Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 C 1.53005 * 109.47080 * 119.99544 * 2 1 3 5 5 C 1.50701 * 109.46691 * 65.00236 * 4 2 1 6 6 C 1.38255 * 120.00219 * 90.00135 * 5 4 2 7 7 C 1.38212 * 120.00284 * 180.02562 * 6 5 4 8 8 C 1.38253 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38215 * 120.00294 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00248 * 179.70563 * 9 8 7 11 11 H 1.08994 * 109.46875 * 160.00370 * 10 9 8 12 12 C 1.53001 * 109.46861 * 279.99771 * 10 9 8 13 13 N 1.46889 * 109.47161 * 39.99698 * 10 9 8 14 14 C 1.46899 * 111.00018 * 155.00339 * 13 10 9 15 15 C 1.53000 * 109.47270 * 180.02562 * 14 13 10 16 16 C 1.53003 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47712 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00100 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99838 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99899 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47179 * 90.00096 * 21 19 17 23 23 H 1.48505 * 109.46466 * 209.99853 * 21 19 17 24 24 H 1.48500 * 109.47249 * 329.99877 * 21 19 17 25 25 C 1.38217 * 120.00041 * 269.99352 * 5 4 2 26 26 H 1.09002 * 109.47737 * 300.00389 * 1 2 3 27 27 H 1.09008 * 109.47301 * 60.00164 * 1 2 3 28 28 H 1.08998 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47563 * 239.99821 * 2 1 3 30 30 H 1.09003 * 109.47513 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46886 * 300.00091 * 3 2 1 32 32 H 1.09002 * 109.47629 * 59.99366 * 3 2 1 33 33 H 1.08998 * 109.46843 * 305.00305 * 4 2 1 34 34 H 1.08993 * 109.47093 * 185.00092 * 4 2 1 35 35 H 1.08000 * 119.99755 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.99776 * 179.97438 * 7 6 5 37 37 H 1.08000 * 120.00399 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.47159 * 300.00374 * 12 10 9 39 39 H 1.09005 * 109.46972 * 59.99874 * 12 10 9 40 40 H 1.08994 * 109.47105 * 180.02562 * 12 10 9 41 41 H 1.00901 * 111.00522 * 278.95329 * 13 10 9 42 42 H 1.08998 * 109.46948 * 299.99813 * 14 13 10 43 43 H 1.08992 * 109.47236 * 59.99955 * 14 13 10 44 44 H 1.09006 * 109.46970 * 300.00046 * 15 14 13 45 45 H 1.08999 * 109.47372 * 60.00027 * 15 14 13 46 46 H 1.09000 * 109.46985 * 300.00510 * 16 15 14 47 47 H 1.09003 * 109.46996 * 59.99270 * 16 15 14 48 48 H 0.96995 * 119.99501 * 180.02562 * 20 19 17 49 49 H 1.08001 * 119.99701 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1732 1.1890 6 6 2.4815 -3.0967 0.5951 7 6 2.1156 -4.4284 0.5393 8 6 0.9091 -4.8369 1.0768 9 6 0.0691 -3.9137 1.6705 10 6 -1.2490 -4.3579 2.2506 11 1 -1.6010 -3.6134 2.9645 12 6 -2.2751 -4.5114 1.1261 13 7 -1.0741 -5.6468 2.9331 14 6 -2.0934 -5.8337 3.9743 15 6 -1.8787 -7.1836 4.6617 16 6 -2.9399 -7.3781 5.7466 17 6 -2.7289 -8.7080 6.4233 18 1 -1.9191 -9.3504 6.1106 19 6 -3.5696 -9.1044 7.4416 20 7 -3.3857 -10.2652 8.0318 21 14 -4.9708 -7.9934 7.9819 22 1 -6.1867 -8.3095 7.1901 23 1 -5.2484 -8.2129 9.4242 24 1 -4.5911 -6.5749 7.7611 25 6 0.4357 -2.5819 1.7275 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1262 -0.6442 1.2953 35 1 3.4234 -2.7774 0.1741 36 1 2.7718 -5.1496 0.0749 37 1 0.6230 -5.8773 1.0328 38 1 -2.4048 -3.5551 0.6196 39 1 -1.9230 -5.2559 0.4120 40 1 -3.2285 -4.8323 1.5457 41 1 -1.0870 -6.4101 2.2734 42 1 -2.0114 -5.0343 4.7107 43 1 -3.0843 -5.8100 3.5210 44 1 -1.9603 -7.9833 3.9255 45 1 -0.8877 -7.2070 5.1151 46 1 -2.8579 -6.5784 6.4826 47 1 -3.9311 -7.3545 5.2936 48 1 -3.9774 -10.5443 8.7479 49 1 -0.2208 -1.8604 2.1911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552047114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -32.010820 kcal Electronic energy + Delta-G solvation = -22348.138119 eV Core-core repulsion = 19272.571733 eV Total energy + Delta-G solvation = -3075.566386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70093 -38.42835 -36.94175 -35.73298 -34.07240 -32.12873 -31.96766 -29.98898 -28.00717 -27.89886 -27.23220 -24.76411 -23.62029 -22.91911 -21.91462 -21.39132 -20.26904 -18.92164 -17.54464 -16.81983 -16.47857 -16.29411 -16.18286 -15.74396 -15.25466 -15.21429 -14.95642 -14.72045 -14.50791 -14.30384 -14.06785 -13.73240 -13.49294 -13.33782 -13.10417 -13.01730 -12.98921 -12.73287 -12.64057 -12.45467 -12.43501 -12.11347 -11.83324 -11.80168 -11.66875 -11.54803 -11.49463 -11.44773 -11.37444 -11.19704 -10.76346 -9.62519 -9.40797 -9.28194 -8.29357 -6.33677 0.54621 0.57951 1.35463 1.38085 1.50363 2.36473 2.88147 3.05665 3.25321 3.81305 3.88220 4.02217 4.05696 4.13225 4.19075 4.24025 4.33263 4.35935 4.38622 4.43549 4.61769 4.63687 4.67899 4.70929 4.79525 4.81027 4.85244 4.92176 4.96834 5.00009 5.01104 5.08865 5.09371 5.12142 5.16430 5.24285 5.25543 5.38923 5.45856 5.50638 5.51609 5.61035 5.66540 5.68201 5.74786 5.81681 6.14549 6.23130 6.30146 6.47406 6.74639 7.30727 8.87643 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.002483 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.717858 B =11274.502968 C =11667.879994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.073 4.073 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.127 4.127 8 C -0.119 4.119 9 C -0.071 4.071 10 C 0.122 3.878 11 H 0.082 0.918 12 C -0.170 4.170 13 N -0.688 5.688 14 C 0.072 3.928 15 C -0.090 4.090 16 C -0.010 4.010 17 C -0.534 4.534 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.953 5.953 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.245 1.245 25 C -0.121 4.121 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.343 0.657 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.019 0.981 47 H 0.020 0.980 48 H 0.266 0.734 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 24.390 -20.376 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.137 4.137 9 C -0.072 4.072 10 C 0.012 3.988 11 H 0.100 0.900 12 C -0.229 4.229 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.129 4.129 16 C -0.048 4.048 17 C -0.572 4.572 18 H 0.047 0.953 19 C -0.197 4.197 20 N -0.594 5.594 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.169 1.169 25 C -0.140 4.140 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.429 24.524 -19.805 32.903 hybrid contribution -1.284 -0.725 0.126 1.480 sum 8.144 23.800 -19.679 31.938 Atomic orbital electron populations 1.21914 0.95406 1.01627 1.01813 1.21038 0.95912 0.96293 0.97317 1.21837 1.01240 0.95123 1.02092 1.20694 1.01523 0.90083 0.98757 1.19997 0.94201 0.96357 0.97743 1.21222 1.00239 0.93004 1.00462 1.21346 0.96674 0.96577 0.99866 1.21020 0.94822 0.99456 0.98423 1.19838 0.95985 0.93636 0.97719 1.20454 0.91839 0.91898 0.94569 0.89989 1.22399 0.98762 1.03013 0.98688 1.60547 1.50696 1.04083 1.16569 1.21893 0.92737 0.97327 0.93756 1.21260 0.98710 0.95787 0.97095 1.19487 0.95695 0.94690 0.94890 1.21521 1.14071 1.03609 1.17960 0.95331 1.26104 1.00863 0.96660 0.96103 1.70084 1.40535 1.22793 1.25954 0.85582 0.78870 0.80353 0.77365 1.19005 1.20987 1.16879 1.20991 0.96945 0.94984 1.01031 0.92522 0.92544 0.93173 0.91592 0.92179 0.92303 0.92485 0.90950 0.90314 0.84823 0.84922 0.86389 0.91086 0.92095 0.92380 0.83774 0.91463 0.94592 0.93437 0.93565 0.96237 0.96184 0.92518 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.76 71.98 0.63 -1.32 16 2 C -0.09 -1.06 2.91 -10.79 -0.03 -1.09 16 3 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 4 C -0.07 -1.00 4.84 29.85 0.14 -0.86 16 5 C -0.08 -1.50 4.71 -19.86 -0.09 -1.59 16 6 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 7 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 8 C -0.12 -2.65 9.33 22.27 0.21 -2.44 16 9 C -0.07 -1.59 4.96 -19.86 -0.10 -1.69 16 10 C 0.12 2.75 2.79 44.17 0.12 2.87 16 11 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 12 C -0.17 -3.25 9.14 71.98 0.66 -2.59 16 13 N -0.69 -18.56 5.70 -495.49 -2.83 -21.39 16 14 C 0.07 2.22 5.48 86.30 0.47 2.70 16 15 C -0.09 -3.61 5.41 30.60 0.17 -3.44 16 16 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 17 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 18 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 19 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 20 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 21 Si 0.96 44.91 27.47 68.60 1.88 46.79 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 25 C -0.12 -2.44 7.59 22.27 0.17 -2.27 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.77 6.27 -2.39 -0.01 0.75 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 35 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.12 2.57 7.24 -2.91 -0.02 2.55 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.14 8.13 -2.38 -0.02 1.12 16 40 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 41 H 0.34 8.74 7.82 -89.69 -0.70 8.04 16 42 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 43 H 0.04 1.05 7.44 -2.39 -0.02 1.03 16 44 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 47 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 49 H 0.12 2.23 8.02 -2.91 -0.02 2.21 16 Total: -1.00 -67.09 386.63 3.76 -63.33 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.12 Total: 20.35 kcal Atomic # 6 Polarization: -52.58 SS G_CDS: 4.28 Total: -48.29 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.53 Total: -82.18 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -67.09 3.76 -63.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552047114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -67.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds