Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47135 * 2 1 4 4 C 1.50693 * 109.47453 * 239.99422 * 2 1 3 5 5 C 1.38231 * 120.00090 * 299.49892 * 4 2 1 6 6 C 1.38241 * 120.00003 * 179.80968 * 5 4 2 7 7 C 1.38228 * 119.99868 * 0.39827 * 6 5 4 8 8 C 1.38235 * 120.00066 * 359.85111 * 7 6 5 9 9 C 1.38231 * 120.00165 * 119.76990 * 4 2 1 10 10 C 1.53003 * 109.46794 * 119.99498 * 2 1 3 11 11 H 1.09002 * 109.47340 * 60.81837 * 10 2 1 12 12 C 1.53003 * 109.47281 * 300.81918 * 10 2 1 13 13 N 1.46904 * 109.47172 * 180.82170 * 10 2 1 14 14 C 1.46898 * 111.00020 * 205.00107 * 13 10 2 15 15 C 1.53004 * 109.47128 * 179.97438 * 14 13 10 16 16 C 1.52995 * 109.46648 * 299.99785 * 15 14 13 17 17 C 1.52995 * 109.47153 * 59.99850 * 15 14 13 18 18 C 1.52994 * 109.47148 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47165 * 179.97438 * 18 15 14 20 20 H 1.07998 * 120.00227 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00076 * 179.97438 * 19 18 15 22 22 N 1.31518 * 119.99838 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47042 * 120.00479 * 23 21 19 26 26 H 1.48503 * 109.47361 * 240.00729 * 23 21 19 27 27 H 1.08999 * 109.47848 * 300.00570 * 1 2 3 28 28 H 1.09001 * 109.46784 * 60.00588 * 1 2 3 29 29 H 1.09001 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00066 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.99866 * 180.23200 * 6 5 4 32 32 H 1.08000 * 119.99679 * 179.83774 * 7 6 5 33 33 H 1.08001 * 119.99609 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.99778 * 359.97438 * 9 4 2 35 35 H 1.09001 * 109.46739 * 66.50172 * 12 10 2 36 36 H 1.08999 * 109.47460 * 186.50696 * 12 10 2 37 37 H 1.08996 * 109.46887 * 306.50853 * 12 10 2 38 38 H 1.00899 * 110.99646 * 328.95114 * 13 10 2 39 39 H 1.08999 * 109.47271 * 299.99604 * 14 13 10 40 40 H 1.08999 * 109.47233 * 59.99888 * 14 13 10 41 41 H 1.08999 * 109.47350 * 60.00359 * 16 15 14 42 42 H 1.09002 * 109.47095 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47443 * 299.99878 * 16 15 14 44 44 H 1.08996 * 109.47383 * 59.99898 * 17 15 14 45 45 H 1.08997 * 109.47434 * 180.02562 * 17 15 14 46 46 H 1.09009 * 109.47186 * 299.99890 * 17 15 14 47 47 H 1.09009 * 109.47048 * 300.00185 * 18 15 14 48 48 H 1.09007 * 109.47181 * 59.99625 * 18 15 14 49 49 H 0.97003 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 1.7070 -2.0369 -1.4437 6 6 2.1646 -2.6876 -2.5744 7 6 2.9544 -2.0141 -3.4873 8 6 3.2840 -0.6891 -3.2713 9 6 2.8231 -0.0374 -2.1427 10 6 2.0399 -0.7212 1.2494 11 1 1.6886 -1.7530 1.2422 12 6 1.5131 -0.0118 2.4985 13 7 3.5088 -0.7040 1.2594 14 6 4.0430 -1.8249 2.0443 15 6 5.5721 -1.7739 2.0310 16 6 6.0731 -1.8765 0.5891 17 6 6.0436 -0.4529 2.6421 18 6 6.1285 -2.9417 2.8480 19 6 7.6345 -2.8918 2.8344 20 1 8.1440 -2.1056 2.2971 21 6 8.3622 -3.8494 3.5087 22 7 7.7418 -4.8066 4.1634 23 14 10.2291 -3.7879 3.4912 24 1 10.6785 -2.6220 2.6888 25 1 10.7330 -3.6552 4.8817 26 1 10.7599 -5.0375 2.8894 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.0931 -2.5642 -0.7285 31 1 1.9073 -3.7229 -2.7430 32 1 3.3140 -2.5232 -4.3693 33 1 3.9013 -0.1631 -3.9844 34 1 3.0806 0.9978 -1.9739 35 1 0.4301 -0.1244 2.5507 36 1 1.9675 -0.4528 3.3857 37 1 1.7662 1.0472 2.4488 38 1 3.8769 -0.7126 0.3200 39 1 3.6856 -1.7521 3.0715 40 1 3.7074 -2.7661 1.6088 41 1 5.6768 -1.0448 0.0066 42 1 7.1625 -1.8397 0.5795 43 1 5.7372 -2.8177 0.1538 44 1 5.6866 -0.3798 3.6693 45 1 7.1330 -0.4163 2.6322 46 1 5.6473 0.3789 2.0596 47 1 5.7714 -2.8691 3.8754 48 1 5.7924 -3.8827 2.4123 49 1 8.2538 -5.4804 4.6375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554358618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -21.530696 kcal Electronic energy + Delta-G solvation = -23915.313568 eV Core-core repulsion = 20840.201634 eV Total energy + Delta-G solvation = -3075.111934 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75777 -39.15803 -37.40797 -34.78309 -33.44987 -31.77724 -31.23185 -29.28519 -28.65721 -27.91452 -26.99622 -25.35654 -24.03375 -23.54045 -22.40486 -20.58293 -19.45611 -18.33948 -17.78692 -17.14484 -16.52994 -16.31688 -15.81403 -15.62300 -15.39700 -14.93154 -14.80359 -14.41572 -14.29737 -14.03737 -13.92715 -13.78070 -13.49817 -13.25806 -13.07695 -12.92269 -12.74635 -12.69360 -12.44001 -12.40446 -12.31722 -12.26257 -12.11318 -11.99956 -11.84315 -11.54275 -11.39113 -11.26279 -10.85386 -10.70478 -10.51460 -9.78324 -9.55254 -9.24925 -8.14204 -6.21310 0.48521 0.53890 1.39837 1.40664 1.53137 2.43590 2.91292 3.19694 3.27520 3.73440 3.86508 4.09521 4.17437 4.19362 4.20955 4.30851 4.37596 4.41386 4.46054 4.58806 4.63559 4.68451 4.73896 4.77433 4.79426 4.90247 4.95391 5.02695 5.07323 5.10267 5.14409 5.19949 5.20291 5.21120 5.21648 5.37035 5.47690 5.50507 5.52883 5.57681 5.63343 5.66655 5.67045 5.77213 5.86624 5.92233 6.15264 6.19643 6.37820 6.58581 6.93715 7.46068 8.98492 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.004031 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.059424 B = 6943.796070 C = 7755.838487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 H 0.089 0.911 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.134 4.134 8 C -0.124 4.124 9 C -0.124 4.124 10 C 0.089 3.911 11 H 0.031 0.969 12 C -0.136 4.136 13 N -0.675 5.675 14 C 0.086 3.914 15 C -0.054 4.054 16 C -0.116 4.116 17 C -0.105 4.105 18 C 0.041 3.959 19 C -0.513 4.513 20 H 0.066 0.934 21 C -0.004 4.004 22 N -0.938 5.938 23 Si 0.956 3.044 24 H -0.260 1.260 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.341 0.659 39 H 0.056 0.944 40 H 0.007 0.993 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.067 0.933 47 H -0.016 1.016 48 H -0.019 1.019 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 10.999 -13.599 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 H 0.108 0.892 4 C -0.086 4.086 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.020 4.020 11 H 0.049 0.951 12 C -0.194 4.194 13 N -0.308 5.308 14 C -0.044 4.044 15 C -0.054 4.054 16 C -0.173 4.173 17 C -0.162 4.162 18 C 0.004 3.996 19 C -0.551 4.551 20 H 0.084 0.916 21 C -0.201 4.201 22 N -0.580 5.580 23 Si 0.782 3.218 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.002 0.998 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.881 11.314 -12.985 22.761 hybrid contribution 0.888 -1.619 -0.117 1.850 sum -13.994 9.695 -13.102 21.482 Atomic orbital electron populations 1.21831 0.92686 1.02251 1.02797 1.20323 0.96964 0.99350 0.89883 0.89225 1.20011 0.97859 0.94231 0.96540 1.21135 1.00924 0.94837 0.97859 1.21376 0.98346 1.00477 0.94725 1.21417 0.98482 0.95252 1.00029 1.21434 0.99765 0.95066 0.97928 1.21331 0.97739 1.00729 0.94398 1.21617 0.87463 0.97490 0.95479 0.95121 1.21811 1.00522 1.00956 0.96077 1.60629 1.06605 1.44637 1.18969 1.21801 0.94491 0.90615 0.97467 1.20474 0.92909 0.96245 0.95778 1.21616 1.00962 0.99557 0.95196 1.21481 0.99688 0.96007 0.99047 1.18996 0.95133 0.92293 0.93228 1.21638 0.92628 1.10575 1.30260 0.91611 1.25923 1.03335 0.95368 0.95440 1.70125 1.37092 1.15753 1.35007 0.85519 0.80224 0.78213 0.77856 1.18424 1.20754 1.20797 0.90741 0.91922 0.92799 0.86482 0.85331 0.84691 0.84311 0.84757 0.90812 0.94238 0.91732 0.83840 0.92567 0.97435 0.92062 0.93346 0.95098 0.94992 0.94266 0.91423 0.99767 1.00109 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.64 71.98 0.62 -1.50 16 2 C -0.05 -0.89 2.29 -11.54 -0.03 -0.91 16 3 H 0.09 1.65 7.88 -2.39 -0.02 1.63 16 4 C -0.09 -1.81 3.52 -19.87 -0.07 -1.88 16 5 C -0.13 -2.88 8.71 22.27 0.19 -2.69 16 6 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 7 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 8 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 9 C -0.12 -2.46 9.50 22.27 0.21 -2.24 16 10 C 0.09 2.11 2.06 44.92 0.09 2.20 16 11 H 0.03 0.80 6.99 -2.39 -0.02 0.79 16 12 C -0.14 -2.94 8.87 71.98 0.64 -2.30 16 13 N -0.68 -19.45 5.52 -491.55 -2.71 -22.16 16 14 C 0.09 3.11 4.44 86.30 0.38 3.49 16 15 C -0.05 -2.22 0.60 -52.19 -0.03 -2.25 16 16 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 17 C -0.10 -4.11 8.06 71.98 0.58 -3.53 16 18 C 0.04 2.19 4.04 29.84 0.12 2.32 16 19 C -0.51 -28.96 7.65 25.60 0.20 -28.76 16 20 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 22 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 23 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 27 H 0.07 0.99 6.56 -2.39 -0.02 0.97 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.85 7.42 -2.39 -0.02 0.83 16 30 H 0.12 2.52 7.10 -2.91 -0.02 2.50 16 31 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.13 2.23 7.95 -2.91 -0.02 2.21 16 35 H 0.07 1.27 6.78 -2.39 -0.02 1.25 16 36 H 0.04 1.00 7.33 -2.39 -0.02 0.98 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.34 9.75 5.07 -89.69 -0.46 9.29 16 39 H 0.06 2.13 7.35 -2.39 -0.02 2.11 16 40 H 0.01 0.29 8.06 -2.39 -0.02 0.27 16 41 H 0.06 1.99 6.57 -2.39 -0.02 1.97 16 42 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 46 H 0.07 2.30 7.60 -2.38 -0.02 2.28 16 47 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 48 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.56 374.44 4.65 -59.91 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.44 Total: 21.97 kcal Atomic # 6 Polarization: -53.48 SS G_CDS: 4.61 Total: -48.87 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -2.43 Total: -80.07 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.56 4.65 -59.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.379 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds