Wall clock time and date at job start Tue Mar 31 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47164 * 299.99955 * 6 5 4 8 8 C 1.52999 * 109.46623 * 59.99856 * 6 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 6 5 11 11 H 1.08004 * 119.99967 * 0.02562 * 10 9 6 12 12 C 1.37875 * 120.00542 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99408 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46931 * 89.99755 * 14 12 10 16 16 H 1.48500 * 109.46738 * 209.99997 * 14 12 10 17 17 H 1.48501 * 109.46755 * 329.99741 * 14 12 10 18 18 C 1.53003 * 109.46968 * 119.99930 * 2 1 3 19 19 H 1.09003 * 109.47265 * 59.99566 * 18 2 1 20 20 C 1.52995 * 109.47104 * 179.97438 * 18 2 1 21 21 C 1.50696 * 109.47086 * 299.99746 * 18 2 1 22 22 C 1.38234 * 119.99976 * 299.72603 * 21 18 2 23 23 C 1.38241 * 119.99874 * 179.78668 * 22 21 18 24 24 C 1.38235 * 119.99965 * 0.44536 * 23 22 21 25 25 C 1.38234 * 119.99934 * 359.80942 * 24 23 22 26 26 C 1.38234 * 120.00050 * 120.00087 * 21 18 2 27 27 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 28 28 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 29 29 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 31 31 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 32 32 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47375 * 300.00034 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 8 6 5 37 37 H 1.09002 * 109.46716 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47486 * 299.99829 * 8 6 5 39 39 H 1.08996 * 109.46952 * 300.00302 * 9 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 9 6 5 41 41 H 0.96999 * 119.99910 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.47618 * 60.00090 * 20 18 2 43 43 H 1.09005 * 109.47021 * 180.02562 * 20 18 2 44 44 H 1.09004 * 109.47259 * 299.99909 * 20 18 2 45 45 H 1.07997 * 120.00235 * 359.97438 * 22 21 18 46 46 H 1.08006 * 119.99866 * 180.27805 * 23 22 21 47 47 H 1.08002 * 119.99681 * 179.83480 * 24 23 22 48 48 H 1.08001 * 119.99896 * 180.02562 * 25 24 23 49 49 H 1.08002 * 120.00513 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 3.9934 -1.0854 -3.2852 8 6 1.6471 -1.6894 -3.8952 9 6 2.6610 0.4197 -4.7694 10 6 3.1663 -0.3246 -5.9784 11 1 3.4159 -1.3726 -5.9020 12 6 3.3102 0.3322 -7.1821 13 7 3.0058 1.6083 -7.2752 14 14 3.9359 -0.5906 -8.6808 15 1 2.7865 -1.1726 -9.4192 16 1 4.6708 0.3466 -9.5679 17 1 4.8479 -1.6792 -8.2467 18 6 2.0400 -0.7213 1.2493 19 1 1.6766 -1.7489 1.2494 20 6 3.5700 -0.7218 1.2490 21 6 1.5377 -0.0108 2.4797 22 6 1.8764 1.3110 2.7013 23 6 1.4120 1.9640 3.8277 24 6 0.6165 1.2925 4.7372 25 6 0.2822 -0.0308 4.5183 26 6 0.7430 -0.6825 3.3896 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4496 -1.4980 -1.4100 31 1 2.7589 1.0460 -2.1182 32 1 1.0871 0.6161 -2.5525 33 1 3.9468 -1.7644 -2.4338 34 1 4.3592 -1.6241 -4.1594 35 1 4.6696 -0.2616 -3.0564 36 1 0.6516 -1.2960 -4.1012 37 1 2.0128 -2.2274 -4.7698 38 1 1.6004 -2.3684 -3.0438 39 1 1.6654 0.8128 -4.9751 40 1 3.3369 1.2437 -4.5409 41 1 3.1066 2.0704 -8.1221 42 1 3.9338 0.3057 1.2488 43 1 3.9333 -1.2361 2.1388 44 1 3.9330 -1.2360 0.3590 45 1 2.5013 1.8344 1.9928 46 1 1.6729 2.9980 3.9986 47 1 0.2559 1.8019 5.6186 48 1 -0.3397 -0.5553 5.2287 49 1 0.4816 -1.7164 3.2186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554358617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:11 Heat of formation + Delta-G solvation = -21.017829 kcal Electronic energy + Delta-G solvation = -23343.496957 eV Core-core repulsion = 20268.407263 eV Total energy + Delta-G solvation = -3075.089694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64117 -39.26570 -37.31750 -34.76708 -33.57237 -31.72953 -30.37319 -30.08657 -28.76016 -27.85812 -26.61855 -24.94076 -24.32225 -23.54749 -22.57600 -20.75399 -19.42843 -18.32360 -17.72725 -16.72666 -16.35148 -16.26422 -15.91973 -15.61749 -15.36033 -14.77488 -14.64071 -14.58108 -14.29459 -14.04300 -13.99778 -13.86866 -13.45242 -13.41776 -13.06060 -12.86087 -12.75071 -12.67895 -12.49862 -12.39871 -12.23237 -12.12422 -12.01885 -11.94307 -11.87503 -11.53521 -11.37224 -11.34229 -10.83536 -10.66917 -10.50004 -9.75300 -9.57328 -9.13893 -8.13504 -6.20412 0.52931 0.56697 1.40887 1.41516 1.52219 2.44045 2.93262 3.20439 3.28902 3.79224 4.01842 4.14157 4.17943 4.20042 4.23118 4.32705 4.35935 4.40183 4.42816 4.60488 4.67264 4.71315 4.75628 4.77272 4.87579 4.88965 4.97035 5.02215 5.11163 5.16615 5.20524 5.21164 5.23953 5.24928 5.29259 5.34531 5.52511 5.53860 5.56789 5.61297 5.67343 5.69345 5.69847 5.84951 5.90327 5.94381 6.16659 6.19765 6.38684 6.61859 6.95118 7.46933 8.98953 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.002838 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.552026 B = 9865.422797 C = 9980.883372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.063 0.937 4 N -0.671 5.671 5 C 0.086 3.914 6 C -0.054 4.054 7 C -0.105 4.105 8 C -0.121 4.121 9 C 0.040 3.960 10 C -0.512 4.512 11 H 0.066 0.934 12 C -0.006 4.006 13 N -0.939 5.939 14 Si 0.956 3.044 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.262 1.262 18 C -0.031 4.031 19 H 0.083 0.917 20 C -0.129 4.129 21 C -0.074 4.074 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.127 4.127 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.344 0.656 31 H 0.052 0.948 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.069 0.931 39 H -0.018 1.018 40 H -0.018 1.018 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 -5.091 24.170 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 H 0.081 0.919 4 N -0.302 5.302 5 C -0.043 4.043 6 C -0.054 4.054 7 C -0.162 4.162 8 C -0.179 4.179 9 C 0.002 3.998 10 C -0.550 4.550 11 H 0.084 0.916 12 C -0.202 4.202 13 N -0.581 5.581 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.050 4.050 19 H 0.101 0.899 20 C -0.187 4.187 21 C -0.075 4.075 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.000 1.000 40 H 0.001 0.999 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.134 0.866 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.347 -4.884 24.210 25.077 hybrid contribution -0.666 0.504 -1.531 1.744 sum -5.014 -4.380 22.679 23.636 Atomic orbital electron populations 1.22413 0.96946 1.02404 1.01484 1.21546 0.92652 0.97316 0.90035 0.91887 1.60557 1.57165 1.09511 1.02967 1.21776 0.97697 0.94705 0.90126 1.20476 0.96174 0.95630 0.93111 1.21488 0.94908 0.99674 1.00174 1.21679 0.97682 0.97528 1.00979 1.19007 0.93965 0.93807 0.92997 1.21626 1.41872 0.96709 0.94820 0.91554 1.25933 0.96335 0.95654 1.02307 1.70115 1.50869 1.10742 1.26335 0.85576 0.78572 0.78502 0.79205 1.20072 1.21314 1.18656 1.20027 0.96272 0.98797 0.89926 0.89897 1.21653 0.93925 1.01345 1.01728 1.19927 0.97192 0.94243 0.96113 1.21150 1.00706 0.94857 0.98145 1.21387 0.98137 1.00602 0.94550 1.21415 0.98740 0.95199 0.99977 1.21425 0.99992 0.95143 0.97720 1.21291 0.98055 1.00562 0.94612 0.91995 0.94013 0.91546 0.83576 0.92963 0.96775 0.91097 0.94472 0.95276 0.94688 0.93537 0.91209 1.00005 0.99941 0.93209 0.93822 0.92956 0.91543 0.86623 0.85043 0.84458 0.84288 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 8.92 71.98 0.64 -3.11 16 2 C 0.09 2.16 1.99 44.92 0.09 2.25 16 3 H 0.06 1.62 7.06 -2.39 -0.02 1.61 16 4 N -0.67 -17.51 4.69 -491.56 -2.31 -19.81 16 5 C 0.09 2.93 4.45 86.31 0.38 3.31 16 6 C -0.05 -2.11 0.60 -52.18 -0.03 -2.14 16 7 C -0.11 -3.95 8.06 71.98 0.58 -3.37 16 8 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16 9 C 0.04 2.08 4.04 29.85 0.12 2.20 16 10 C -0.51 -28.49 7.65 25.60 0.20 -28.29 16 11 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 12 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 13 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 14 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 18 C -0.03 -0.62 2.34 -11.54 -0.03 -0.64 16 19 H 0.08 1.52 7.88 -2.39 -0.02 1.50 16 20 C -0.13 -2.71 8.85 71.98 0.64 -2.07 16 21 C -0.07 -1.43 3.52 -19.87 -0.07 -1.50 16 22 C -0.13 -2.59 8.71 22.27 0.19 -2.40 16 23 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.14 -2.10 10.05 22.27 0.22 -1.87 16 25 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 26 C -0.13 -2.16 9.67 22.27 0.22 -1.95 16 27 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 28 H 0.04 1.01 7.45 -2.39 -0.02 0.99 16 29 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.34 8.37 6.51 -89.70 -0.58 7.79 16 31 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 32 H 0.01 0.50 7.44 -2.39 -0.02 0.48 16 33 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 34 H 0.04 1.50 6.62 -2.39 -0.02 1.48 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.81 6.61 -2.39 -0.02 1.79 16 38 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.04 0.96 7.38 -2.39 -0.02 0.94 16 43 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.07 1.54 7.60 -2.39 -0.02 1.52 16 45 H 0.12 2.33 7.11 -2.91 -0.02 2.31 16 46 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 48 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 49 H 0.13 1.83 7.95 -2.91 -0.02 1.80 16 Total: -1.00 -63.31 377.18 4.95 -58.37 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.31 Total: 19.29 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 4.63 Total: -46.91 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.02 Total: -77.49 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.31 4.95 -58.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.351 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds