Wall clock time and date at job start Tue Mar 31 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46756 * 240.00281 * 2 1 3 5 5 C 1.38234 * 120.00402 * 59.73077 * 4 2 1 6 6 C 1.38232 * 119.99936 * 179.74717 * 5 4 2 7 7 C 1.38228 * 120.00307 * 0.54338 * 6 5 4 8 8 C 1.50704 * 120.00435 * 179.72921 * 7 6 5 9 9 H 1.08998 * 109.47341 * 199.98101 * 8 7 6 10 10 N 1.46907 * 109.46766 * 319.97936 * 8 7 6 11 11 C 1.46898 * 110.99922 * 274.62484 * 10 8 7 12 12 C 1.53001 * 109.46923 * 184.04209 * 11 10 8 13 13 C 1.50698 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00188 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00267 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99695 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00294 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46799 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47220 * 120.00082 * 17 15 13 20 20 H 1.48504 * 109.47157 * 240.00246 * 17 15 13 21 21 C 1.52995 * 109.47070 * 79.97836 * 8 7 6 22 22 C 1.52998 * 109.46981 * 55.22231 * 21 8 7 23 23 C 1.53000 * 109.47277 * 175.22338 * 21 8 7 24 24 C 1.38237 * 120.00021 * 359.71189 * 7 6 5 25 25 C 1.38237 * 119.99733 * 240.00227 * 4 2 1 26 26 H 1.09007 * 109.46981 * 59.99582 * 1 2 3 27 27 H 1.08996 * 109.47684 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46961 * 299.99998 * 1 2 3 29 29 H 1.08997 * 109.47014 * 120.00469 * 2 1 3 30 30 H 1.08997 * 109.47416 * 300.00223 * 3 2 1 31 31 H 1.08998 * 109.46902 * 60.00244 * 3 2 1 32 32 H 1.09001 * 109.46905 * 179.97438 * 3 2 1 33 33 H 1.08003 * 119.99299 * 359.97438 * 5 4 2 34 34 H 1.08005 * 119.99819 * 180.27544 * 6 5 4 35 35 H 1.00897 * 110.99783 * 150.67052 * 10 8 7 36 36 H 1.09002 * 109.47343 * 304.03512 * 11 10 8 37 37 H 1.09000 * 109.47419 * 64.03976 * 11 10 8 38 38 H 1.09003 * 109.46855 * 299.99346 * 12 11 10 39 39 H 1.09000 * 109.47263 * 59.99671 * 12 11 10 40 40 H 0.97005 * 120.00184 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47000 * 295.22179 * 21 8 7 42 42 H 1.09004 * 109.47296 * 60.00129 * 22 21 8 43 43 H 1.09003 * 109.46763 * 179.97438 * 22 21 8 44 44 H 1.08995 * 109.47349 * 299.99734 * 22 21 8 45 45 H 1.08998 * 109.47356 * 60.17708 * 23 21 8 46 46 H 1.08992 * 109.47368 * 180.18549 * 23 21 8 47 47 H 1.08999 * 109.46838 * 300.18553 * 23 21 8 48 48 H 1.08000 * 120.00118 * 179.97438 * 24 7 6 49 49 H 1.08005 * 120.00087 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1587 -0.8899 -3.6147 7 6 2.9530 -2.0141 -3.4880 8 6 3.4550 -2.7248 -4.7185 9 1 3.7443 -3.7428 -4.4575 10 7 2.3908 -2.7624 -5.7305 11 6 1.5014 -3.9118 -5.5167 12 6 0.4696 -3.9749 -6.6448 13 6 -0.4432 -5.1537 -6.4251 14 1 -0.3015 -5.7940 -5.5670 15 6 -1.4595 -5.4147 -7.3196 16 7 -1.6318 -4.6353 -8.3648 17 14 -2.5906 -6.8762 -7.0478 18 1 -2.1878 -7.5902 -5.8095 19 1 -3.9907 -6.4001 -6.9121 20 1 -2.4921 -7.8006 -8.2059 21 6 4.6667 -1.9782 -5.2799 22 6 5.7284 -1.8349 -4.1877 23 6 5.2488 -2.7632 -6.4572 24 6 3.2873 -2.4863 -2.2325 25 6 2.8269 -1.8344 -1.1037 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.0689 0.6340 -2.5850 34 1 1.8979 -0.5209 -4.5956 35 1 2.7781 -2.7732 -6.6622 36 1 2.0891 -4.8298 -5.5101 37 1 0.9887 -3.8017 -4.5611 38 1 -0.1181 -3.0570 -6.6513 39 1 0.9823 -4.0850 -7.6003 40 1 -2.3470 -4.8187 -8.9940 41 1 4.3588 -0.9892 -5.6194 42 1 6.0363 -2.8239 -3.8482 43 1 6.5918 -1.3034 -4.5879 44 1 5.3138 -1.2757 -3.3490 45 1 4.4934 -2.8626 -7.2367 46 1 6.1139 -2.2330 -6.8551 47 1 5.5536 -3.7533 -6.1184 48 1 3.9075 -3.3649 -2.1334 49 1 3.0875 -2.2037 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540342909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:06 Heat of formation + Delta-G solvation = -14.217103 kcal Electronic energy + Delta-G solvation = -23270.485321 eV Core-core repulsion = 20195.690528 eV Total energy + Delta-G solvation = -3074.794793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79537 -37.65314 -34.97819 -34.21513 -32.49578 -30.68295 -30.20869 -28.78170 -27.22210 -26.90564 -25.34801 -23.49787 -22.68953 -22.00501 -20.53081 -19.91495 -19.41842 -16.55081 -16.34391 -15.51144 -15.23693 -14.94936 -14.58503 -14.37747 -14.03081 -13.83730 -13.56345 -13.50332 -13.20242 -13.04086 -12.69634 -12.46447 -12.39928 -12.20055 -12.13649 -11.95392 -11.73008 -11.25121 -11.22008 -11.09437 -10.96538 -10.95344 -10.88781 -10.66001 -10.52873 -10.44617 -10.27829 -9.96343 -9.33066 -9.11911 -8.61944 -8.34401 -8.21484 -7.81974 -5.98292 -4.00302 1.58946 1.70601 3.32158 3.39490 3.43904 3.99171 4.44098 4.63776 4.66302 4.79054 4.92534 5.02058 5.11221 5.14618 5.24953 5.27921 5.37928 5.39541 5.45293 5.52581 5.62789 5.65408 5.69748 5.73313 5.74929 5.80329 5.87540 5.90941 5.93583 5.95897 6.10982 6.14565 6.19688 6.27509 6.30668 6.34954 6.38535 6.42240 6.49381 6.71185 6.85089 6.96371 7.02946 7.28915 7.53706 7.75211 7.86529 7.99935 8.10546 8.46298 9.06979 9.63415 11.13200 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004180 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.400583 B = 6697.271506 C = 8398.401638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.086 4.086 5 C -0.120 4.120 6 C -0.081 4.081 7 C -0.063 4.063 8 C 0.127 3.873 9 H 0.046 0.954 10 N -0.685 5.685 11 C 0.069 3.931 12 C 0.025 3.975 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.117 4.117 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.339 0.661 36 H 0.014 0.986 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.113 0.887 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.804 10.151 13.781 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.138 4.138 6 C -0.099 4.099 7 C -0.063 4.063 8 C 0.017 3.983 9 H 0.064 0.936 10 N -0.317 5.317 11 C -0.059 4.059 12 C -0.012 4.012 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.111 4.111 22 C -0.202 4.202 23 C -0.209 4.209 24 C -0.135 4.135 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.131 0.869 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.282 10.600 13.950 21.396 hybrid contribution -0.216 -1.677 -0.236 1.708 sum 12.066 8.922 13.714 20.329 Atomic orbital electron populations 1.21863 0.94442 1.02182 1.01720 1.20081 0.95902 0.95805 0.95502 1.21845 1.01022 0.95389 1.01719 1.19749 0.98347 0.96070 0.94470 1.20955 1.00529 1.00316 0.92009 1.21034 0.95583 0.94585 0.98715 1.19800 0.97273 0.95608 0.93651 1.20476 0.90340 0.96614 0.90875 0.93602 1.60613 1.19294 1.46416 1.05394 1.22165 0.94238 0.88032 1.01483 1.19075 0.92736 0.97342 0.92058 1.21210 1.13798 1.11689 1.09070 0.92779 1.24992 0.97546 0.96592 0.95208 1.69982 1.32127 1.38108 1.13084 0.86552 0.80748 0.82729 0.78077 1.19773 1.20973 1.21044 1.21234 0.94381 0.99968 0.95559 1.21833 0.98065 1.01562 0.98722 1.21909 1.00879 1.00062 0.98077 1.20951 1.00628 0.99789 0.92171 1.20871 0.99299 0.96081 0.98018 0.92317 0.92437 0.92737 0.90943 0.92407 0.92734 0.92721 0.86678 0.85243 0.84134 0.96776 0.92423 0.95700 0.96933 0.93092 0.90352 0.92981 0.92978 0.92171 0.92108 0.92530 0.92825 0.86856 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.00 37.16 0.33 -1.11 16 2 C -0.05 -0.55 3.09 -91.77 -0.28 -0.83 16 3 C -0.14 -1.25 9.01 37.16 0.33 -0.92 16 4 C -0.09 -1.07 4.78 -104.62 -0.50 -1.57 16 5 C -0.12 -1.61 8.71 -39.59 -0.34 -1.96 16 6 C -0.08 -1.21 9.32 -39.59 -0.37 -1.58 16 7 C -0.06 -0.92 3.69 -104.62 -0.39 -1.30 16 8 C 0.13 1.87 1.84 -68.86 -0.13 1.75 16 9 H 0.05 0.71 7.59 -51.93 -0.39 0.32 16 10 N -0.68 -12.08 5.58 -107.95 -0.60 -12.68 16 11 C 0.07 1.48 5.46 -3.82 -0.02 1.46 16 12 C 0.03 0.67 5.19 -27.88 -0.14 0.52 16 13 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.09 -1.13 2.61 -90.62 -0.24 -1.36 16 22 C -0.14 -1.54 8.65 37.16 0.32 -1.22 16 23 C -0.15 -1.74 9.02 37.16 0.34 -1.40 16 24 C -0.12 -1.58 8.70 -39.58 -0.34 -1.92 16 25 C -0.12 -1.57 9.67 -39.58 -0.38 -1.95 16 26 H 0.06 0.60 7.37 -51.92 -0.38 0.22 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.67 7.88 -51.93 -0.41 0.27 16 30 H 0.06 0.52 7.41 -51.93 -0.38 0.13 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.12 1.39 7.10 -52.48 -0.37 1.02 16 34 H 0.13 2.03 7.72 -52.48 -0.41 1.62 16 35 H 0.34 5.77 6.40 -39.29 -0.25 5.52 16 36 H 0.01 0.30 7.96 -51.93 -0.41 -0.11 16 37 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 45 H 0.06 0.74 6.42 -51.93 -0.33 0.41 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.11 1.38 8.04 -52.49 -0.42 0.96 16 49 H 0.11 1.20 7.95 -52.48 -0.42 0.78 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -30.09 385.15 -10.45 -40.54 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -9.14 Total: 2.88 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.23 Total: -27.08 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.13 Total: -39.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.09 -10.45 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540342909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.324 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds