Wall clock time and date at job start Tue Mar 31 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47135 * 2 1 4 4 C 1.50693 * 109.47453 * 239.99422 * 2 1 3 5 5 C 1.38231 * 120.00090 * 299.49892 * 4 2 1 6 6 C 1.38241 * 120.00003 * 179.80968 * 5 4 2 7 7 C 1.38228 * 119.99868 * 0.39827 * 6 5 4 8 8 C 1.38235 * 120.00066 * 359.85111 * 7 6 5 9 9 C 1.38231 * 120.00165 * 119.76990 * 4 2 1 10 10 C 1.53003 * 109.46794 * 119.99498 * 2 1 3 11 11 H 1.09002 * 109.47340 * 60.81837 * 10 2 1 12 12 C 1.53003 * 109.47281 * 300.81918 * 10 2 1 13 13 N 1.46904 * 109.47172 * 180.82170 * 10 2 1 14 14 C 1.46898 * 111.00020 * 205.00107 * 13 10 2 15 15 C 1.53004 * 109.47128 * 179.97438 * 14 13 10 16 16 C 1.52995 * 109.46648 * 299.99785 * 15 14 13 17 17 C 1.52995 * 109.47153 * 59.99850 * 15 14 13 18 18 C 1.52994 * 109.47148 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47165 * 179.97438 * 18 15 14 20 20 H 1.07998 * 120.00227 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00076 * 179.97438 * 19 18 15 22 22 N 1.31518 * 119.99838 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47042 * 120.00479 * 23 21 19 26 26 H 1.48503 * 109.47361 * 240.00729 * 23 21 19 27 27 H 1.08999 * 109.47848 * 300.00570 * 1 2 3 28 28 H 1.09001 * 109.46784 * 60.00588 * 1 2 3 29 29 H 1.09001 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00066 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.99866 * 180.23200 * 6 5 4 32 32 H 1.08000 * 119.99679 * 179.83774 * 7 6 5 33 33 H 1.08001 * 119.99609 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.99778 * 359.97438 * 9 4 2 35 35 H 1.09001 * 109.46739 * 66.50172 * 12 10 2 36 36 H 1.08999 * 109.47460 * 186.50696 * 12 10 2 37 37 H 1.08996 * 109.46887 * 306.50853 * 12 10 2 38 38 H 1.00899 * 110.99646 * 328.95114 * 13 10 2 39 39 H 1.08999 * 109.47271 * 299.99604 * 14 13 10 40 40 H 1.08999 * 109.47233 * 59.99888 * 14 13 10 41 41 H 1.08999 * 109.47350 * 60.00359 * 16 15 14 42 42 H 1.09002 * 109.47095 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47443 * 299.99878 * 16 15 14 44 44 H 1.08996 * 109.47383 * 59.99898 * 17 15 14 45 45 H 1.08997 * 109.47434 * 180.02562 * 17 15 14 46 46 H 1.09009 * 109.47186 * 299.99890 * 17 15 14 47 47 H 1.09009 * 109.47048 * 300.00185 * 18 15 14 48 48 H 1.09007 * 109.47181 * 59.99625 * 18 15 14 49 49 H 0.97003 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 1.7070 -2.0369 -1.4437 6 6 2.1646 -2.6876 -2.5744 7 6 2.9544 -2.0141 -3.4873 8 6 3.2840 -0.6891 -3.2713 9 6 2.8231 -0.0374 -2.1427 10 6 2.0399 -0.7212 1.2494 11 1 1.6886 -1.7530 1.2422 12 6 1.5131 -0.0118 2.4985 13 7 3.5088 -0.7040 1.2594 14 6 4.0430 -1.8249 2.0443 15 6 5.5721 -1.7739 2.0310 16 6 6.0731 -1.8765 0.5891 17 6 6.0436 -0.4529 2.6421 18 6 6.1285 -2.9417 2.8480 19 6 7.6345 -2.8918 2.8344 20 1 8.1440 -2.1056 2.2971 21 6 8.3622 -3.8494 3.5087 22 7 7.7418 -4.8066 4.1634 23 14 10.2291 -3.7879 3.4912 24 1 10.6785 -2.6220 2.6888 25 1 10.7330 -3.6552 4.8817 26 1 10.7599 -5.0375 2.8894 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.0931 -2.5642 -0.7285 31 1 1.9073 -3.7229 -2.7430 32 1 3.3140 -2.5232 -4.3693 33 1 3.9013 -0.1631 -3.9844 34 1 3.0806 0.9978 -1.9739 35 1 0.4301 -0.1244 2.5507 36 1 1.9675 -0.4528 3.3857 37 1 1.7662 1.0472 2.4488 38 1 3.8769 -0.7126 0.3200 39 1 3.6856 -1.7521 3.0715 40 1 3.7074 -2.7661 1.6088 41 1 5.6768 -1.0448 0.0066 42 1 7.1625 -1.8397 0.5795 43 1 5.7372 -2.8177 0.1538 44 1 5.6866 -0.3798 3.6693 45 1 7.1330 -0.4163 2.6322 46 1 5.6473 0.3789 2.0596 47 1 5.7714 -2.8691 3.8754 48 1 5.7924 -3.8827 2.4123 49 1 8.2538 -5.4804 4.6375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554358618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:15 Heat of formation + Delta-G solvation = -7.157125 kcal Electronic energy + Delta-G solvation = -23914.690283 eV Core-core repulsion = 20840.201634 eV Total energy + Delta-G solvation = -3074.488649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86786 -37.79526 -36.15485 -33.04420 -31.92655 -30.96896 -30.23329 -28.17569 -26.81981 -26.27762 -25.62476 -24.03085 -22.80910 -22.35959 -21.37256 -19.62717 -17.80467 -16.96081 -16.20607 -15.93598 -15.46912 -14.81184 -14.67531 -14.39059 -14.08092 -13.73090 -13.43392 -13.31585 -13.09192 -12.93520 -12.56548 -12.38379 -12.15302 -11.96314 -11.93259 -11.72281 -11.60822 -11.35179 -11.15754 -10.96085 -10.85713 -10.71961 -10.66833 -10.44189 -10.39155 -10.17251 -10.03551 -9.61645 -8.96786 -8.95630 -8.79464 -8.68887 -8.28376 -7.97149 -5.92829 -3.92503 1.30677 1.36151 3.34524 3.42242 3.46047 3.73552 4.40140 4.53013 4.56047 4.78064 4.95138 4.96750 5.06784 5.25939 5.28433 5.42980 5.43319 5.44931 5.48386 5.57811 5.70445 5.77339 5.85718 5.87699 5.91142 5.97895 5.99586 6.03882 6.06153 6.16428 6.36419 6.37918 6.42257 6.45543 6.47782 6.59768 6.61858 6.73262 6.86803 6.89153 6.95888 7.27225 7.31803 7.32755 7.52446 7.74721 7.82496 7.91902 8.08072 8.53089 9.13179 9.70106 11.18952 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.004031 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.059424 B = 6943.796070 C = 7755.838487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 H 0.085 0.915 4 C -0.078 4.078 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.090 3.910 11 H 0.040 0.960 12 C -0.139 4.139 13 N -0.682 5.682 14 C 0.072 3.928 15 C -0.057 4.057 16 C -0.126 4.126 17 C -0.115 4.115 18 C 0.034 3.966 19 C -0.504 4.504 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.886 3.114 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.286 1.286 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.340 0.660 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.032 0.968 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 9.191 -12.238 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 H 0.103 0.897 4 C -0.078 4.078 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.143 4.143 8 C -0.136 4.136 9 C -0.133 4.133 10 C -0.020 4.020 11 H 0.058 0.942 12 C -0.197 4.197 13 N -0.315 5.315 14 C -0.057 4.057 15 C -0.058 4.058 16 C -0.183 4.183 17 C -0.172 4.172 18 C -0.004 4.004 19 C -0.543 4.543 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.911 9.488 -11.611 21.146 hybrid contribution 0.961 -1.034 -0.525 1.506 sum -13.950 8.453 -12.137 20.331 Atomic orbital electron populations 1.21854 0.94124 1.02058 1.01907 1.20390 0.95856 0.99724 0.91400 0.89713 1.19891 0.97561 0.94240 0.96084 1.20999 1.00383 0.94366 0.97471 1.21134 0.98080 0.99755 0.94577 1.21130 0.98699 0.94890 0.99541 1.21132 0.99816 0.94971 0.97654 1.21093 0.97878 0.99996 0.94311 1.21531 0.89288 0.97417 0.93763 0.94184 1.21828 0.99278 1.01049 0.97543 1.60658 1.04795 1.46696 1.19347 1.22114 0.96322 0.89918 0.97346 1.20606 0.91199 0.98059 0.95900 1.21735 1.02006 0.98775 0.95818 1.21586 1.00713 0.95819 0.99102 1.19123 0.95535 0.91413 0.94305 1.21286 0.91601 1.10657 1.30720 0.92266 1.25014 0.98139 0.95707 0.95757 1.69984 1.35053 1.14831 1.33948 0.86621 0.86438 0.77811 0.77651 1.19774 1.21171 1.21219 0.91805 0.92652 0.92612 0.86416 0.86279 0.86332 0.86204 0.86071 0.92960 0.92355 0.92284 0.83924 0.91727 0.96177 0.94954 0.91865 0.94270 0.94237 0.92815 0.93922 0.96743 0.97009 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.64 37.15 0.32 -0.93 16 2 C -0.05 -0.58 2.29 -91.78 -0.21 -0.79 16 3 H 0.08 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.08 -0.88 3.52 -104.63 -0.37 -1.25 16 5 C -0.11 -1.32 8.71 -39.58 -0.34 -1.66 16 6 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 7 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 8 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 9 C -0.11 -1.26 9.50 -39.59 -0.38 -1.63 16 10 C 0.09 1.12 2.06 -67.71 -0.14 0.98 16 11 H 0.04 0.53 6.99 -51.93 -0.36 0.17 16 12 C -0.14 -1.62 8.87 37.16 0.33 -1.29 16 13 N -0.68 -10.25 5.52 -106.72 -0.59 -10.84 16 14 C 0.07 1.29 4.44 -3.82 -0.02 1.28 16 15 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 16 C -0.13 -2.47 7.89 37.15 0.29 -2.18 16 17 C -0.11 -2.29 8.06 37.16 0.30 -1.99 16 18 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 19 C -0.50 -14.04 7.65 -34.44 -0.26 -14.30 16 20 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.49 7.42 -51.93 -0.39 0.10 16 30 H 0.12 1.28 7.10 -52.48 -0.37 0.90 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.17 7.95 -52.48 -0.42 0.75 16 35 H 0.05 0.51 6.78 -51.93 -0.35 0.16 16 36 H 0.06 0.76 7.33 -51.93 -0.38 0.38 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.34 5.18 5.07 -39.29 -0.20 4.98 16 39 H 0.06 1.20 7.35 -51.93 -0.38 0.82 16 40 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 41 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 46 H 0.04 0.77 7.60 -51.92 -0.39 0.37 16 47 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -29.79 374.44 -9.88 -39.67 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.68 Total: 3.02 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -1.97 Total: -27.88 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.15 Total: -37.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.79 -9.88 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.513 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds