Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46898 * 109.47123 * 120.00082 * 2 1 3 5 5 C 1.46901 * 110.99830 * 274.99462 * 4 2 1 6 6 C 1.53000 * 109.47220 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47252 * 300.00548 * 6 5 4 8 8 C 1.53001 * 109.46957 * 60.00440 * 6 5 4 9 9 C 1.53004 * 109.47473 * 180.02562 * 6 5 4 10 10 C 1.50691 * 109.47157 * 180.02562 * 9 6 5 11 11 H 1.07997 * 120.00498 * 0.02562 * 10 9 6 12 12 C 1.37888 * 119.99959 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99556 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00015 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47409 * 60.00240 * 14 12 10 16 16 H 1.48505 * 109.46905 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47234 * 299.99913 * 14 12 10 18 18 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 19 19 H 1.09001 * 109.46998 * 299.99705 * 18 2 1 20 20 C 1.52997 * 109.47164 * 179.97438 * 18 2 1 21 21 C 1.50698 * 109.47184 * 59.99667 * 18 2 1 22 22 C 1.38245 * 119.99431 * 59.73158 * 21 18 2 23 23 C 1.38237 * 119.99269 * 179.78957 * 22 21 18 24 24 C 1.38234 * 120.00384 * 0.43420 * 23 22 21 25 25 C 1.38233 * 119.99643 * 359.81821 * 24 23 22 26 26 C 1.38228 * 120.00126 * 240.00037 * 21 18 2 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.00900 * 111.00405 * 151.04786 * 4 2 1 31 31 H 1.09002 * 109.47499 * 300.00154 * 5 4 2 32 32 H 1.09008 * 109.47107 * 60.00023 * 5 4 2 33 33 H 1.08999 * 109.47441 * 59.99650 * 7 6 5 34 34 H 1.08999 * 109.47329 * 180.02562 * 7 6 5 35 35 H 1.09010 * 109.47224 * 299.99601 * 7 6 5 36 36 H 1.08992 * 109.47245 * 60.00174 * 8 6 5 37 37 H 1.09004 * 109.47369 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.46847 * 299.99806 * 8 6 5 39 39 H 1.09002 * 109.46445 * 299.99959 * 9 6 5 40 40 H 1.09002 * 109.46997 * 59.99680 * 9 6 5 41 41 H 0.96999 * 119.99770 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.47230 * 179.97438 * 20 18 2 43 43 H 1.09001 * 109.47375 * 300.00034 * 20 18 2 44 44 H 1.09000 * 109.47140 * 60.00051 * 20 18 2 45 45 H 1.07995 * 119.99936 * 359.97438 * 22 21 18 46 46 H 1.08000 * 119.99610 * 180.27818 * 23 22 21 47 47 H 1.07998 * 120.00233 * 179.83582 * 24 23 22 48 48 H 1.08009 * 119.99828 * 179.97438 * 25 24 23 49 49 H 1.07992 * 120.00101 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5951 -0.5331 3.5744 7 6 1.6452 -1.6888 3.8952 8 6 3.9922 -1.0862 3.2862 9 6 2.6600 0.4199 4.7697 10 6 3.1654 -0.3244 5.9786 11 1 3.4158 -1.3721 5.9021 12 6 3.3093 0.3326 7.1823 13 7 3.0049 1.6087 7.2754 14 14 3.9351 -0.5901 8.6810 15 1 5.2911 -1.1271 8.4012 16 1 3.9982 0.3349 9.8411 17 1 3.0131 -1.7116 8.9925 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5700 -0.7207 -1.2496 21 6 1.5376 -0.0110 -2.4797 22 6 1.8670 1.3142 -2.6956 23 6 1.4098 1.9645 -3.8266 24 6 0.6158 1.2924 -4.7370 25 6 0.2822 -0.0311 -4.5183 26 6 0.7429 -0.6828 -3.3896 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9173 -1.1205 1.0288 31 1 2.7589 1.0462 2.1181 32 1 1.0871 0.6165 2.5525 33 1 1.5986 -2.3678 3.0439 34 1 2.0101 -2.2269 4.7701 35 1 0.6498 -1.2947 4.1006 36 1 4.6689 -0.2629 3.0577 37 1 4.3572 -1.6250 4.1606 38 1 3.9455 -1.7653 2.4348 39 1 3.3366 1.2434 4.5413 40 1 1.6645 0.8137 4.9749 41 1 3.1065 2.0710 8.1220 42 1 3.9333 -1.2350 -2.1394 43 1 3.9330 0.3071 -1.2498 44 1 3.9337 -1.2343 -0.3596 45 1 2.4840 1.8404 -1.9823 46 1 1.6708 2.9985 -3.9975 47 1 0.2564 1.8013 -5.6191 48 1 -0.3385 -0.5561 -5.2294 49 1 0.4824 -1.7168 -3.2189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554358621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -5.207941 kcal Electronic energy + Delta-G solvation = -23352.132417 eV Core-core repulsion = 20277.728290 eV Total energy + Delta-G solvation = -3074.404126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92078 -37.98774 -36.12012 -33.05647 -31.96541 -31.07216 -29.57321 -29.26161 -26.84412 -26.29992 -25.17302 -24.08896 -22.90356 -22.60810 -21.38927 -19.67546 -17.88370 -17.02926 -16.24188 -15.96147 -15.54306 -14.92320 -14.64851 -14.43867 -14.07973 -13.67454 -13.51272 -13.36697 -13.27976 -13.01866 -12.63389 -12.48851 -12.25793 -11.96787 -11.93438 -11.76083 -11.58287 -11.33299 -11.04245 -10.96233 -10.89351 -10.83150 -10.74525 -10.48694 -10.44767 -10.19290 -10.07127 -9.64546 -9.08102 -9.00593 -8.83706 -8.77056 -8.29316 -8.01587 -5.94059 -3.94087 1.20426 1.24119 3.35960 3.40544 3.42786 3.62208 4.32433 4.50969 4.59070 4.73787 4.83652 4.88947 4.96397 5.03817 5.26121 5.32856 5.37968 5.41582 5.48006 5.62254 5.71020 5.74156 5.82174 5.85817 5.86108 5.90585 5.99484 5.99974 6.06839 6.15772 6.31606 6.32151 6.35159 6.38910 6.39100 6.53323 6.57889 6.69934 6.82833 6.84733 6.86013 7.24080 7.28276 7.29935 7.47339 7.71997 7.77373 7.89115 8.06433 8.50986 9.11169 9.68442 11.17618 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.002838 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.184950 B = 9863.192984 C = 9980.521431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.092 3.908 3 H 0.041 0.959 4 N -0.684 5.684 5 C 0.071 3.929 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.058 0.942 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.278 1.278 18 C -0.056 4.056 19 H 0.086 0.914 20 C -0.149 4.149 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.338 0.662 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.012 0.988 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -2.856 -23.218 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 H 0.059 0.941 4 N -0.318 5.318 5 C -0.057 4.057 6 C -0.058 4.058 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.003 4.003 10 C -0.545 4.545 11 H 0.076 0.924 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.075 4.075 19 H 0.104 0.896 20 C -0.207 4.207 21 C -0.063 4.063 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.160 0.840 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.841 -2.957 -22.912 23.419 hybrid contribution 1.077 0.288 0.693 1.313 sum -2.763 -2.670 -22.219 22.549 Atomic orbital electron populations 1.21767 0.94702 1.02048 1.00940 1.21511 0.95962 0.95558 0.88751 0.94132 1.60683 1.33626 1.33710 1.03805 1.22134 1.00089 0.93137 0.90387 1.20622 0.94100 0.96674 0.94446 1.21591 0.98210 0.97509 0.99944 1.21767 0.96979 0.99585 1.00257 1.19114 0.96902 0.93553 0.90760 1.21206 1.42840 0.96272 0.94177 0.92361 1.25021 0.95908 0.94839 0.98847 1.69961 1.49198 1.08978 1.25661 0.86727 0.79391 0.79645 0.82637 1.20376 1.21462 1.20318 1.20363 0.95665 0.99803 0.91641 0.89613 1.21915 0.94445 1.02209 1.02115 1.19807 0.96777 0.94083 0.95648 1.21040 1.00299 0.94414 0.97537 1.21137 0.98105 0.99828 0.94601 1.21111 0.99132 0.94959 0.99534 1.21122 1.00104 0.94965 0.97606 1.21080 0.98030 0.99956 0.94414 0.92252 0.92686 0.93061 0.83986 0.96043 0.91639 0.93888 0.92782 0.94229 0.94149 0.91738 0.94914 0.96990 0.96723 0.93133 0.92299 0.92507 0.91786 0.86215 0.86274 0.86419 0.86305 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.17 37.16 0.34 -1.37 16 2 C 0.09 1.15 2.05 -67.71 -0.14 1.01 16 3 H 0.04 0.54 7.03 -51.93 -0.37 0.17 16 4 N -0.68 -9.84 5.52 -106.72 -0.59 -10.43 16 5 C 0.07 1.24 4.44 -3.82 -0.02 1.22 16 6 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 7 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 8 C -0.13 -2.39 7.89 37.16 0.29 -2.09 16 9 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 10 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 11 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 12 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 13 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 C -0.06 -0.59 2.29 -91.77 -0.21 -0.80 16 19 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 20 C -0.15 -1.48 8.77 37.16 0.33 -1.15 16 21 C -0.06 -0.64 3.52 -104.62 -0.37 -1.01 16 22 C -0.11 -1.17 8.71 -39.58 -0.34 -1.51 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.11 9.67 -39.59 -0.38 -1.49 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.75 7.45 -51.93 -0.39 0.36 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 30 H 0.34 4.64 4.21 -39.29 -0.17 4.48 16 31 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.07 1.20 7.44 -51.92 -0.39 0.81 16 33 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 34 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 35 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 38 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 44 H 0.06 0.65 6.21 -51.93 -0.32 0.33 16 45 H 0.12 1.18 7.10 -52.49 -0.37 0.81 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 49 H 0.12 0.99 7.95 -52.49 -0.42 0.57 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -29.40 374.50 -9.86 -39.25 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.66 Total: 1.97 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -1.96 Total: -26.83 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.15 Total: -36.73 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.40 -9.86 -39.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.043 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds