Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 C 1.53005 * 109.47080 * 119.99544 * 2 1 3 5 5 C 1.50701 * 109.46691 * 65.00236 * 4 2 1 6 6 C 1.38255 * 120.00219 * 90.00135 * 5 4 2 7 7 C 1.38212 * 120.00284 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38215 * 120.00294 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00248 * 179.70563 * 9 8 7 11 11 H 1.08994 * 109.46875 * 160.00370 * 10 9 8 12 12 C 1.53001 * 109.46861 * 279.99771 * 10 9 8 13 13 N 1.46889 * 109.47161 * 39.99698 * 10 9 8 14 14 C 1.46899 * 111.00018 * 155.00339 * 13 10 9 15 15 C 1.53000 * 109.47270 * 180.02562 * 14 13 10 16 16 C 1.53003 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47712 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00100 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99838 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99899 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47179 * 90.00096 * 21 19 17 23 23 H 1.48505 * 109.46466 * 209.99853 * 21 19 17 24 24 H 1.48500 * 109.47249 * 329.99877 * 21 19 17 25 25 C 1.38217 * 120.00041 * 269.99352 * 5 4 2 26 26 H 1.09002 * 109.47737 * 300.00389 * 1 2 3 27 27 H 1.09008 * 109.47301 * 60.00164 * 1 2 3 28 28 H 1.08998 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47563 * 239.99821 * 2 1 3 30 30 H 1.09003 * 109.47513 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46886 * 300.00091 * 3 2 1 32 32 H 1.09002 * 109.47629 * 59.99366 * 3 2 1 33 33 H 1.08998 * 109.46843 * 305.00305 * 4 2 1 34 34 H 1.08993 * 109.47093 * 185.00092 * 4 2 1 35 35 H 1.08000 * 119.99755 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.99776 * 179.97438 * 7 6 5 37 37 H 1.08000 * 120.00399 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47159 * 300.00374 * 12 10 9 39 39 H 1.09005 * 109.46972 * 59.99874 * 12 10 9 40 40 H 1.08994 * 109.47105 * 180.02562 * 12 10 9 41 41 H 1.00901 * 111.00522 * 278.95329 * 13 10 9 42 42 H 1.08998 * 109.46948 * 299.99813 * 14 13 10 43 43 H 1.08992 * 109.47236 * 59.99955 * 14 13 10 44 44 H 1.09006 * 109.46970 * 300.00046 * 15 14 13 45 45 H 1.08999 * 109.47372 * 60.00027 * 15 14 13 46 46 H 1.09000 * 109.46985 * 300.00510 * 16 15 14 47 47 H 1.09003 * 109.46996 * 59.99270 * 16 15 14 48 48 H 0.96995 * 119.99501 * 180.02562 * 20 19 17 49 49 H 1.08001 * 119.99701 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1732 1.1890 6 6 2.4815 -3.0967 0.5951 7 6 2.1156 -4.4284 0.5393 8 6 0.9091 -4.8369 1.0768 9 6 0.0691 -3.9137 1.6705 10 6 -1.2490 -4.3579 2.2506 11 1 -1.6010 -3.6134 2.9645 12 6 -2.2751 -4.5114 1.1261 13 7 -1.0741 -5.6468 2.9331 14 6 -2.0934 -5.8337 3.9743 15 6 -1.8787 -7.1836 4.6617 16 6 -2.9399 -7.3781 5.7466 17 6 -2.7289 -8.7080 6.4233 18 1 -1.9191 -9.3504 6.1106 19 6 -3.5696 -9.1044 7.4416 20 7 -3.3857 -10.2652 8.0318 21 14 -4.9708 -7.9934 7.9819 22 1 -6.1867 -8.3095 7.1901 23 1 -5.2484 -8.2129 9.4242 24 1 -4.5911 -6.5749 7.7611 25 6 0.4357 -2.5819 1.7275 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1262 -0.6442 1.2953 35 1 3.4234 -2.7774 0.1741 36 1 2.7718 -5.1496 0.0749 37 1 0.6230 -5.8773 1.0328 38 1 -2.4048 -3.5551 0.6196 39 1 -1.9230 -5.2559 0.4120 40 1 -3.2285 -4.8323 1.5457 41 1 -1.0870 -6.4101 2.2734 42 1 -2.0114 -5.0343 4.7107 43 1 -3.0843 -5.8100 3.5210 44 1 -1.9603 -7.9833 3.9255 45 1 -0.8877 -7.2070 5.1151 46 1 -2.8579 -6.5784 6.4826 47 1 -3.9311 -7.3545 5.2936 48 1 -3.9774 -10.5443 8.7479 49 1 -0.2208 -1.8604 2.1911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552047114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -16.454762 kcal Electronic energy + Delta-G solvation = -22347.463558 eV Core-core repulsion = 19272.571733 eV Total energy + Delta-G solvation = -3074.891825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91014 -37.46659 -36.12610 -34.07406 -32.28637 -31.40305 -30.62524 -28.92574 -27.46053 -26.69771 -26.16055 -23.65374 -22.35099 -21.89737 -20.80534 -20.17566 -19.43671 -16.88615 -16.57155 -15.88814 -15.50173 -15.15102 -14.94878 -14.61870 -14.37046 -14.11255 -14.03194 -13.58216 -13.42595 -13.12037 -12.71986 -12.69467 -12.48782 -12.35907 -12.24183 -12.04632 -11.95591 -11.70419 -11.64829 -11.38580 -11.12945 -10.99016 -10.95470 -10.77974 -10.77031 -10.71527 -9.93395 -9.72187 -9.56307 -9.15003 -8.80783 -8.59853 -8.51251 -8.21261 -6.01547 -3.99117 1.35083 1.37199 3.31833 3.39205 3.43247 3.69562 4.27887 4.47363 4.51997 4.55697 4.65975 4.74155 4.87292 4.97689 5.08630 5.10980 5.17243 5.25875 5.32276 5.32988 5.34977 5.43157 5.49780 5.52183 5.58161 5.60825 5.62820 5.70569 5.75338 5.79274 5.84120 5.96386 5.98975 6.01306 6.06360 6.10769 6.20061 6.46798 6.49880 6.56443 6.59198 6.68756 6.93795 6.99250 7.24375 7.38018 7.46108 7.57324 7.83127 8.57890 9.04157 9.61088 11.12039 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.002483 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.717858 B =11274.502968 C =11667.879994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.102 4.102 9 C -0.058 4.058 10 C 0.119 3.881 11 H 0.083 0.917 12 C -0.177 4.177 13 N -0.682 5.682 14 C 0.057 3.943 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.339 0.661 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.008 0.992 48 H 0.262 0.738 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 21.677 -19.427 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.113 4.113 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.120 4.120 9 C -0.059 4.059 10 C 0.009 3.991 11 H 0.102 0.898 12 C -0.235 4.235 13 N -0.312 5.312 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.131 4.131 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.157 0.843 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.027 0.973 48 H 0.072 0.928 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.926 21.800 -18.829 30.468 hybrid contribution -1.563 0.180 -0.128 1.579 sum 8.363 21.980 -18.957 30.206 Atomic orbital electron populations 1.21924 0.95142 1.02317 1.01444 1.21073 0.96173 0.95698 0.97950 1.21859 1.00881 0.95985 1.01796 1.20668 1.00961 0.91348 0.98315 1.19738 0.94626 0.95245 0.98537 1.20938 0.99498 0.93204 1.00743 1.21104 0.96791 0.95793 1.00035 1.20911 0.94086 0.99428 0.97563 1.19800 0.95973 0.93077 0.97057 1.20459 0.91052 0.93305 0.94308 0.89842 1.22477 0.99545 1.02343 0.99185 1.60633 1.51423 1.02823 1.16301 1.22180 0.91599 1.00079 0.93264 1.21441 1.00936 0.93288 0.98064 1.19541 0.93920 0.97595 0.94007 1.21154 1.15239 1.01891 1.17320 0.91034 1.25054 0.97568 0.94968 0.96094 1.69922 1.38894 1.20513 1.25051 0.86761 0.82798 0.81884 0.77722 1.20399 1.21416 1.19033 1.20845 0.96353 0.95176 1.00764 0.92760 0.93015 0.92004 0.91214 0.92736 0.92716 0.92643 0.91084 0.91169 0.86670 0.86380 0.86171 0.92175 0.92274 0.92113 0.84255 0.91509 0.95678 0.93078 0.91925 0.96640 0.97325 0.92803 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.76 37.15 0.33 -0.77 16 2 C -0.09 -0.63 2.91 -90.62 -0.26 -0.90 16 3 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 4 C -0.08 -0.59 4.84 -27.88 -0.13 -0.72 16 5 C -0.08 -0.80 4.71 -104.62 -0.49 -1.29 16 6 C -0.13 -1.23 9.70 -39.58 -0.38 -1.62 16 7 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 8 C -0.10 -1.16 9.33 -39.58 -0.37 -1.53 16 9 C -0.06 -0.68 4.96 -104.62 -0.52 -1.20 16 10 C 0.12 1.41 2.79 -68.87 -0.19 1.22 16 11 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16 12 C -0.18 -1.83 9.14 37.16 0.34 -1.49 16 13 N -0.68 -9.52 5.70 -107.97 -0.62 -10.14 16 14 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 15 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 16 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 17 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 21 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 25 C -0.11 -1.21 7.59 -39.58 -0.30 -1.51 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.51 6.27 -51.93 -0.33 0.19 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.32 7.24 -52.49 -0.38 0.94 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 41 H 0.34 4.44 7.82 -39.29 -0.31 4.13 16 42 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 43 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 47 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.12 1.13 8.02 -52.49 -0.42 0.70 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -30.96 386.63 -10.73 -41.69 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.29 Total: 0.03 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.76 Total: -27.22 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.16 Total: -37.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.96 -10.73 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552047114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.234 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds