Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46687 * 2 1 4 4 C 1.50697 * 109.47058 * 119.99685 * 2 1 3 5 5 C 1.38239 * 119.99447 * 120.00153 * 4 2 1 6 6 C 1.38236 * 119.99798 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99742 * 179.69833 * 7 6 5 9 9 C 1.53000 * 109.47356 * 89.99720 * 8 7 6 10 10 N 1.46905 * 109.47346 * 174.79191 * 9 8 7 11 11 C 1.46897 * 110.99581 * 75.92256 * 10 9 8 12 12 C 1.50705 * 109.47071 * 190.00005 * 11 10 9 13 13 H 1.07995 * 119.99498 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99881 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00104 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99463 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47087 * 90.00201 * 16 14 12 18 18 H 1.48504 * 109.46735 * 209.99529 * 16 14 12 19 19 H 1.48491 * 109.47305 * 329.99710 * 16 14 12 20 20 C 1.46902 * 110.99908 * 199.87331 * 10 9 8 21 21 C 1.52993 * 109.47371 * 309.19101 * 20 10 9 22 22 C 1.53000 * 109.46875 * 69.19000 * 20 10 9 23 23 C 1.38231 * 119.99954 * 359.97129 * 7 6 5 24 24 C 1.38231 * 120.00387 * 300.02553 * 4 2 1 25 25 H 1.09000 * 109.47427 * 299.99720 * 1 2 3 26 26 H 1.08993 * 109.47595 * 59.99889 * 1 2 3 27 27 H 1.09006 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46959 * 240.00027 * 2 1 3 29 29 H 1.08998 * 109.46700 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46957 * 299.99912 * 3 2 1 31 31 H 1.09000 * 109.47399 * 60.00297 * 3 2 1 32 32 H 1.08002 * 120.00314 * 359.97438 * 5 4 2 33 33 H 1.07998 * 120.00119 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47048 * 209.99501 * 8 7 6 35 35 H 1.08998 * 109.47765 * 329.99767 * 8 7 6 36 36 H 1.08999 * 109.47465 * 294.79709 * 9 8 7 37 37 H 1.09005 * 109.46920 * 54.79449 * 9 8 7 38 38 H 1.09000 * 109.47480 * 310.00132 * 11 10 9 39 39 H 1.09003 * 109.47254 * 70.00145 * 11 10 9 40 40 H 0.97000 * 119.99826 * 180.02562 * 15 14 12 41 41 H 1.08993 * 109.46750 * 189.18629 * 20 10 9 42 42 H 1.08993 * 109.47570 * 60.00030 * 21 20 10 43 43 H 1.09000 * 109.47016 * 180.02562 * 21 20 10 44 44 H 1.09006 * 109.47146 * 299.99908 * 21 20 10 45 45 H 1.09002 * 109.47188 * 54.42190 * 22 20 10 46 46 H 1.09004 * 109.47266 * 174.42414 * 22 20 10 47 47 H 1.09006 * 109.47409 * 294.42400 * 22 20 10 48 48 H 1.08001 * 120.00250 * 179.97438 * 23 7 6 49 49 H 1.08000 * 119.99704 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -1.8343 1.1036 6 6 3.2875 -2.4862 2.2323 7 6 2.9526 -2.0146 3.4878 8 6 3.4489 -2.7293 4.7182 9 6 4.7984 -2.1436 5.1388 10 7 5.2229 -2.7528 6.4064 11 6 5.7238 -4.1171 6.1930 12 6 5.9174 -4.7952 7.5249 13 1 5.6913 -4.2654 8.4384 14 6 6.3841 -6.0916 7.5770 15 7 6.6599 -6.7364 6.4646 16 14 6.6247 -6.9317 9.2280 17 1 5.3726 -7.6302 9.6151 18 1 7.7301 -7.9181 9.1249 19 1 6.9626 -5.9151 10.2562 20 6 6.2302 -1.9213 7.0787 21 6 7.3497 -1.5798 6.0935 22 6 5.5765 -0.6301 7.5753 23 6 2.1580 -0.8906 3.6147 24 6 1.6980 -0.2384 2.4860 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.0877 -2.2035 0.1227 33 1 3.9080 -3.3645 2.1332 34 1 2.7296 -2.6020 5.5273 35 1 3.5658 -3.7907 4.4996 36 1 5.5410 -2.3524 4.3687 37 1 4.7022 -1.0656 5.2680 38 1 5.0032 -4.6802 5.5999 39 1 6.6762 -4.0760 5.6644 40 1 6.9879 -7.6486 6.5013 41 1 6.6454 -2.4674 7.9256 42 1 6.9345 -1.0337 5.2466 43 1 8.0973 -0.9632 6.5925 44 1 7.8154 -2.4997 5.7396 45 1 4.7167 -0.8748 8.1990 46 1 6.2982 -0.0588 8.1593 47 1 5.2490 -0.0369 6.7215 48 1 1.8960 -0.5223 4.5956 49 1 1.0771 0.6397 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546660911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = -3.002218 kcal Electronic energy + Delta-G solvation = -23075.378057 eV Core-core repulsion = 20001.069578 eV Total energy + Delta-G solvation = -3074.308479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.63227 -37.82268 -35.77803 -32.76345 -32.52572 -30.81308 -30.31649 -28.03149 -27.33512 -26.57837 -25.88296 -23.40168 -22.68167 -22.07118 -21.25423 -19.83218 -18.54346 -16.44013 -16.18510 -15.54589 -15.25462 -14.96523 -14.41379 -14.13464 -14.09469 -13.72535 -13.60807 -13.55160 -13.20134 -12.93494 -12.73132 -12.56638 -12.26732 -12.04771 -11.80353 -11.77376 -11.45736 -11.33825 -11.28175 -11.08287 -11.00890 -10.86113 -10.66668 -10.65360 -10.58895 -10.44124 -10.15808 -9.93511 -9.57955 -9.12421 -8.77289 -8.40081 -8.31089 -7.14069 -5.99930 -4.00300 1.48649 1.55016 3.33404 3.39438 3.42872 3.87874 4.44749 4.56404 4.67073 4.87561 5.02485 5.07606 5.13568 5.29893 5.33818 5.37051 5.41243 5.50126 5.57025 5.62110 5.62226 5.70421 5.75917 5.77895 5.80949 5.95851 6.02985 6.03913 6.05435 6.08441 6.12846 6.19812 6.20954 6.33235 6.35832 6.44055 6.56567 6.60763 6.71275 6.73006 6.82867 6.91826 6.96977 7.17863 7.38201 7.46918 7.85223 8.16614 8.29509 8.61795 9.07696 9.63524 11.10905 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.003196 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.397750 B = 8759.287492 C = 9387.670295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.091 4.091 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.069 4.069 8 C -0.078 4.078 9 C 0.064 3.936 10 N -0.531 5.531 11 C 0.191 3.809 12 C -0.504 4.504 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.081 3.919 21 C -0.180 4.180 22 C -0.140 4.140 23 C -0.116 4.116 24 C -0.115 4.115 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.030 0.970 39 H -0.007 1.007 40 H 0.260 0.740 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.120 0.880 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 14.730 -10.915 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.091 4.091 5 C -0.135 4.135 6 C -0.132 4.132 7 C -0.070 4.070 8 C -0.116 4.116 9 C -0.064 4.064 10 N -0.255 5.255 11 C 0.065 3.935 12 C -0.543 4.543 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.028 4.028 21 C -0.239 4.239 22 C -0.197 4.197 23 C -0.134 4.134 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.138 0.862 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.097 14.520 -10.662 20.181 hybrid contribution 0.956 -0.627 0.246 1.169 sum -8.141 13.893 -10.416 19.177 Atomic orbital electron populations 1.21852 0.94561 1.01971 1.01673 1.20088 0.95773 0.95922 0.95570 1.21853 1.01281 0.95262 1.01670 1.19753 0.98739 0.96198 0.94453 1.21004 0.98439 0.95715 0.98376 1.21131 0.99919 1.00178 0.92012 1.20081 0.96349 0.95338 0.95227 1.20636 0.97633 0.99605 0.93724 1.21943 0.94526 0.97952 0.91992 1.62303 1.38971 1.04112 1.20128 1.19764 0.93746 0.82831 0.97113 1.21179 1.42565 0.97747 0.92814 0.91960 1.24974 0.95781 0.97398 0.96465 1.69955 1.45710 1.11830 1.26382 0.86545 0.77687 0.79302 0.84153 1.20687 1.21407 1.19905 1.21575 0.90412 0.93394 0.97415 1.22438 0.99856 1.01470 1.00098 1.21857 1.00603 0.96969 1.00310 1.21061 0.98250 0.95648 0.98438 1.20878 1.00566 0.99901 0.91996 0.92494 0.92653 0.92554 0.90754 0.92550 0.92650 0.92492 0.86565 0.86033 0.90457 0.90653 0.95650 0.92145 0.95184 0.98892 0.93023 0.89011 0.93527 0.93407 0.92154 0.92242 0.93447 0.93698 0.86172 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.01 37.16 0.33 -0.82 16 2 C -0.06 -0.50 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.16 9.01 37.16 0.33 -0.83 16 4 C -0.09 -1.05 4.78 -104.63 -0.50 -1.55 16 5 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 6 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 7 C -0.07 -1.02 5.13 -104.63 -0.54 -1.56 16 8 C -0.08 -1.32 5.38 -27.89 -0.15 -1.47 16 9 C 0.06 1.17 3.50 -3.82 -0.01 1.15 16 10 N -0.53 -11.23 4.35 -228.08 -0.99 -12.22 16 11 C 0.19 4.88 4.45 -4.97 -0.02 4.85 16 12 C -0.50 -14.03 8.32 -34.44 -0.29 -14.31 16 13 H 0.06 1.72 7.22 -52.49 -0.38 1.34 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.08 1.56 2.76 -67.72 -0.19 1.37 16 21 C -0.18 -3.20 8.49 37.15 0.32 -2.88 16 22 C -0.14 -2.21 9.11 37.16 0.34 -1.87 16 23 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 24 C -0.12 -1.35 8.71 -39.58 -0.34 -1.70 16 25 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 32 H 0.12 1.22 7.95 -52.49 -0.42 0.81 16 33 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.07 1.41 6.91 -51.93 -0.36 1.05 16 36 H 0.03 0.48 7.34 -51.93 -0.38 0.10 16 37 H 0.06 1.01 6.02 -51.93 -0.31 0.70 16 38 H 0.03 0.82 6.73 -51.93 -0.35 0.47 16 39 H -0.01 -0.18 6.57 -51.93 -0.34 -0.52 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.09 1.98 6.61 -51.93 -0.34 1.64 16 42 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.21 6.71 -51.93 -0.35 0.86 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 49 H 0.12 1.13 7.10 -52.49 -0.37 0.76 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -29.17 379.33 -10.64 -39.81 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.83 Total: 0.62 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.25 Total: -24.70 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.26 Total: -38.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.17 -10.64 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546660911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.811 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds