Wall clock time and date at job start Tue Mar 31 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46677 * 2 1 4 4 C 1.50698 * 109.47345 * 119.99581 * 2 1 3 5 5 C 1.38237 * 119.99680 * 120.00027 * 4 2 1 6 6 C 1.38233 * 119.99940 * 179.97438 * 5 4 2 7 7 C 1.38237 * 120.00033 * 359.95943 * 6 5 4 8 8 C 1.50697 * 120.00028 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47032 * 340.00817 * 8 7 6 10 10 N 1.46899 * 109.47534 * 220.00311 * 8 7 6 11 11 C 1.46892 * 111.00251 * 156.43374 * 10 8 7 12 12 C 1.52998 * 109.47427 * 185.48083 * 11 10 8 13 13 C 1.50698 * 109.47484 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99760 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99969 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99968 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47054 * 90.00110 * 17 15 13 19 19 H 1.48500 * 109.47021 * 210.00139 * 17 15 13 20 20 H 1.48499 * 109.47131 * 330.00019 * 17 15 13 21 21 C 1.53007 * 109.46942 * 100.00276 * 8 7 6 22 22 C 1.53002 * 109.46845 * 294.38209 * 21 8 7 23 23 C 1.52998 * 109.47127 * 54.38065 * 21 8 7 24 24 C 1.38231 * 119.99725 * 0.27771 * 7 6 5 25 25 C 1.38230 * 120.00334 * 299.98333 * 4 2 1 26 26 H 1.08995 * 109.47310 * 299.99631 * 1 2 3 27 27 H 1.08999 * 109.47244 * 60.00329 * 1 2 3 28 28 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47310 * 240.00369 * 2 1 3 30 30 H 1.08997 * 109.46594 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47015 * 299.99811 * 3 2 1 32 32 H 1.08995 * 109.46949 * 60.00148 * 3 2 1 33 33 H 1.08004 * 120.00281 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.99928 * 179.97438 * 6 5 4 35 35 H 1.00902 * 110.99821 * 280.39173 * 10 8 7 36 36 H 1.09000 * 109.47374 * 305.47856 * 11 10 8 37 37 H 1.08999 * 109.47710 * 65.47810 * 11 10 8 38 38 H 1.09000 * 109.46658 * 300.00211 * 12 11 10 39 39 H 1.09004 * 109.47342 * 59.99145 * 12 11 10 40 40 H 0.97005 * 119.99771 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46976 * 174.38588 * 21 8 7 42 42 H 1.09003 * 109.47331 * 65.92986 * 22 21 8 43 43 H 1.09006 * 109.46763 * 185.92936 * 22 21 8 44 44 H 1.09000 * 109.47304 * 305.92879 * 22 21 8 45 45 H 1.09001 * 109.47084 * 293.66433 * 23 21 8 46 46 H 1.08998 * 109.46899 * 53.65332 * 23 21 8 47 47 H 1.08992 * 109.47000 * 173.65774 * 23 21 8 48 48 H 1.08003 * 119.99848 * 179.72794 * 24 7 6 49 49 H 1.07997 * 119.99998 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8271 -1.8342 1.1036 6 6 3.2884 -2.4855 2.2323 7 6 2.9557 -2.0124 3.4878 8 6 3.4581 -2.7227 4.7183 9 1 3.7465 -3.7411 4.4576 10 7 2.3949 -2.7590 5.7313 11 6 2.6027 -3.8668 6.6732 12 6 1.4093 -3.9565 7.6264 13 6 1.6222 -5.0935 8.5924 14 1 2.5189 -5.6924 8.5321 15 6 0.6723 -5.3690 9.5530 16 7 0.8579 -6.3615 10.3956 17 14 -0.8782 -4.3325 9.6576 18 1 -1.9322 -4.9305 8.7991 19 1 -1.3511 -4.2897 11.0647 20 1 -0.5841 -2.9534 9.1921 21 6 4.6709 -1.9768 5.2783 22 6 5.8266 -2.0597 4.2790 23 6 4.3039 -0.5101 5.5130 24 6 2.1569 -0.8914 3.6146 25 6 1.6988 -0.2378 2.4860 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.0877 -2.2035 0.1227 34 1 3.9090 -3.3638 2.1332 35 1 2.3293 -1.8777 6.2183 36 1 2.6969 -4.8013 6.1201 37 1 3.5130 -3.6906 7.2464 38 1 1.3152 -3.0221 8.1796 39 1 0.4990 -4.1327 7.0534 40 1 0.1894 -6.5556 11.0712 41 1 4.9731 -2.4312 6.2218 42 1 5.5635 -1.5138 3.3730 43 1 6.7212 -1.6206 4.7209 44 1 6.0186 -3.1036 4.0314 45 1 4.1106 -0.0263 4.5556 46 1 3.4106 -0.4542 6.1351 47 1 5.1288 -0.0051 6.0154 48 1 1.8933 -0.5243 4.5955 49 1 1.0785 0.6407 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540342910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:09 Heat of formation + Delta-G solvation = -8.099201 kcal Electronic energy + Delta-G solvation = -23277.831951 eV Core-core repulsion = 20203.302450 eV Total energy + Delta-G solvation = -3074.529501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08499 -37.88420 -35.14422 -34.07464 -32.42367 -30.94046 -30.40091 -29.06235 -27.34819 -27.24960 -25.51422 -23.44211 -23.02305 -21.99386 -20.44082 -20.06512 -19.45936 -16.77220 -16.58465 -15.67272 -15.36381 -15.20949 -14.69713 -14.38102 -14.12671 -13.88865 -13.65322 -13.57690 -13.38985 -13.18062 -12.93833 -12.54840 -12.47177 -12.38376 -12.16470 -12.02583 -11.78704 -11.47914 -11.39013 -11.31501 -11.19159 -11.01566 -10.86340 -10.77940 -10.61152 -10.46141 -10.15971 -9.77068 -9.70780 -9.20815 -8.77230 -8.52066 -8.38267 -7.88078 -6.02919 -4.01040 1.44799 1.52924 3.34429 3.41023 3.46044 3.82781 4.47886 4.52785 4.57803 4.66762 4.86755 4.92287 5.00624 5.02555 5.09375 5.11926 5.26204 5.27233 5.31983 5.40306 5.49786 5.52372 5.61210 5.62314 5.66377 5.73488 5.77431 5.78423 5.87167 5.94419 6.01086 6.03440 6.04990 6.14546 6.16152 6.16926 6.27350 6.28887 6.37586 6.57228 6.68375 6.76865 6.80504 7.10784 7.18063 7.40894 7.62773 7.77099 7.92097 8.54789 9.01279 9.59773 11.10464 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.003566 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.177863 B = 7849.072075 C = 8775.434898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.054 4.054 8 C 0.126 3.874 9 H 0.084 0.916 10 N -0.685 5.685 11 C 0.074 3.926 12 C -0.008 4.008 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.094 4.094 25 C -0.119 4.119 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.335 0.665 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.012 0.988 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.121 0.879 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 15.428 -20.706 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.139 4.139 6 C -0.133 4.133 7 C -0.055 4.055 8 C 0.016 3.984 9 H 0.102 0.898 10 N -0.316 5.316 11 C -0.054 4.054 12 C -0.046 4.046 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.144 4.144 22 C -0.200 4.200 23 C -0.208 4.208 24 C -0.112 4.112 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.139 0.861 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.033 14.967 -20.928 26.217 hybrid contribution -0.101 0.645 0.785 1.021 sum 4.933 15.612 -20.143 25.958 Atomic orbital electron populations 1.21857 0.94474 1.02099 1.01719 1.20089 0.95871 0.95853 0.95527 1.21850 1.01108 0.95337 1.01735 1.19740 0.98450 0.96080 0.94432 1.20915 0.98904 0.95930 0.98161 1.20948 1.00511 0.99859 0.91946 1.19759 0.96676 0.95103 0.93965 1.20570 0.89244 0.98139 0.90462 0.89833 1.60762 1.44961 1.08038 1.17820 1.21981 0.98559 0.92175 0.92686 1.19520 0.94023 0.97039 0.94016 1.21078 1.06798 1.14211 1.13804 0.91152 1.25005 0.98228 0.94944 0.95259 1.69918 1.35613 1.29603 1.19237 0.86735 0.83679 0.81637 0.76959 1.20254 1.21541 1.18985 1.21772 0.96162 0.96809 0.99611 1.21793 0.97449 1.01606 0.99120 1.21989 1.01167 0.95794 1.01825 1.20970 0.96669 0.95179 0.98374 1.20899 1.00601 1.00188 0.91989 0.92415 0.92674 0.92476 0.90834 0.92660 0.92666 0.92458 0.86701 0.86516 0.84559 0.91807 0.95881 0.96942 0.96126 0.92755 0.90671 0.92464 0.93069 0.92773 0.91937 0.92547 0.92953 0.86114 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.01 37.16 0.33 -0.85 16 2 C -0.05 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.08 9.01 37.16 0.33 -0.74 16 4 C -0.09 -0.93 4.78 -104.63 -0.50 -1.43 16 5 C -0.12 -1.33 9.67 -39.58 -0.38 -1.71 16 6 C -0.11 -1.36 8.95 -39.58 -0.35 -1.71 16 7 C -0.05 -0.70 3.88 -104.63 -0.41 -1.11 16 8 C 0.13 1.76 2.08 -68.86 -0.14 1.61 16 9 H 0.08 1.21 7.60 -51.93 -0.39 0.82 16 10 N -0.69 -11.43 5.69 -107.96 -0.61 -12.04 16 11 C 0.07 1.49 5.44 -3.83 -0.02 1.47 16 12 C -0.01 -0.20 4.35 -27.89 -0.12 -0.32 16 13 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 17 Si 0.88 22.16 27.47 -169.99 -4.67 17.50 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 C -0.12 -1.52 2.78 -90.62 -0.25 -1.77 16 22 C -0.14 -1.51 8.77 37.16 0.33 -1.18 16 23 C -0.15 -1.70 7.75 37.16 0.29 -1.42 16 24 C -0.09 -1.18 7.10 -39.59 -0.28 -1.46 16 25 C -0.12 -1.35 8.71 -39.59 -0.34 -1.69 16 26 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 33 H 0.11 1.04 7.95 -52.48 -0.42 0.63 16 34 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 35 H 0.33 5.29 5.88 -39.29 -0.23 5.06 16 36 H 0.06 1.31 7.92 -51.93 -0.41 0.90 16 37 H 0.02 0.46 7.39 -51.93 -0.38 0.08 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 1.02 7.34 -51.93 -0.38 0.64 16 42 H 0.06 0.60 7.15 -51.93 -0.37 0.23 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 46 H 0.06 0.66 5.74 -51.93 -0.30 0.36 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.12 1.51 6.17 -52.48 -0.32 1.18 16 49 H 0.12 1.14 7.10 -52.49 -0.37 0.77 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -30.62 373.55 -9.93 -40.56 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.82 Total: 2.33 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -2.24 Total: -26.54 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.16 Total: -39.48 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.62 -9.93 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540342910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.459 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds