Wall clock time and date at job start Tue Mar 31 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00192 * 2 1 4 4 C 1.38212 * 120.00414 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00135 * 179.97438 * 4 3 2 6 6 C 1.38252 * 119.99783 * 0.02562 * 4 3 2 7 7 C 1.50697 * 120.00216 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46943 * 79.99783 * 7 6 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47206 * 299.99787 * 10 9 8 12 12 C 1.53001 * 109.47323 * 60.00045 * 10 9 8 13 13 C 1.53004 * 109.47360 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47387 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99821 * 179.97438 * 14 13 10 17 17 N 1.31521 * 119.99686 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00356 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46869 * 89.99730 * 18 16 14 20 20 H 1.48492 * 109.47317 * 209.99658 * 18 16 14 21 21 H 1.48499 * 109.46841 * 330.00385 * 18 16 14 22 22 C 1.38221 * 120.00245 * 0.25295 * 6 4 3 23 23 C 1.38206 * 120.00182 * 179.97438 * 2 1 3 24 24 C 1.50707 * 120.00188 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.46862 * 90.00258 * 1 2 3 26 26 H 1.08995 * 109.46689 * 209.99724 * 1 2 3 27 27 H 1.08997 * 109.46918 * 330.00207 * 1 2 3 28 28 H 1.08005 * 119.99388 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46937 * 270.02757 * 5 4 3 30 30 H 1.09002 * 109.46612 * 30.02389 * 5 4 3 31 31 H 1.08998 * 109.46668 * 150.02131 * 5 4 3 32 32 H 1.09004 * 109.46763 * 320.00225 * 7 6 4 33 33 H 1.08995 * 109.47483 * 199.99882 * 7 6 4 34 34 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 35 35 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 36 36 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 37 37 H 1.08999 * 109.47049 * 60.00315 * 11 10 9 38 38 H 1.09005 * 109.47151 * 179.97438 * 11 10 9 39 39 H 1.08998 * 109.47171 * 300.00432 * 11 10 9 40 40 H 1.08991 * 109.46963 * 60.00286 * 12 10 9 41 41 H 1.09005 * 109.47384 * 179.97438 * 12 10 9 42 42 H 1.08999 * 109.47105 * 299.99791 * 12 10 9 43 43 H 1.09001 * 109.46514 * 300.00105 * 13 10 9 44 44 H 1.08998 * 109.46924 * 59.99625 * 13 10 9 45 45 H 0.97004 * 119.99803 * 180.02562 * 17 16 14 46 46 H 1.08001 * 119.99996 * 179.72622 * 22 6 4 47 47 H 1.08996 * 109.47113 * 89.99818 * 24 23 2 48 48 H 1.08997 * 109.47476 * 210.00418 * 24 23 2 49 49 H 1.09001 * 109.46769 * 329.99900 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3340 2.5025 0.0000 6 6 4.2718 0.0001 0.0005 7 6 5.7787 0.0001 0.0005 8 7 6.2684 0.2406 1.3645 9 6 7.7369 0.2480 1.4030 10 6 8.2082 0.5001 2.8365 11 6 7.6787 1.8527 3.3170 12 6 7.6796 -0.6080 3.7496 13 6 9.7377 0.5084 2.8766 14 6 10.2019 0.7574 4.2885 15 1 9.4785 0.8954 5.0784 16 6 11.5502 0.8079 4.5720 17 7 11.9554 1.0247 5.8044 18 14 12.8016 0.5684 3.2060 19 1 13.1325 1.8839 2.6016 20 1 14.0338 -0.0434 3.7650 21 1 12.2333 -0.3255 2.1653 22 6 3.5807 -1.1969 -0.0053 23 6 2.1981 -1.1969 0.0005 24 6 1.4446 -2.5021 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.5156 2.8167 -1.0278 30 1 3.7448 3.2624 0.5134 31 1 5.2863 2.3724 0.5139 32 1 6.1420 0.7873 -0.6600 33 1 6.1421 -0.9656 -0.3509 34 1 5.8929 1.0998 1.7372 35 1 8.1141 -0.7158 1.0611 36 1 8.1134 1.0371 0.7522 37 1 6.5891 1.8473 3.2885 38 1 8.0141 2.0322 4.3386 39 1 8.0552 2.6422 2.6666 40 1 8.0570 -1.5716 3.4073 41 1 8.0158 -0.4287 4.7708 42 1 6.5900 -0.6135 3.7210 43 1 10.1153 -0.4551 2.5341 44 1 10.1139 1.2981 2.2262 45 1 12.9040 1.0606 6.0038 46 1 4.1208 -2.1322 -0.0098 47 1 1.2634 -2.8169 -1.0271 48 1 2.0335 -3.2616 0.5148 49 1 0.4920 -2.3716 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554719628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:06 Heat of formation + Delta-G solvation = -22.855843 kcal Electronic energy + Delta-G solvation = -23133.946761 eV Core-core repulsion = 20058.777364 eV Total energy + Delta-G solvation = -3075.169397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85026 -39.19009 -36.58106 -34.80548 -34.03159 -32.98935 -30.28034 -29.84643 -28.79483 -27.93834 -26.78433 -25.87986 -24.59302 -23.37299 -22.90849 -20.35362 -19.40992 -18.86834 -17.35308 -16.64764 -16.40941 -16.11465 -15.81372 -15.63383 -15.25805 -15.04475 -14.86343 -14.47255 -14.21597 -13.99309 -13.88424 -13.80277 -13.65144 -13.54247 -13.36477 -13.04334 -12.86426 -12.78133 -12.74688 -12.59843 -12.41598 -12.21268 -12.14235 -12.03762 -11.74257 -11.72105 -11.59398 -11.37237 -10.99334 -10.81967 -10.69694 -9.56758 -9.31815 -9.10056 -8.21472 -6.21800 0.43079 0.52470 1.35592 1.37837 1.48930 2.39764 2.73691 3.13511 3.45587 3.84630 3.90721 4.00962 4.08582 4.11536 4.17563 4.28935 4.31396 4.35025 4.54161 4.60801 4.65960 4.74399 4.75445 4.76279 4.78175 4.80022 4.90605 4.90998 4.92851 4.99312 5.02811 5.08100 5.10091 5.16279 5.17502 5.34902 5.36366 5.43745 5.46495 5.51481 5.59864 5.61388 5.74552 5.76857 5.81116 5.82837 6.09297 6.22188 6.41892 6.49827 6.85541 7.40603 8.94839 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.002966 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.531794 B = 9436.690908 C = 9595.849920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.093 4.093 5 C -0.116 4.116 6 C -0.093 4.093 7 C 0.101 3.899 8 N -0.681 5.681 9 C 0.078 3.922 10 C -0.048 4.048 11 C -0.124 4.124 12 C -0.108 4.108 13 C -0.003 4.003 14 C -0.503 4.503 15 H 0.044 0.956 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.249 1.249 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.114 4.114 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.123 0.877 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.326 -2.002 -17.120 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.093 4.093 5 C -0.172 4.172 6 C -0.094 4.094 7 C -0.027 4.027 8 N -0.315 5.315 9 C -0.051 4.051 10 C -0.048 4.048 11 C -0.181 4.181 12 C -0.165 4.165 13 C -0.040 4.040 14 C -0.541 4.541 15 H 0.062 0.938 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.173 1.173 22 C -0.128 4.128 23 C -0.106 4.106 24 C -0.170 4.170 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.141 0.859 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.224 -2.647 -16.840 28.809 hybrid contribution 1.492 0.830 -0.280 1.731 sum -21.732 -1.816 -17.119 27.724 Atomic orbital electron populations 1.20881 0.89607 1.03556 1.02993 1.20071 0.97297 0.92413 0.99820 1.21096 0.93280 0.98327 1.01883 1.19949 0.94249 0.95094 1.00035 1.20856 0.99661 0.93949 1.02781 1.19692 0.94923 0.93160 1.01582 1.20820 0.90654 1.01503 0.89769 1.60591 1.07513 1.42569 1.20791 1.21908 0.87314 1.00332 0.95499 1.20346 0.94649 0.95685 0.94151 1.21691 0.99519 0.96119 1.00794 1.21498 0.99934 0.97002 0.98100 1.19594 0.93546 0.95853 0.95054 1.21425 0.91893 1.46444 0.94359 0.93826 1.25933 1.00955 0.95101 0.97558 1.70072 1.15733 1.52847 1.21077 0.85787 0.78269 0.79237 0.80108 1.19527 1.21501 1.17260 1.21055 0.93947 0.97654 1.00169 1.20030 0.93551 0.96098 1.00915 1.20866 1.00250 0.93003 1.02887 0.90335 0.90387 0.91021 0.84749 0.90442 0.90362 0.92447 0.93987 0.90444 0.83741 0.91449 0.95174 0.92046 0.94441 0.93443 0.94296 0.95327 0.91932 0.96816 0.96879 0.92904 0.85900 0.90408 0.91624 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.61 71.24 0.68 -0.70 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.13 -2.46 9.36 22.27 0.21 -2.25 16 4 C -0.09 -1.96 5.87 -19.87 -0.12 -2.08 16 5 C -0.12 -2.08 9.23 71.24 0.66 -1.42 16 6 C -0.09 -2.14 5.39 -19.87 -0.11 -2.24 16 7 C 0.10 2.35 5.04 85.56 0.43 2.78 16 8 N -0.68 -18.43 5.68 -517.93 -2.94 -21.37 16 9 C 0.08 2.43 4.65 86.30 0.40 2.83 16 10 C -0.05 -1.83 0.60 -52.18 -0.03 -1.86 16 11 C -0.12 -4.54 7.89 71.98 0.57 -3.97 16 12 C -0.11 -4.22 8.07 71.98 0.58 -3.64 16 13 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 14 C -0.50 -28.53 8.20 25.60 0.21 -28.32 16 15 H 0.04 2.72 5.92 -2.91 -0.02 2.70 16 16 C 0.00 0.01 5.47 84.65 0.46 0.47 16 17 N -0.96 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 22 C -0.11 -2.43 9.33 22.27 0.21 -2.22 16 23 C -0.11 -2.07 5.88 -19.86 -0.12 -2.18 16 24 C -0.11 -1.59 9.60 71.24 0.68 -0.91 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.81 5.95 -2.39 -0.01 0.80 16 27 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 28 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 31 H 0.06 1.13 5.27 -2.39 -0.01 1.11 16 32 H 0.04 0.93 7.28 -2.39 -0.02 0.91 16 33 H 0.08 1.77 8.00 -2.39 -0.02 1.75 16 34 H 0.34 9.07 5.02 -89.69 -0.45 8.62 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.90 6.57 -2.39 -0.02 1.89 16 38 H 0.04 1.60 6.62 -2.38 -0.02 1.59 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.03 1.26 6.62 -2.38 -0.02 1.25 16 42 H 0.06 2.20 7.60 -2.39 -0.02 2.18 16 43 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 44 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 45 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.12 2.55 8.03 -2.91 -0.02 2.53 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 49 H 0.08 0.91 5.95 -2.39 -0.01 0.90 16 Total: -1.00 -65.84 372.25 4.35 -61.49 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.41 Total: 20.91 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 4.70 Total: -47.61 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.64 Total: -81.65 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -65.84 4.35 -61.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554719628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.634 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds