N -0.53 -10.90 3.84 -228.08 -0.87 -11.77 16 5 C 0.19 4.87 3.38 -4.98 -0.02 4.86 16 6 C -0.50 -14.00 8.60 -34.44 -0.30 -14.29 16 7 H 0.06 1.69 7.68 -52.48 -0.40 1.29 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.07 1.24 4.05 -3.82 -0.02 1.23 16 15 C -0.09 -1.29 2.32 -90.62 -0.21 -1.50 16 16 H 0.06 0.92 6.18 -51.93 -0.32 0.60 16 17 C -0.13 -2.00 8.84 37.16 0.33 -1.67 16 18 C -0.11 -1.37 4.66 -26.73 -0.12 -1.49 16 19 C -0.08 -0.90 5.10 -27.88 -0.14 -1.04 16 20 C -0.07 -0.82 5.13 -104.63 -0.54 -1.35 16 21 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 26 H 0.06 1.17 6.46 -51.93 -0.34 0.83 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.07 6.03 -51.92 -0.31 0.76 16 30 H 0.05 0.82 6.53 -51.93 -0.34 0.48 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.24 6.79 -51.93 -0.35 0.88 16 33 H -0.01 -0.33 7.32 -51.93 -0.38 -0.71 16 34 H 0.04 0.99 5.92 -51.93 -0.31 0.69 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.64 7.34 -51.93 -0.38 1.26 16 37 H 0.02 0.37 6.35 -51.93 -0.33 0.04 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.17 7.75 -51.93 -0.40 0.77 16 40 H 0.04 0.48 6.57 -51.93 -0.34 0.14 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.80 6.51 -51.92 -0.34 0.46 16 44 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 49 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -29.50 378.36 -10.82 -40.32 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.75 Total: 0.75 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -2.61 Total: -25.68 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.14 Total: -37.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.50 -10.82 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538308452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.507 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds