Wall clock time and date at job start Tue Mar 31 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46756 * 240.00281 * 2 1 3 5 5 C 1.38234 * 120.00402 * 59.73077 * 4 2 1 6 6 C 1.38232 * 119.99936 * 179.74717 * 5 4 2 7 7 C 1.38228 * 120.00307 * 0.54338 * 6 5 4 8 8 C 1.50704 * 120.00435 * 179.72921 * 7 6 5 9 9 H 1.08998 * 109.47341 * 199.98101 * 8 7 6 10 10 N 1.46907 * 109.46766 * 319.97936 * 8 7 6 11 11 C 1.46898 * 110.99922 * 274.62484 * 10 8 7 12 12 C 1.53001 * 109.46923 * 184.04209 * 11 10 8 13 13 C 1.50698 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00188 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00267 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99695 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00294 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46799 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47220 * 120.00082 * 17 15 13 20 20 H 1.48504 * 109.47157 * 240.00246 * 17 15 13 21 21 C 1.52995 * 109.47070 * 79.97836 * 8 7 6 22 22 C 1.52998 * 109.46981 * 55.22231 * 21 8 7 23 23 C 1.53000 * 109.47277 * 175.22338 * 21 8 7 24 24 C 1.38237 * 120.00021 * 359.71189 * 7 6 5 25 25 C 1.38237 * 119.99733 * 240.00227 * 4 2 1 26 26 H 1.09007 * 109.46981 * 59.99582 * 1 2 3 27 27 H 1.08996 * 109.47684 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46961 * 299.99998 * 1 2 3 29 29 H 1.08997 * 109.47014 * 120.00469 * 2 1 3 30 30 H 1.08997 * 109.47416 * 300.00223 * 3 2 1 31 31 H 1.08998 * 109.46902 * 60.00244 * 3 2 1 32 32 H 1.09001 * 109.46905 * 179.97438 * 3 2 1 33 33 H 1.08003 * 119.99299 * 359.97438 * 5 4 2 34 34 H 1.08005 * 119.99819 * 180.27544 * 6 5 4 35 35 H 1.00897 * 110.99783 * 150.67052 * 10 8 7 36 36 H 1.09002 * 109.47343 * 304.03512 * 11 10 8 37 37 H 1.09000 * 109.47419 * 64.03976 * 11 10 8 38 38 H 1.09003 * 109.46855 * 299.99346 * 12 11 10 39 39 H 1.09000 * 109.47263 * 59.99671 * 12 11 10 40 40 H 0.97005 * 120.00184 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47000 * 295.22179 * 21 8 7 42 42 H 1.09004 * 109.47296 * 60.00129 * 22 21 8 43 43 H 1.09003 * 109.46763 * 179.97438 * 22 21 8 44 44 H 1.08995 * 109.47349 * 299.99734 * 22 21 8 45 45 H 1.08998 * 109.47356 * 60.17708 * 23 21 8 46 46 H 1.08992 * 109.47368 * 180.18549 * 23 21 8 47 47 H 1.08999 * 109.46838 * 300.18553 * 23 21 8 48 48 H 1.08000 * 120.00118 * 179.97438 * 24 7 6 49 49 H 1.08005 * 120.00087 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1587 -0.8899 -3.6147 7 6 2.9530 -2.0141 -3.4880 8 6 3.4550 -2.7248 -4.7185 9 1 3.7443 -3.7428 -4.4575 10 7 2.3908 -2.7624 -5.7305 11 6 1.5014 -3.9118 -5.5167 12 6 0.4696 -3.9749 -6.6448 13 6 -0.4432 -5.1537 -6.4251 14 1 -0.3015 -5.7940 -5.5670 15 6 -1.4595 -5.4147 -7.3196 16 7 -1.6318 -4.6353 -8.3648 17 14 -2.5906 -6.8762 -7.0478 18 1 -2.1878 -7.5902 -5.8095 19 1 -3.9907 -6.4001 -6.9121 20 1 -2.4921 -7.8006 -8.2059 21 6 4.6667 -1.9782 -5.2799 22 6 5.7284 -1.8349 -4.1877 23 6 5.2488 -2.7632 -6.4572 24 6 3.2873 -2.4863 -2.2325 25 6 2.8269 -1.8344 -1.1037 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.0689 0.6340 -2.5850 34 1 1.8979 -0.5209 -4.5956 35 1 2.7781 -2.7732 -6.6622 36 1 2.0891 -4.8298 -5.5101 37 1 0.9887 -3.8017 -4.5611 38 1 -0.1181 -3.0570 -6.6513 39 1 0.9823 -4.0850 -7.6003 40 1 -2.3470 -4.8187 -8.9940 41 1 4.3588 -0.9892 -5.6194 42 1 6.0363 -2.8239 -3.8482 43 1 6.5918 -1.3034 -4.5879 44 1 5.3138 -1.2757 -3.3490 45 1 4.4934 -2.8626 -7.2367 46 1 6.1139 -2.2330 -6.8551 47 1 5.5536 -3.7533 -6.1184 48 1 3.9075 -3.3649 -2.1334 49 1 3.0875 -2.2037 -0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540342909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:05 Heat of formation + Delta-G solvation = -28.589713 kcal Electronic energy + Delta-G solvation = -23271.108564 eV Core-core repulsion = 20195.690528 eV Total energy + Delta-G solvation = -3075.418036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86253 -38.77867 -36.20832 -35.63724 -34.36904 -31.79723 -31.46317 -30.36343 -27.95278 -27.85578 -26.91282 -25.10887 -23.73215 -23.18605 -22.25040 -20.88849 -20.50889 -18.53234 -17.61714 -16.86602 -16.40591 -16.32111 -15.97760 -15.66712 -15.36110 -14.89927 -14.70502 -14.43982 -14.38138 -14.17056 -14.12922 -13.72598 -13.70242 -13.22152 -13.17340 -13.02790 -12.91693 -12.80559 -12.76627 -12.46483 -12.16765 -12.06621 -12.03593 -11.90854 -11.83191 -11.58296 -11.42987 -11.37110 -11.28729 -11.17481 -10.58520 -9.68423 -9.32259 -9.26494 -8.21882 -6.33146 0.53935 0.64019 1.38411 1.38992 1.52326 2.39041 2.93036 3.11482 3.30112 3.77195 3.88787 3.97467 3.99143 4.08138 4.26073 4.29049 4.36732 4.40896 4.48559 4.54654 4.59121 4.65590 4.71657 4.78286 4.80314 4.82178 4.82960 4.96623 5.01055 5.01640 5.03562 5.04461 5.13571 5.20604 5.26666 5.31053 5.38575 5.39282 5.41359 5.42471 5.45531 5.64417 5.66675 5.75047 5.84037 5.87429 6.16329 6.23281 6.31723 6.57386 6.83533 7.36001 8.90377 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004180 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.400583 B = 6697.271506 C = 8398.401638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.086 4.086 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.077 4.077 8 C 0.130 3.870 9 H 0.042 0.958 10 N -0.686 5.686 11 C 0.092 3.908 12 C 0.034 3.966 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.965 3.035 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.275 1.275 21 C -0.087 4.087 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.127 4.127 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.341 0.659 36 H 0.016 0.984 37 H 0.046 0.954 38 H -0.007 1.007 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.126 0.874 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.522 9.730 15.732 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.087 4.087 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.078 4.078 8 C 0.020 3.980 9 H 0.060 0.940 10 N -0.319 5.319 11 C -0.036 4.036 12 C -0.003 4.003 13 C -0.582 4.582 14 H 0.075 0.925 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.201 1.201 21 C -0.105 4.105 22 C -0.194 4.194 23 C -0.207 4.207 24 C -0.141 4.141 25 C -0.145 4.145 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.162 0.838 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.144 0.856 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.018 10.188 15.908 22.942 hybrid contribution -0.429 -1.481 -0.833 1.752 sum 12.589 8.707 15.076 21.484 Atomic orbital electron populations 1.21863 0.94453 1.01559 1.02306 1.20140 0.95820 0.96481 0.94689 1.21821 1.01030 0.94528 1.02311 1.20068 0.97639 0.95988 0.94955 1.21095 1.00632 1.00608 0.92180 1.21012 0.96837 0.95508 0.98593 1.19827 0.98008 0.95809 0.94119 1.20538 0.90293 0.96878 0.90260 0.94001 1.60502 1.20510 1.44401 1.06479 1.21704 0.93720 0.89526 0.98698 1.18902 0.93210 0.95279 0.92915 1.21605 1.14730 1.12507 1.09382 0.92549 1.25943 0.99184 0.99686 0.94723 1.70107 1.32948 1.39973 1.13983 0.85398 0.78327 0.78840 0.78477 1.18757 1.20279 1.20090 1.21187 0.93784 0.99227 0.96351 1.21765 0.97821 1.02038 0.97817 1.21898 1.01130 1.00340 0.97364 1.21138 1.00793 1.00239 0.91920 1.21200 0.98660 0.95780 0.98824 0.93108 0.93641 0.90826 0.89602 0.92942 0.91060 0.92678 0.85902 0.86946 0.83827 0.96633 0.93589 0.98836 0.98869 0.92708 0.91030 0.92392 0.91366 0.92826 0.93448 0.90623 0.92627 0.85594 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.00 71.98 0.65 -2.01 16 2 C -0.05 -0.96 3.09 -11.54 -0.04 -0.99 16 3 C -0.14 -2.16 9.01 71.98 0.65 -1.51 16 4 C -0.09 -2.04 4.78 -19.86 -0.09 -2.14 16 5 C -0.13 -3.42 8.71 22.27 0.19 -3.23 16 6 C -0.10 -3.11 9.32 22.27 0.21 -2.90 16 7 C -0.08 -2.26 3.69 -19.87 -0.07 -2.34 16 8 C 0.13 3.85 1.84 44.17 0.08 3.93 16 9 H 0.04 1.28 7.59 -2.39 -0.02 1.27 16 10 N -0.69 -25.05 5.58 -495.44 -2.76 -27.82 16 11 C 0.09 4.10 5.46 86.30 0.47 4.57 16 12 C 0.03 1.89 5.19 29.85 0.15 2.04 16 13 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.00 0.16 5.46 84.66 0.46 0.62 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C -0.09 -2.06 2.61 -10.80 -0.03 -2.09 16 22 C -0.14 -2.70 8.65 71.98 0.62 -2.08 16 23 C -0.15 -3.30 9.02 71.98 0.65 -2.65 16 24 C -0.12 -3.18 8.70 22.27 0.19 -2.98 16 25 C -0.13 -2.97 9.67 22.27 0.22 -2.75 16 26 H 0.05 1.00 7.37 -2.38 -0.02 0.98 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.34 7.88 -2.39 -0.02 1.33 16 30 H 0.05 0.86 7.41 -2.39 -0.02 0.84 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.12 3.00 7.10 -2.91 -0.02 2.98 16 34 H 0.11 3.75 7.72 -2.91 -0.02 3.72 16 35 H 0.34 12.10 6.40 -89.70 -0.57 11.53 16 36 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 37 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.14 6.57 -2.39 -0.02 1.12 16 45 H 0.05 1.16 6.42 -2.39 -0.02 1.15 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.13 2.87 8.04 -2.91 -0.02 2.85 16 49 H 0.14 2.51 7.95 -2.91 -0.02 2.49 16 Total: -1.00 -65.30 385.15 4.41 -60.89 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.31 Total: 25.24 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 4.55 Total: -48.22 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.48 Total: -85.05 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.30 4.41 -60.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540342909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.303 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds