Wall clock time and date at job start Tue Mar 31 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47164 * 299.99955 * 6 5 4 8 8 C 1.52999 * 109.46623 * 59.99856 * 6 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 6 5 11 11 H 1.08004 * 119.99967 * 0.02562 * 10 9 6 12 12 C 1.37875 * 120.00542 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99408 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46931 * 89.99755 * 14 12 10 16 16 H 1.48500 * 109.46738 * 209.99997 * 14 12 10 17 17 H 1.48501 * 109.46755 * 329.99741 * 14 12 10 18 18 C 1.53003 * 109.46968 * 119.99930 * 2 1 3 19 19 H 1.09003 * 109.47265 * 59.99566 * 18 2 1 20 20 C 1.52995 * 109.47104 * 179.97438 * 18 2 1 21 21 C 1.50696 * 109.47086 * 299.99746 * 18 2 1 22 22 C 1.38234 * 119.99976 * 299.72603 * 21 18 2 23 23 C 1.38241 * 119.99874 * 179.78668 * 22 21 18 24 24 C 1.38235 * 119.99965 * 0.44536 * 23 22 21 25 25 C 1.38234 * 119.99934 * 359.80942 * 24 23 22 26 26 C 1.38234 * 120.00050 * 120.00087 * 21 18 2 27 27 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 28 28 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 29 29 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 31 31 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 32 32 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47375 * 300.00034 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 8 6 5 37 37 H 1.09002 * 109.46716 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47486 * 299.99829 * 8 6 5 39 39 H 1.08996 * 109.46952 * 300.00302 * 9 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 9 6 5 41 41 H 0.96999 * 119.99910 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.47618 * 60.00090 * 20 18 2 43 43 H 1.09005 * 109.47021 * 180.02562 * 20 18 2 44 44 H 1.09004 * 109.47259 * 299.99909 * 20 18 2 45 45 H 1.07997 * 120.00235 * 359.97438 * 22 21 18 46 46 H 1.08006 * 119.99866 * 180.27805 * 23 22 21 47 47 H 1.08002 * 119.99681 * 179.83480 * 24 23 22 48 48 H 1.08001 * 119.99896 * 180.02562 * 25 24 23 49 49 H 1.08002 * 120.00513 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 3.9934 -1.0854 -3.2852 8 6 1.6471 -1.6894 -3.8952 9 6 2.6610 0.4197 -4.7694 10 6 3.1663 -0.3246 -5.9784 11 1 3.4159 -1.3726 -5.9020 12 6 3.3102 0.3322 -7.1821 13 7 3.0058 1.6083 -7.2752 14 14 3.9359 -0.5906 -8.6808 15 1 2.7865 -1.1726 -9.4192 16 1 4.6708 0.3466 -9.5679 17 1 4.8479 -1.6792 -8.2467 18 6 2.0400 -0.7213 1.2493 19 1 1.6766 -1.7489 1.2494 20 6 3.5700 -0.7218 1.2490 21 6 1.5377 -0.0108 2.4797 22 6 1.8764 1.3110 2.7013 23 6 1.4120 1.9640 3.8277 24 6 0.6165 1.2925 4.7372 25 6 0.2822 -0.0308 4.5183 26 6 0.7430 -0.6825 3.3896 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4496 -1.4980 -1.4100 31 1 2.7589 1.0460 -2.1182 32 1 1.0871 0.6161 -2.5525 33 1 3.9468 -1.7644 -2.4338 34 1 4.3592 -1.6241 -4.1594 35 1 4.6696 -0.2616 -3.0564 36 1 0.6516 -1.2960 -4.1012 37 1 2.0128 -2.2274 -4.7698 38 1 1.6004 -2.3684 -3.0438 39 1 1.6654 0.8128 -4.9751 40 1 3.3369 1.2437 -4.5409 41 1 3.1066 2.0704 -8.1221 42 1 3.9338 0.3057 1.2488 43 1 3.9333 -1.2361 2.1388 44 1 3.9330 -1.2360 0.3590 45 1 2.5013 1.8344 1.9928 46 1 1.6729 2.9980 3.9986 47 1 0.2559 1.8019 5.6186 48 1 -0.3397 -0.5553 5.2287 49 1 0.4816 -1.7164 3.2186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554358617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:12 Heat of formation + Delta-G solvation = -7.651348 kcal Electronic energy + Delta-G solvation = -23342.917343 eV Core-core repulsion = 20268.407263 eV Total energy + Delta-G solvation = -3074.510080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83870 -37.97004 -36.07069 -33.15632 -32.02562 -31.04052 -29.29889 -29.16320 -26.84552 -26.29876 -25.11102 -23.97861 -22.89803 -22.57580 -21.56307 -19.84210 -17.84322 -16.98157 -16.21253 -15.65099 -15.19731 -14.89164 -14.79951 -14.34293 -14.30259 -13.63363 -13.45079 -13.30466 -13.27557 -12.92022 -12.70049 -12.55576 -12.10720 -12.02244 -11.95203 -11.67231 -11.55867 -11.28680 -11.09359 -10.93907 -10.84472 -10.76315 -10.72359 -10.51385 -10.44377 -10.22336 -10.06858 -9.65851 -9.05099 -8.99103 -8.86570 -8.74109 -8.30077 -7.98009 -5.94650 -3.94604 1.24468 1.26988 3.34153 3.40802 3.43752 3.65863 4.34549 4.51053 4.64203 4.81925 4.90749 4.91629 5.02988 5.17971 5.32720 5.37652 5.39855 5.41222 5.51139 5.62174 5.72587 5.74835 5.81568 5.89368 5.91289 5.98730 6.01014 6.07093 6.13464 6.21097 6.32059 6.34622 6.36827 6.37812 6.48461 6.55110 6.61933 6.69478 6.82920 6.85703 6.88706 7.23915 7.27478 7.29533 7.45930 7.71381 7.75783 7.88524 8.05982 8.50523 9.10935 9.68118 11.17067 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.002838 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.552026 B = 9865.422797 C = 9980.883372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.679 5.679 5 C 0.072 3.928 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.041 4.041 19 H 0.074 0.926 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.338 0.662 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.258 0.742 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -3.166 22.529 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.094 0.906 4 N -0.310 5.310 5 C -0.057 4.057 6 C -0.058 4.058 7 C -0.172 4.172 8 C -0.186 4.186 9 C -0.004 4.004 10 C -0.544 4.544 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.060 4.060 19 H 0.093 0.907 20 C -0.190 4.190 21 C -0.064 4.064 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.929 -2.941 22.552 23.079 hybrid contribution -0.774 -0.149 -1.109 1.360 sum -4.703 -3.090 21.443 22.169 Atomic orbital electron populations 1.22502 0.97656 1.01823 1.02029 1.21551 0.92170 0.97857 0.90318 0.90646 1.60621 1.56635 1.09988 1.03753 1.22108 0.98688 0.94896 0.90006 1.20617 0.94874 0.96081 0.94230 1.21589 0.95905 0.99821 0.99915 1.21765 0.98686 0.97880 1.00244 1.19118 0.96793 0.93688 0.90780 1.21242 1.42741 0.96293 0.94120 0.92315 1.25019 0.95919 0.94829 0.98873 1.69969 1.49341 1.08978 1.25515 0.86670 0.78924 0.79682 0.83184 1.20852 1.21388 1.19917 1.20146 0.96713 0.98605 0.90544 0.90742 1.21702 0.93526 1.01833 1.01948 1.19954 0.96360 0.94161 0.95943 1.21059 1.00146 0.94499 0.97592 1.21150 0.98052 0.99798 0.94691 1.21098 0.99322 0.94968 0.99537 1.21111 1.00145 0.94983 0.97617 1.21077 0.98318 0.99849 0.94551 0.92339 0.92620 0.92736 0.84270 0.91748 0.95934 0.93872 0.92814 0.94241 0.94198 0.91815 0.94800 0.97007 0.96734 0.93196 0.93150 0.93771 0.90412 0.86058 0.86306 0.86496 0.86417 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.92 37.16 0.33 -1.75 16 2 C 0.09 1.09 1.99 -67.71 -0.14 0.96 16 3 H 0.08 0.97 7.06 -51.93 -0.37 0.61 16 4 N -0.68 -9.32 4.69 -106.72 -0.50 -9.82 16 5 C 0.07 1.21 4.45 -3.82 -0.02 1.19 16 6 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 7 C -0.11 -2.19 8.06 37.16 0.30 -1.90 16 8 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 9 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 10 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 11 H 0.06 1.56 5.68 -52.48 -0.30 1.27 16 12 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.04 -0.44 2.34 -91.77 -0.21 -0.65 16 19 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 20 C -0.13 -1.47 8.85 37.16 0.33 -1.14 16 21 C -0.06 -0.66 3.52 -104.63 -0.37 -1.03 16 22 C -0.11 -1.19 8.71 -39.58 -0.34 -1.53 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 24 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.16 9.67 -39.58 -0.38 -1.54 16 27 H 0.06 0.66 7.22 -51.93 -0.37 0.28 16 28 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.34 4.54 6.51 -39.29 -0.26 4.28 16 31 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 32 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 33 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 34 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.28 6.61 -51.93 -0.34 0.93 16 38 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.96 7.60 -51.93 -0.39 0.56 16 45 H 0.12 1.21 7.11 -52.49 -0.37 0.84 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.99 7.95 -52.49 -0.42 0.57 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -28.96 377.18 -9.90 -38.85 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.83 Total: 2.01 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -1.97 Total: -27.15 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.24 Total: -36.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.96 -9.90 -38.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.202 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds