Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46687 * 2 1 4 4 C 1.50697 * 109.47058 * 119.99685 * 2 1 3 5 5 C 1.38239 * 119.99447 * 120.00153 * 4 2 1 6 6 C 1.38236 * 119.99798 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99742 * 179.69833 * 7 6 5 9 9 C 1.53000 * 109.47356 * 89.99720 * 8 7 6 10 10 N 1.46905 * 109.47346 * 174.79191 * 9 8 7 11 11 C 1.46897 * 110.99581 * 75.92256 * 10 9 8 12 12 C 1.50705 * 109.47071 * 190.00005 * 11 10 9 13 13 H 1.07995 * 119.99498 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99881 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00104 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99463 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47087 * 90.00201 * 16 14 12 18 18 H 1.48504 * 109.46735 * 209.99529 * 16 14 12 19 19 H 1.48491 * 109.47305 * 329.99710 * 16 14 12 20 20 C 1.46902 * 110.99908 * 199.87331 * 10 9 8 21 21 C 1.52993 * 109.47371 * 309.19101 * 20 10 9 22 22 C 1.53000 * 109.46875 * 69.19000 * 20 10 9 23 23 C 1.38231 * 119.99954 * 359.97129 * 7 6 5 24 24 C 1.38231 * 120.00387 * 300.02553 * 4 2 1 25 25 H 1.09000 * 109.47427 * 299.99720 * 1 2 3 26 26 H 1.08993 * 109.47595 * 59.99889 * 1 2 3 27 27 H 1.09006 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46959 * 240.00027 * 2 1 3 29 29 H 1.08998 * 109.46700 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46957 * 299.99912 * 3 2 1 31 31 H 1.09000 * 109.47399 * 60.00297 * 3 2 1 32 32 H 1.08002 * 120.00314 * 359.97438 * 5 4 2 33 33 H 1.07998 * 120.00119 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47048 * 209.99501 * 8 7 6 35 35 H 1.08998 * 109.47765 * 329.99767 * 8 7 6 36 36 H 1.08999 * 109.47465 * 294.79709 * 9 8 7 37 37 H 1.09005 * 109.46920 * 54.79449 * 9 8 7 38 38 H 1.09000 * 109.47480 * 310.00132 * 11 10 9 39 39 H 1.09003 * 109.47254 * 70.00145 * 11 10 9 40 40 H 0.97000 * 119.99826 * 180.02562 * 15 14 12 41 41 H 1.08993 * 109.46750 * 189.18629 * 20 10 9 42 42 H 1.08993 * 109.47570 * 60.00030 * 21 20 10 43 43 H 1.09000 * 109.47016 * 180.02562 * 21 20 10 44 44 H 1.09006 * 109.47146 * 299.99908 * 21 20 10 45 45 H 1.09002 * 109.47188 * 54.42190 * 22 20 10 46 46 H 1.09004 * 109.47266 * 174.42414 * 22 20 10 47 47 H 1.09006 * 109.47409 * 294.42400 * 22 20 10 48 48 H 1.08001 * 120.00250 * 179.97438 * 23 7 6 49 49 H 1.08000 * 119.99704 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -1.8343 1.1036 6 6 3.2875 -2.4862 2.2323 7 6 2.9526 -2.0146 3.4878 8 6 3.4489 -2.7293 4.7182 9 6 4.7984 -2.1436 5.1388 10 7 5.2229 -2.7528 6.4064 11 6 5.7238 -4.1171 6.1930 12 6 5.9174 -4.7952 7.5249 13 1 5.6913 -4.2654 8.4384 14 6 6.3841 -6.0916 7.5770 15 7 6.6599 -6.7364 6.4646 16 14 6.6247 -6.9317 9.2280 17 1 5.3726 -7.6302 9.6151 18 1 7.7301 -7.9181 9.1249 19 1 6.9626 -5.9151 10.2562 20 6 6.2302 -1.9213 7.0787 21 6 7.3497 -1.5798 6.0935 22 6 5.5765 -0.6301 7.5753 23 6 2.1580 -0.8906 3.6147 24 6 1.6980 -0.2384 2.4860 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.0877 -2.2035 0.1227 33 1 3.9080 -3.3645 2.1332 34 1 2.7296 -2.6020 5.5273 35 1 3.5658 -3.7907 4.4996 36 1 5.5410 -2.3524 4.3687 37 1 4.7022 -1.0656 5.2680 38 1 5.0032 -4.6802 5.5999 39 1 6.6762 -4.0760 5.6644 40 1 6.9879 -7.6486 6.5013 41 1 6.6454 -2.4674 7.9256 42 1 6.9345 -1.0337 5.2466 43 1 8.0973 -0.9632 6.5925 44 1 7.8154 -2.4997 5.7396 45 1 4.7167 -0.8748 8.1990 46 1 6.2982 -0.0588 8.1593 47 1 5.2490 -0.0369 6.7215 48 1 1.8960 -0.5223 4.5956 49 1 1.0771 0.6397 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546660911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -16.838807 kcal Electronic energy + Delta-G solvation = -23075.978056 eV Core-core repulsion = 20001.069578 eV Total energy + Delta-G solvation = -3074.908478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65806 -39.39662 -36.69435 -34.89057 -33.76160 -31.96413 -31.71959 -29.56089 -27.99030 -27.93603 -27.54464 -24.81264 -24.03469 -23.55166 -22.39206 -20.73615 -20.19453 -18.36513 -17.41802 -16.92338 -16.63164 -16.23186 -15.95537 -15.65342 -15.31369 -14.81371 -14.72197 -14.43306 -14.36599 -14.33150 -14.05655 -13.96850 -13.53537 -13.27409 -13.08526 -12.97818 -12.90539 -12.61473 -12.58974 -12.50681 -12.40172 -12.26600 -12.10134 -11.94992 -11.83179 -11.65618 -11.48264 -11.46174 -11.31921 -11.07451 -10.58474 -9.78380 -9.36871 -8.90807 -8.18791 -6.27682 0.45818 0.53864 1.39857 1.41306 1.52139 2.40460 2.84911 3.13573 3.32350 3.78488 3.86698 4.03276 4.11393 4.18175 4.18908 4.28375 4.32423 4.36843 4.51460 4.55619 4.57713 4.61762 4.67016 4.70565 4.80090 4.84160 4.85289 4.93482 4.98857 5.00455 5.03310 5.08851 5.11593 5.20511 5.24640 5.26638 5.28532 5.31880 5.38285 5.43111 5.45776 5.55604 5.59664 5.69289 5.78084 5.82766 6.11142 6.16608 6.45318 6.72038 6.89719 7.41449 8.92241 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.003196 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.397750 B = 8759.287492 C = 9387.670295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.142 4.142 4 C -0.087 4.087 5 C -0.123 4.123 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.067 4.067 9 C 0.072 3.928 10 N -0.536 5.536 11 C 0.210 3.790 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.074 3.926 21 C -0.171 4.171 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.010 0.990 37 H 0.084 0.916 38 H 0.002 0.998 39 H -0.037 1.037 40 H 0.263 0.737 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.132 0.868 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 17.268 -10.814 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.087 4.087 5 C -0.141 4.141 6 C -0.150 4.150 7 C -0.089 4.089 8 C -0.105 4.105 9 C -0.056 4.056 10 N -0.260 5.260 11 C 0.083 3.917 12 C -0.556 4.556 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.790 3.210 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.035 4.035 21 C -0.229 4.229 22 C -0.186 4.186 23 C -0.137 4.137 24 C -0.131 4.131 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.102 0.898 38 H 0.020 0.980 39 H -0.019 1.019 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.150 0.850 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.198 17.082 -10.560 22.523 hybrid contribution 1.275 -1.365 0.129 1.873 sum -8.922 15.716 -10.431 20.867 Atomic orbital electron populations 1.21843 0.93578 1.01800 1.02666 1.20157 0.96505 0.96301 0.94377 1.21843 1.00782 0.94591 1.02669 1.20120 0.97403 0.95466 0.95663 1.21218 0.98454 0.96030 0.98408 1.21160 1.00637 1.00410 0.92797 1.19894 0.98200 0.96574 0.94190 1.20447 0.97049 0.98043 0.94997 1.21954 0.94590 0.98956 0.90096 1.62265 1.39318 1.02687 1.21737 1.19351 0.91448 0.85332 0.95546 1.21475 1.42477 0.98251 0.93437 0.92054 1.25888 0.95346 0.98138 1.00356 1.70091 1.46510 1.12237 1.28771 0.85437 0.77802 0.78222 0.79497 1.19956 1.20886 1.18804 1.21674 0.90776 0.94445 0.96594 1.22333 0.99894 1.00360 1.00350 1.21753 1.00774 0.95015 1.01010 1.21210 0.97715 0.94999 0.99733 1.21160 1.00174 1.00298 0.91460 0.92208 0.91016 0.93323 0.90222 0.93341 0.91019 0.92193 0.84966 0.87349 0.90545 0.93762 0.97177 0.89791 0.98027 1.01919 0.92851 0.91884 0.92231 0.90789 0.95571 0.92617 0.90993 0.92188 0.84968 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.01 71.98 0.65 -1.22 16 2 C -0.05 -0.84 3.09 -11.54 -0.04 -0.88 16 3 C -0.14 -1.87 9.01 71.98 0.65 -1.23 16 4 C -0.09 -1.82 4.78 -19.87 -0.09 -1.91 16 5 C -0.12 -2.98 9.67 22.27 0.22 -2.77 16 6 C -0.13 -3.87 9.70 22.27 0.22 -3.65 16 7 C -0.09 -2.64 5.13 -19.87 -0.10 -2.74 16 8 C -0.07 -2.39 5.38 29.85 0.16 -2.23 16 9 C 0.07 2.67 3.50 86.30 0.30 2.98 16 10 N -0.54 -23.41 4.35 -875.51 -3.81 -27.22 16 11 C 0.21 11.38 4.45 85.56 0.38 11.76 16 12 C -0.52 -29.85 8.32 25.60 0.21 -29.64 16 13 H 0.06 3.47 7.22 -2.91 -0.02 3.45 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 16 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 C 0.07 2.84 2.76 44.91 0.12 2.96 16 21 C -0.17 -6.06 8.49 71.98 0.61 -5.45 16 22 C -0.13 -3.76 9.11 71.98 0.66 -3.11 16 23 C -0.12 -2.97 9.70 22.27 0.22 -2.75 16 24 C -0.11 -2.39 8.71 22.27 0.19 -2.20 16 25 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 32 H 0.13 2.68 7.95 -2.91 -0.02 2.65 16 33 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.08 2.66 8.08 -2.39 -0.02 2.64 16 35 H 0.04 1.80 6.91 -2.39 -0.02 1.79 16 36 H 0.01 0.40 7.34 -2.39 -0.02 0.38 16 37 H 0.08 2.71 6.02 -2.38 -0.01 2.70 16 38 H 0.00 0.10 6.73 -2.39 -0.02 0.08 16 39 H -0.04 -2.18 6.57 -2.39 -0.02 -2.20 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.06 2.78 6.61 -2.39 -0.02 2.76 16 42 H 0.06 1.93 6.66 -2.39 -0.02 1.92 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.03 1.08 6.71 -2.38 -0.02 1.06 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.58 6.59 -2.38 -0.02 1.57 16 48 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 49 H 0.14 2.26 7.10 -2.91 -0.02 2.24 16 Total: -1.00 -65.33 379.33 4.20 -61.13 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.89 Total: 17.66 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 4.81 Total: -41.58 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.52 Total: -84.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.33 4.20 -61.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546660911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.287 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds