Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00192 * 2 1 4 4 C 1.38212 * 120.00414 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00135 * 179.97438 * 4 3 2 6 6 C 1.38252 * 119.99783 * 0.02562 * 4 3 2 7 7 C 1.50697 * 120.00216 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46943 * 79.99783 * 7 6 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47206 * 299.99787 * 10 9 8 12 12 C 1.53001 * 109.47323 * 60.00045 * 10 9 8 13 13 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 10 17 17 N 1.31521 * 119.99686 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00356 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46869 * 89.99730 * 18 16 14 20 20 H 1.48492 * 109.47317 * 209.99658 * 18 16 14 21 21 H 1.48499 * 109.46841 * 330.00385 * 18 16 14 22 22 C 1.38221 * 120.00245 * 0.25295 * 6 4 3 23 23 C 1.38206 * 120.00182 * 179.97438 * 2 1 3 24 24 C 1.50707 * 120.00188 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.46862 * 90.00258 * 1 2 3 26 26 H 1.08995 * 109.46689 * 209.99724 * 1 2 3 27 27 H 1.08997 * 109.46918 * 330.00207 * 1 2 3 28 28 H 1.08005 * 119.99388 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46937 * 270.02757 * 5 4 3 30 30 H 1.09002 * 109.46612 * 30.02389 * 5 4 3 31 31 H 1.08998 * 109.46668 * 150.02131 * 5 4 3 32 32 H 1.09004 * 109.46763 * 320.00225 * 7 6 4 33 33 H 1.08995 * 109.47483 * 199.99882 * 7 6 4 34 34 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 35 35 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 36 36 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 37 37 H 1.08999 * 109.47049 * 60.00315 * 11 10 9 38 38 H 1.09005 * 109.47151 * 179.97438 * 11 10 9 39 39 H 1.08998 * 109.47171 * 300.00432 * 11 10 9 40 40 H 1.08991 * 109.46963 * 60.00286 * 12 10 9 41 41 H 1.09005 * 109.47384 * 179.97438 * 12 10 9 42 42 H 1.08999 * 109.47105 * 299.99791 * 12 10 9 43 43 H 1.09001 * 109.46514 * 300.00105 * 13 10 9 44 44 H 1.08998 * 109.46924 * 59.99625 * 13 10 9 45 45 H 0.97004 * 119.99803 * 180.02562 * 17 16 14 46 46 H 1.08001 * 119.99996 * 179.72622 * 22 6 4 47 47 H 1.08996 * 109.47113 * 89.99818 * 24 23 2 48 48 H 1.08997 * 109.47476 * 210.00418 * 24 23 2 49 49 H 1.09001 * 109.46769 * 329.99900 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3340 2.5025 0.0000 6 6 4.2718 0.0001 0.0005 7 6 5.7787 0.0001 0.0005 8 7 6.2684 0.2406 1.3645 9 6 7.7369 0.2480 1.4030 10 6 8.2082 0.5001 2.8365 11 6 7.6787 1.8527 3.3170 12 6 7.6796 -0.6080 3.7496 13 6 9.7377 0.5084 2.8766 14 6 10.2019 0.7574 4.2885 15 1 9.4785 0.8954 5.0784 16 6 11.5502 0.8079 4.5720 17 7 11.9554 1.0247 5.8044 18 14 12.8016 0.5684 3.2060 19 1 13.1325 1.8839 2.6016 20 1 14.0338 -0.0434 3.7650 21 1 12.2333 -0.3255 2.1653 22 6 3.5807 -1.1969 -0.0053 23 6 2.1981 -1.1969 0.0005 24 6 1.4446 -2.5021 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.5156 2.8167 -1.0278 30 1 3.7448 3.2624 0.5134 31 1 5.2863 2.3724 0.5139 32 1 6.1420 0.7873 -0.6600 33 1 6.1421 -0.9656 -0.3509 34 1 5.8929 1.0998 1.7372 35 1 8.1141 -0.7158 1.0611 36 1 8.1134 1.0371 0.7522 37 1 6.5891 1.8473 3.2885 38 1 8.0141 2.0322 4.3386 39 1 8.0552 2.6422 2.6666 40 1 8.0570 -1.5716 3.4073 41 1 8.0158 -0.4287 4.7708 42 1 6.5900 -0.6135 3.7210 43 1 10.1153 -0.4551 2.5341 44 1 10.1139 1.2981 2.2262 45 1 12.9040 1.0606 6.0038 46 1 4.1208 -2.1322 -0.0098 47 1 1.2634 -2.8169 -1.0271 48 1 2.0335 -3.2616 0.5148 49 1 0.4920 -2.3716 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554719628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = -7.456597 kcal Electronic energy + Delta-G solvation = -23133.278999 eV Core-core repulsion = 20058.777364 eV Total energy + Delta-G solvation = -3074.501635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04470 -37.76408 -35.48970 -33.55218 -32.50953 -31.82366 -29.54053 -28.41395 -27.43235 -26.35201 -25.73728 -24.81925 -23.42511 -22.11490 -21.72834 -19.51646 -17.83712 -16.79593 -16.44110 -15.66060 -15.18830 -14.95911 -14.64232 -14.39032 -14.07653 -13.81590 -13.51796 -13.35074 -13.04139 -13.01889 -12.93001 -12.74081 -12.57845 -12.22592 -12.20989 -12.04834 -11.89892 -11.85732 -11.36032 -11.08392 -11.00826 -10.90115 -10.83697 -10.77952 -10.47245 -10.30886 -9.79416 -9.65900 -9.29324 -8.88751 -8.73718 -8.48054 -8.41987 -8.08802 -5.98347 -3.94353 1.23356 1.33157 3.32976 3.40852 3.44548 3.56008 4.49710 4.51934 4.62460 4.67731 4.80413 4.85181 4.98404 5.08306 5.25942 5.30397 5.34645 5.37816 5.40512 5.44731 5.49824 5.57882 5.62337 5.64653 5.67821 5.72120 5.74599 5.81667 5.90173 6.10118 6.15761 6.16674 6.27545 6.39051 6.43907 6.53821 6.62259 6.63578 6.71083 6.82791 6.96976 7.10376 7.16153 7.20826 7.31518 7.35644 7.48700 7.64903 7.87304 8.61819 9.07817 9.64820 11.14807 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.002966 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.531794 B = 9436.690908 C = 9595.849920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.082 4.082 5 C -0.118 4.118 6 C -0.076 4.076 7 C 0.095 3.905 8 N -0.679 5.679 9 C 0.066 3.934 10 C -0.048 4.048 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.267 1.267 22 C -0.094 4.094 23 C -0.095 4.095 24 C -0.115 4.115 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.340 0.660 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.015 0.985 44 H 0.008 0.992 45 H 0.261 0.739 46 H 0.122 0.878 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.755 -1.876 -14.667 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.082 4.082 5 C -0.175 4.175 6 C -0.076 4.076 7 C -0.033 4.033 8 N -0.312 5.312 9 C -0.062 4.062 10 C -0.049 4.049 11 C -0.188 4.188 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.191 1.191 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.172 4.172 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.629 -2.517 -14.369 26.088 hybrid contribution 1.132 0.789 -1.096 1.762 sum -20.497 -1.728 -15.465 25.735 Atomic orbital electron populations 1.20831 0.91567 1.02718 1.02056 1.19684 0.95720 0.92664 1.00871 1.20812 0.93349 0.97331 1.02109 1.19734 0.93642 0.94832 1.00022 1.20853 1.00155 0.94239 1.02211 1.19663 0.95239 0.92544 1.00173 1.20858 0.90176 1.01310 0.90988 1.60653 1.08980 1.42428 1.19168 1.22171 0.85906 1.00071 0.98096 1.20414 0.97254 0.95343 0.91853 1.21790 0.97859 0.96358 1.02832 1.21607 0.98959 0.96945 0.99960 1.19632 0.90537 0.96079 0.97965 1.21140 0.92440 1.47912 0.92907 0.90417 1.25021 0.98512 0.94967 0.95131 1.69916 1.15254 1.50761 1.18645 0.86846 0.81152 0.78670 0.82987 1.20538 1.21567 1.19124 1.20882 0.93153 0.97626 0.99613 1.19703 0.93673 0.94761 1.01337 1.20830 1.00051 0.94251 1.02041 0.91435 0.91245 0.91792 0.86357 0.91293 0.91406 0.91534 0.94637 0.90533 0.83913 0.91505 0.95900 0.94652 0.91115 0.94158 0.94235 0.92160 0.93641 0.96700 0.97409 0.92913 0.86036 0.91460 0.91589 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.61 36.01 0.35 -0.51 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.25 9.36 -39.58 -0.37 -1.62 16 4 C -0.08 -0.93 5.87 -104.63 -0.61 -1.55 16 5 C -0.12 -1.17 9.23 36.01 0.33 -0.84 16 6 C -0.08 -0.92 5.39 -104.62 -0.56 -1.49 16 7 C 0.10 1.20 5.04 -4.98 -0.03 1.17 16 8 N -0.68 -9.83 5.68 -115.06 -0.65 -10.48 16 9 C 0.07 1.09 4.65 -3.82 -0.02 1.07 16 10 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 11 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 12 C -0.12 -2.30 8.07 37.16 0.30 -2.00 16 13 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 14 C -0.51 -14.04 8.20 -34.44 -0.28 -14.32 16 15 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C -0.09 -1.10 9.33 -39.58 -0.37 -1.47 16 23 C -0.09 -1.00 5.88 -104.62 -0.62 -1.62 16 24 C -0.12 -0.92 9.60 36.01 0.35 -0.57 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.72 5.27 -51.93 -0.27 0.44 16 32 H 0.04 0.43 7.28 -51.93 -0.38 0.05 16 33 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 34 H 0.34 4.86 5.02 -39.29 -0.20 4.66 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 38 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 42 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 43 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 46 H 0.12 1.31 8.03 -52.49 -0.42 0.89 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 49 H 0.07 0.47 5.95 -51.93 -0.31 0.16 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -30.28 372.25 -9.69 -39.96 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.61 Total: 1.72 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -2.13 Total: -26.87 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.12 Total: -37.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.28 -9.69 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554719628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.508 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds