Wall clock time and date at job start Tue Mar 31 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46898 * 109.47123 * 120.00082 * 2 1 3 5 5 C 1.46901 * 110.99830 * 274.99462 * 4 2 1 6 6 C 1.53000 * 109.47220 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47252 * 300.00548 * 6 5 4 8 8 C 1.53001 * 109.46957 * 60.00440 * 6 5 4 9 9 C 1.53004 * 109.47473 * 180.02562 * 6 5 4 10 10 C 1.50691 * 109.47157 * 180.02562 * 9 6 5 11 11 H 1.07997 * 120.00498 * 0.02562 * 10 9 6 12 12 C 1.37888 * 119.99959 * 179.97438 * 10 9 6 13 13 N 1.31519 * 119.99556 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00015 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47409 * 60.00240 * 14 12 10 16 16 H 1.48505 * 109.46905 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47234 * 299.99913 * 14 12 10 18 18 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 19 19 H 1.09001 * 109.46998 * 299.99705 * 18 2 1 20 20 C 1.52997 * 109.47164 * 179.97438 * 18 2 1 21 21 C 1.50698 * 109.47184 * 59.99667 * 18 2 1 22 22 C 1.38245 * 119.99431 * 59.73158 * 21 18 2 23 23 C 1.38237 * 119.99269 * 179.78957 * 22 21 18 24 24 C 1.38234 * 120.00384 * 0.43420 * 23 22 21 25 25 C 1.38233 * 119.99643 * 359.81821 * 24 23 22 26 26 C 1.38228 * 120.00126 * 240.00037 * 21 18 2 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.00900 * 111.00405 * 151.04786 * 4 2 1 31 31 H 1.09002 * 109.47499 * 300.00154 * 5 4 2 32 32 H 1.09008 * 109.47107 * 60.00023 * 5 4 2 33 33 H 1.08999 * 109.47441 * 59.99650 * 7 6 5 34 34 H 1.08999 * 109.47329 * 180.02562 * 7 6 5 35 35 H 1.09010 * 109.47224 * 299.99601 * 7 6 5 36 36 H 1.08992 * 109.47245 * 60.00174 * 8 6 5 37 37 H 1.09004 * 109.47369 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.46847 * 299.99806 * 8 6 5 39 39 H 1.09002 * 109.46445 * 299.99959 * 9 6 5 40 40 H 1.09002 * 109.46997 * 59.99680 * 9 6 5 41 41 H 0.96999 * 119.99770 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.47230 * 179.97438 * 20 18 2 43 43 H 1.09001 * 109.47375 * 300.00034 * 20 18 2 44 44 H 1.09000 * 109.47140 * 60.00051 * 20 18 2 45 45 H 1.07995 * 119.99936 * 359.97438 * 22 21 18 46 46 H 1.08000 * 119.99610 * 180.27818 * 23 22 21 47 47 H 1.07998 * 120.00233 * 179.83582 * 24 23 22 48 48 H 1.08009 * 119.99828 * 179.97438 * 25 24 23 49 49 H 1.07992 * 120.00101 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5951 -0.5331 3.5744 7 6 1.6452 -1.6888 3.8952 8 6 3.9922 -1.0862 3.2862 9 6 2.6600 0.4199 4.7697 10 6 3.1654 -0.3244 5.9786 11 1 3.4158 -1.3721 5.9021 12 6 3.3093 0.3326 7.1823 13 7 3.0049 1.6087 7.2754 14 14 3.9351 -0.5901 8.6810 15 1 5.2911 -1.1271 8.4012 16 1 3.9982 0.3349 9.8411 17 1 3.0131 -1.7116 8.9925 18 6 2.0400 -0.7213 -1.2493 19 1 1.6767 -1.7490 -1.2492 20 6 3.5700 -0.7207 -1.2496 21 6 1.5376 -0.0110 -2.4797 22 6 1.8670 1.3142 -2.6956 23 6 1.4098 1.9645 -3.8266 24 6 0.6158 1.2924 -4.7370 25 6 0.2822 -0.0311 -4.5183 26 6 0.7429 -0.6828 -3.3896 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9173 -1.1205 1.0288 31 1 2.7589 1.0462 2.1181 32 1 1.0871 0.6165 2.5525 33 1 1.5986 -2.3678 3.0439 34 1 2.0101 -2.2269 4.7701 35 1 0.6498 -1.2947 4.1006 36 1 4.6689 -0.2629 3.0577 37 1 4.3572 -1.6250 4.1606 38 1 3.9455 -1.7653 2.4348 39 1 3.3366 1.2434 4.5413 40 1 1.6645 0.8137 4.9749 41 1 3.1065 2.0710 8.1220 42 1 3.9333 -1.2350 -2.1394 43 1 3.9330 0.3071 -1.2498 44 1 3.9337 -1.2343 -0.3596 45 1 2.4840 1.8404 -1.9823 46 1 1.6708 2.9985 -3.9975 47 1 0.2564 1.8013 -5.6191 48 1 -0.3385 -0.5561 -5.2294 49 1 0.4824 -1.7168 -3.2189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554358621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:21 Heat of formation + Delta-G solvation = -19.170037 kcal Electronic energy + Delta-G solvation = -23352.737859 eV Core-core repulsion = 20277.728290 eV Total energy + Delta-G solvation = -3075.009568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72159 -39.28103 -37.38177 -34.74314 -33.45460 -31.74646 -30.61860 -30.19628 -28.79291 -27.87612 -26.69488 -25.01442 -24.39112 -23.53089 -22.39674 -20.61066 -19.48001 -18.32992 -17.76543 -17.14413 -16.56122 -16.36370 -15.69508 -15.54030 -15.44316 -14.93145 -14.68861 -14.49233 -14.32408 -14.05605 -13.92615 -13.86334 -13.53641 -13.42955 -13.08465 -12.86881 -12.78724 -12.67499 -12.55365 -12.42994 -12.23878 -12.13957 -12.11189 -11.94088 -11.78736 -11.60628 -11.46636 -11.30859 -10.84639 -10.69238 -10.49655 -9.76977 -9.55741 -9.24420 -8.13505 -6.20662 0.50470 0.55292 1.40979 1.43447 1.50663 2.44089 2.91427 3.20219 3.25110 3.76416 3.87293 4.04486 4.16614 4.20039 4.20727 4.28374 4.33320 4.39196 4.41614 4.56550 4.63428 4.68880 4.74436 4.79165 4.82442 4.87784 4.95201 4.96650 5.07421 5.08827 5.11487 5.18252 5.22373 5.22748 5.26470 5.30825 5.40270 5.52280 5.54555 5.59609 5.63683 5.67742 5.68116 5.80343 5.88408 5.93310 6.15108 6.17630 6.37804 6.60421 6.94413 7.46573 8.98773 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.002838 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.184950 B = 9863.192984 C = 9980.521431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.032 0.968 4 N -0.677 5.677 5 C 0.085 3.915 6 C -0.054 4.054 7 C -0.106 4.106 8 C -0.122 4.122 9 C 0.040 3.960 10 C -0.514 4.514 11 H 0.067 0.933 12 C -0.005 4.005 13 N -0.939 5.939 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.268 1.268 18 C -0.046 4.046 19 H 0.090 0.910 20 C -0.148 4.148 21 C -0.073 4.073 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.125 4.125 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.058 0.942 30 H 0.345 0.655 31 H 0.014 0.986 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.067 0.933 39 H -0.018 1.018 40 H -0.018 1.018 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -4.654 -24.895 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.016 4.016 3 H 0.050 0.950 4 N -0.312 5.312 5 C -0.045 4.045 6 C -0.055 4.055 7 C -0.163 4.163 8 C -0.179 4.179 9 C 0.003 3.997 10 C -0.552 4.552 11 H 0.085 0.915 12 C -0.202 4.202 13 N -0.580 5.580 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.065 4.065 19 H 0.109 0.891 20 C -0.205 4.205 21 C -0.074 4.074 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.143 4.143 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.681 -4.774 -24.607 25.335 hybrid contribution 0.985 0.899 1.131 1.748 sum -2.697 -3.875 -23.476 23.946 Atomic orbital electron populations 1.21706 0.94640 1.02056 1.00473 1.21527 0.95915 0.95277 0.88862 0.95029 1.60612 1.34014 1.32929 1.03679 1.21817 0.98928 0.93049 0.90668 1.20486 0.95742 0.95921 0.93328 1.21495 0.97180 0.97312 1.00327 1.21682 0.95432 0.99864 1.00929 1.18998 0.94012 0.93723 0.92973 1.21593 1.42028 0.96728 0.94864 0.91517 1.25942 0.96291 0.95663 1.02297 1.70111 1.50704 1.10755 1.26454 0.85623 0.79261 0.78368 0.78548 1.19180 1.21400 1.19332 1.20246 0.95973 0.99634 0.90636 0.89133 1.21905 0.94007 1.02087 1.02544 1.19800 0.97563 0.94192 0.95837 1.21132 1.00877 0.94730 0.98090 1.21379 0.98169 1.00635 0.94456 1.21427 0.98557 0.95162 0.99992 1.21433 0.99941 0.95144 0.97691 1.21290 0.97825 1.00637 0.94553 0.91930 0.94369 0.92291 0.83227 0.96812 0.92937 0.91264 0.94243 0.95319 0.94512 0.93345 0.91398 0.99921 0.99985 0.93181 0.91255 0.92955 0.91880 0.86697 0.84992 0.84369 0.84206 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.17 71.98 0.66 -2.51 16 2 C 0.09 2.25 2.05 44.92 0.09 2.34 16 3 H 0.03 0.83 7.03 -2.39 -0.02 0.82 16 4 N -0.68 -18.63 5.52 -491.55 -2.71 -21.34 16 5 C 0.08 2.97 4.44 86.30 0.38 3.36 16 6 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 7 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 8 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 9 C 0.04 2.13 4.04 29.85 0.12 2.25 16 10 C -0.51 -28.70 7.65 25.60 0.20 -28.50 16 11 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 12 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 13 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 14 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 C -0.05 -0.89 2.29 -11.54 -0.03 -0.92 16 19 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 20 C -0.15 -2.68 8.77 71.98 0.63 -2.05 16 21 C -0.07 -1.39 3.52 -19.87 -0.07 -1.46 16 22 C -0.13 -2.53 8.71 22.27 0.19 -2.34 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 26 C -0.13 -2.11 9.67 22.27 0.22 -1.89 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.03 7.45 -2.39 -0.02 1.02 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.35 8.71 4.21 -89.69 -0.38 8.34 16 31 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 32 H 0.05 1.97 7.44 -2.38 -0.02 1.96 16 33 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 34 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 35 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.89 6.62 -2.38 -0.02 1.88 16 38 H 0.07 1.96 6.57 -2.39 -0.02 1.94 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 0.99 7.40 -2.39 -0.02 0.97 16 44 H 0.06 1.14 6.21 -2.39 -0.01 1.13 16 45 H 0.11 2.25 7.10 -2.91 -0.02 2.23 16 46 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 48 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 49 H 0.13 1.84 7.95 -2.91 -0.02 1.82 16 Total: -1.00 -64.00 374.50 4.76 -59.23 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.52 Total: 19.59 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 4.65 Total: -46.47 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.43 Total: -79.12 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.00 4.76 -59.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554358621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.064 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds