Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46677 * 2 1 4 4 C 1.50698 * 109.47345 * 119.99581 * 2 1 3 5 5 C 1.38237 * 119.99680 * 120.00027 * 4 2 1 6 6 C 1.38233 * 119.99940 * 179.97438 * 5 4 2 7 7 C 1.38237 * 120.00033 * 359.95943 * 6 5 4 8 8 C 1.50697 * 120.00028 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47032 * 340.00817 * 8 7 6 10 10 N 1.46899 * 109.47534 * 220.00311 * 8 7 6 11 11 C 1.46892 * 111.00251 * 156.43374 * 10 8 7 12 12 C 1.52998 * 109.47427 * 185.48083 * 11 10 8 13 13 C 1.50698 * 109.47484 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99760 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99969 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99968 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47054 * 90.00110 * 17 15 13 19 19 H 1.48500 * 109.47021 * 210.00139 * 17 15 13 20 20 H 1.48499 * 109.47131 * 330.00019 * 17 15 13 21 21 C 1.53007 * 109.46942 * 100.00276 * 8 7 6 22 22 C 1.53002 * 109.46845 * 294.38209 * 21 8 7 23 23 C 1.52998 * 109.47127 * 54.38065 * 21 8 7 24 24 C 1.38231 * 119.99725 * 0.27771 * 7 6 5 25 25 C 1.38230 * 120.00334 * 299.98333 * 4 2 1 26 26 H 1.08995 * 109.47310 * 299.99631 * 1 2 3 27 27 H 1.08999 * 109.47244 * 60.00329 * 1 2 3 28 28 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47310 * 240.00369 * 2 1 3 30 30 H 1.08997 * 109.46594 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47015 * 299.99811 * 3 2 1 32 32 H 1.08995 * 109.46949 * 60.00148 * 3 2 1 33 33 H 1.08004 * 120.00281 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.99928 * 179.97438 * 6 5 4 35 35 H 1.00902 * 110.99821 * 280.39173 * 10 8 7 36 36 H 1.09000 * 109.47374 * 305.47856 * 11 10 8 37 37 H 1.08999 * 109.47710 * 65.47810 * 11 10 8 38 38 H 1.09000 * 109.46658 * 300.00211 * 12 11 10 39 39 H 1.09004 * 109.47342 * 59.99145 * 12 11 10 40 40 H 0.97005 * 119.99771 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46976 * 174.38588 * 21 8 7 42 42 H 1.09003 * 109.47331 * 65.92986 * 22 21 8 43 43 H 1.09006 * 109.46763 * 185.92936 * 22 21 8 44 44 H 1.09000 * 109.47304 * 305.92879 * 22 21 8 45 45 H 1.09001 * 109.47084 * 293.66433 * 23 21 8 46 46 H 1.08998 * 109.46899 * 53.65332 * 23 21 8 47 47 H 1.08992 * 109.47000 * 173.65774 * 23 21 8 48 48 H 1.08003 * 119.99848 * 179.72794 * 24 7 6 49 49 H 1.07997 * 119.99998 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8271 -1.8342 1.1036 6 6 3.2884 -2.4855 2.2323 7 6 2.9557 -2.0124 3.4878 8 6 3.4581 -2.7227 4.7183 9 1 3.7465 -3.7411 4.4576 10 7 2.3949 -2.7590 5.7313 11 6 2.6027 -3.8668 6.6732 12 6 1.4093 -3.9565 7.6264 13 6 1.6222 -5.0935 8.5924 14 1 2.5189 -5.6924 8.5321 15 6 0.6723 -5.3690 9.5530 16 7 0.8579 -6.3615 10.3956 17 14 -0.8782 -4.3325 9.6576 18 1 -1.9322 -4.9305 8.7991 19 1 -1.3511 -4.2897 11.0647 20 1 -0.5841 -2.9534 9.1921 21 6 4.6709 -1.9768 5.2783 22 6 5.8266 -2.0597 4.2790 23 6 4.3039 -0.5101 5.5130 24 6 2.1569 -0.8914 3.6146 25 6 1.6988 -0.2378 2.4860 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.0877 -2.2035 0.1227 34 1 3.9090 -3.3638 2.1332 35 1 2.3293 -1.8777 6.2183 36 1 2.6969 -4.8013 6.1201 37 1 3.5130 -3.6906 7.2464 38 1 1.3152 -3.0221 8.1796 39 1 0.4990 -4.1327 7.0534 40 1 0.1894 -6.5556 11.0712 41 1 4.9731 -2.4312 6.2218 42 1 5.5635 -1.5138 3.3730 43 1 6.7212 -1.6206 4.7209 44 1 6.0186 -3.1036 4.0314 45 1 4.1106 -0.0263 4.5556 46 1 3.4106 -0.4542 6.1351 47 1 5.1288 -0.0051 6.0154 48 1 1.8933 -0.5243 4.5955 49 1 1.0785 0.6407 2.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540342910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = -23.746277 kcal Electronic energy + Delta-G solvation = -23278.510459 eV Core-core repulsion = 20203.302450 eV Total energy + Delta-G solvation = -3075.208009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02732 -38.89459 -36.26837 -35.43680 -34.29520 -31.92075 -31.68791 -30.39788 -28.15259 -27.93730 -26.93395 -24.98651 -23.89859 -22.91641 -22.23400 -20.92789 -20.44384 -18.95813 -17.64136 -16.69307 -16.43593 -16.19823 -16.09178 -15.81884 -15.29316 -14.96794 -14.75027 -14.60718 -14.53242 -14.32240 -14.05894 -13.96923 -13.43283 -13.28434 -13.20802 -13.03747 -12.95077 -12.79301 -12.71846 -12.39002 -12.09789 -11.98403 -11.90551 -11.84112 -11.78070 -11.71306 -11.56881 -11.41851 -11.39985 -11.21714 -10.77823 -9.66412 -9.36388 -9.16897 -8.30772 -6.35086 0.55198 0.63892 1.36672 1.37432 1.50365 2.35931 2.91392 3.04960 3.33890 3.77877 3.87195 3.91086 3.97019 4.05696 4.24926 4.29205 4.30327 4.38084 4.43195 4.51725 4.60174 4.62391 4.67798 4.75303 4.79798 4.84471 4.85805 4.96250 4.96684 5.01212 5.03038 5.04254 5.11962 5.18814 5.23515 5.27326 5.29420 5.36658 5.40437 5.42288 5.42767 5.49461 5.62071 5.66837 5.82592 5.85606 6.17884 6.23921 6.26920 6.52634 6.73470 7.29864 8.85959 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.003566 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.177863 B = 7849.072075 C = 8775.434898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.086 4.086 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.067 4.067 8 C 0.129 3.871 9 H 0.073 0.927 10 N -0.685 5.685 11 C 0.089 3.911 12 C -0.001 4.001 13 C -0.533 4.533 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.951 5.951 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.247 1.247 21 C -0.121 4.121 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.105 4.105 25 C -0.124 4.124 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.341 0.659 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.118 0.882 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 17.727 -22.670 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.140 4.140 7 C -0.068 4.068 8 C 0.019 3.981 9 H 0.091 0.909 10 N -0.317 5.317 11 C -0.040 4.040 12 C -0.039 4.039 13 C -0.571 4.571 14 H 0.050 0.950 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.141 4.141 22 C -0.193 4.193 23 C -0.203 4.203 24 C -0.123 4.123 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.339 17.282 -22.913 29.025 hybrid contribution 0.187 -0.115 1.337 1.355 sum 4.527 17.166 -21.575 27.940 Atomic orbital electron populations 1.21850 0.94206 1.01653 1.02350 1.20140 0.96023 0.96344 0.94746 1.21830 1.00941 0.94660 1.02357 1.20046 0.97661 0.95850 0.95096 1.21186 0.98578 0.95868 0.98724 1.21102 1.00752 1.00249 0.91914 1.19652 0.97813 0.95645 0.93693 1.20550 0.89139 0.98161 0.90202 0.90881 1.60658 1.46534 1.07247 1.17211 1.21616 0.96622 0.93231 0.92485 1.19399 0.95521 0.95242 0.93771 1.21411 1.05534 1.15154 1.15029 0.94974 1.25989 1.02107 0.96284 0.94743 1.70065 1.37212 1.31628 1.20250 0.85607 0.78866 0.80465 0.77362 1.19421 1.20839 1.17058 1.21711 0.96090 0.97139 0.99155 1.21734 0.97013 1.01854 0.98742 1.21942 1.01233 0.95038 1.02042 1.21023 0.97073 0.95408 0.98788 1.21076 1.00610 1.00530 0.91928 0.92744 0.91141 0.93441 0.89945 0.92898 0.91277 0.92652 0.84786 0.85798 0.83851 0.92860 0.96274 0.96317 0.96330 0.92435 0.92344 0.92100 0.92110 0.92711 0.91491 0.93102 0.92031 0.86412 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.01 71.98 0.65 -1.37 16 2 C -0.05 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -1.75 9.01 71.99 0.65 -1.10 16 4 C -0.09 -1.66 4.78 -19.87 -0.09 -1.76 16 5 C -0.13 -2.50 9.67 22.27 0.22 -2.28 16 6 C -0.12 -2.74 8.95 22.27 0.20 -2.54 16 7 C -0.07 -1.68 3.88 -19.87 -0.08 -1.76 16 8 C 0.13 3.55 2.08 44.17 0.09 3.64 16 9 H 0.07 2.14 7.60 -2.39 -0.02 2.12 16 10 N -0.69 -22.59 5.69 -495.47 -2.82 -25.42 16 11 C 0.09 3.63 5.44 86.30 0.47 4.10 16 12 C 0.00 -0.07 4.35 29.85 0.13 0.06 16 13 C -0.53 -31.49 9.66 25.60 0.25 -31.24 16 14 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 15 C 0.01 0.33 5.47 84.66 0.46 0.80 16 16 N -0.95 -60.62 13.96 21.45 0.30 -60.33 16 17 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 21 C -0.12 -2.90 2.78 -10.79 -0.03 -2.93 16 22 C -0.14 -2.73 8.77 71.98 0.63 -2.10 16 23 C -0.15 -3.12 7.75 71.98 0.56 -2.56 16 24 C -0.10 -2.50 7.10 22.27 0.16 -2.34 16 25 C -0.12 -2.59 8.71 22.27 0.19 -2.39 16 26 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 29 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.71 7.39 -2.39 -0.02 0.69 16 33 H 0.13 2.09 7.95 -2.91 -0.02 2.07 16 34 H 0.12 2.52 8.04 -2.91 -0.02 2.49 16 35 H 0.34 10.52 5.88 -89.69 -0.53 9.99 16 36 H 0.05 2.25 7.92 -2.39 -0.02 2.23 16 37 H 0.02 0.78 7.39 -2.39 -0.02 0.76 16 38 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 39 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 40 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 41 H 0.06 1.59 7.34 -2.39 -0.02 1.58 16 42 H 0.06 1.19 7.15 -2.39 -0.02 1.17 16 43 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.38 6.19 -2.39 -0.01 1.37 16 46 H 0.05 1.13 5.74 -2.39 -0.01 1.12 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 2.82 6.17 -2.91 -0.02 2.80 16 49 H 0.13 2.28 7.10 -2.91 -0.02 2.26 16 Total: -1.00 -66.07 373.55 4.09 -61.98 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.32 Total: 23.00 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.42 Total: -46.58 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.52 Total: -85.74 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -66.07 4.09 -61.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540342910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.233 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds