Wall clock time and date at job start Tue Mar 31 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47082 * 119.99832 * 2 1 3 5 5 C 1.50700 * 109.47006 * 65.00239 * 4 2 1 6 6 C 1.38238 * 119.99788 * 269.72912 * 5 4 2 7 7 C 1.38233 * 119.99974 * 179.79256 * 6 5 4 8 8 C 1.38234 * 120.00059 * 0.45327 * 7 6 5 9 9 C 1.50700 * 120.00354 * 179.79257 * 8 7 6 10 10 H 1.08996 * 109.47455 * 199.97895 * 9 8 7 11 11 N 1.46900 * 109.47183 * 319.98438 * 9 8 7 12 12 C 1.46898 * 110.99580 * 277.66224 * 11 9 8 13 13 C 1.50704 * 109.47059 * 185.23288 * 12 11 9 14 14 H 1.08006 * 119.99619 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00206 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47127 * 90.00100 * 17 15 13 19 19 H 1.48500 * 109.47381 * 209.99944 * 17 15 13 20 20 H 1.48505 * 109.47227 * 330.00060 * 17 15 13 21 21 C 1.53007 * 109.46667 * 79.98100 * 9 8 7 22 22 C 1.52992 * 109.47133 * 64.28373 * 21 9 8 23 23 C 1.53005 * 109.46813 * 184.27953 * 21 9 8 24 24 C 1.38237 * 119.99788 * 359.77585 * 8 7 6 25 25 C 1.38231 * 120.00350 * 89.99735 * 5 4 2 26 26 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 300.00063 * 1 2 3 28 28 H 1.09001 * 109.46877 * 59.99924 * 1 2 3 29 29 H 1.08992 * 109.47232 * 239.99963 * 2 1 3 30 30 H 1.09000 * 109.46724 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46755 * 300.00167 * 3 2 1 32 32 H 1.09001 * 109.47196 * 59.99978 * 3 2 1 33 33 H 1.08995 * 109.47097 * 185.00236 * 4 2 1 34 34 H 1.09004 * 109.47062 * 305.00383 * 4 2 1 35 35 H 1.08004 * 120.00170 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.00072 * 180.25370 * 7 6 5 37 37 H 1.00897 * 111.00199 * 41.61713 * 11 9 8 38 38 H 1.08998 * 109.47486 * 305.23343 * 12 11 9 39 39 H 1.08997 * 109.47345 * 65.23420 * 12 11 9 40 40 H 0.97001 * 120.00137 * 179.97438 * 16 15 13 41 41 H 1.08989 * 109.47249 * 304.27956 * 21 9 8 42 42 H 1.09000 * 109.47796 * 59.99634 * 22 21 9 43 43 H 1.09001 * 109.47351 * 179.97438 * 22 21 9 44 44 H 1.09007 * 109.47189 * 299.99722 * 22 21 9 45 45 H 1.08998 * 109.46786 * 56.41962 * 23 21 9 46 46 H 1.08998 * 109.47154 * 176.41500 * 23 21 9 47 47 H 1.08994 * 109.47296 * 296.41796 * 23 21 9 48 48 H 1.08006 * 119.99987 * 179.97438 * 24 8 7 49 49 H 1.08005 * 119.99843 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4381 -2.5828 1.7323 7 6 0.0704 -3.9140 1.6732 8 6 0.9103 -4.8373 1.0789 9 6 0.5116 -6.2893 1.0185 10 1 1.3977 -6.9029 0.8558 11 7 -0.1256 -6.6752 2.2846 12 6 0.8817 -6.9973 3.3041 13 6 0.1955 -7.5104 4.5439 14 1 -0.8813 -7.5896 4.5714 15 6 0.9422 -7.8795 5.6425 16 7 2.2534 -7.7845 5.6084 17 14 0.0915 -8.5148 7.1794 18 1 -0.0520 -9.9903 7.0918 19 1 0.9022 -8.1664 8.3738 20 1 -1.2521 -7.8927 7.2945 21 6 -0.4733 -6.5003 -0.1332 22 6 0.2237 -6.2003 -1.4617 23 6 -0.9600 -7.9508 -0.1288 24 6 2.1157 -4.4285 0.5397 25 6 2.4814 -3.0966 0.5950 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1263 -0.6443 1.2952 34 1 1.6053 -0.2617 2.1370 35 1 -0.2161 -1.8622 2.2006 36 1 -0.8715 -4.2333 2.0941 37 1 -0.7509 -5.9531 2.6095 38 1 1.5564 -7.7621 2.9195 39 1 1.4509 -6.1005 3.5487 40 1 2.7788 -8.0439 6.3815 41 1 -1.3247 -5.8310 -0.0104 42 1 1.0752 -6.8696 -1.5846 43 1 -0.4778 -6.3510 -2.2823 44 1 0.5706 -5.1669 -1.4649 45 1 -1.3998 -8.1835 0.8410 46 1 -1.7092 -8.0851 -0.9091 47 1 -0.1179 -8.6172 -0.3151 48 1 2.7721 -5.1499 0.0757 49 1 3.4233 -2.7772 0.1739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557203365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:47 Heat of formation + Delta-G solvation = -13.881541 kcal Electronic energy + Delta-G solvation = -23442.494165 eV Core-core repulsion = 20367.713923 eV Total energy + Delta-G solvation = -3074.780242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.72960 -37.44598 -35.59271 -33.69132 -32.09352 -30.99226 -30.60648 -27.56769 -27.27838 -26.83615 -25.68009 -23.79011 -22.64770 -21.34511 -20.87385 -20.02385 -19.31219 -16.62414 -16.12133 -15.60782 -14.99498 -14.71149 -14.57276 -14.41589 -14.23412 -14.01366 -13.73095 -13.24237 -13.06888 -12.87133 -12.36761 -12.32091 -12.25174 -12.03450 -11.90148 -11.81332 -11.73856 -11.34912 -11.29582 -11.07646 -10.86246 -10.81941 -10.76165 -10.72466 -10.59705 -10.42942 -10.21711 -10.16917 -9.83938 -9.15210 -8.58495 -8.45216 -8.13156 -7.28460 -5.99123 -4.00821 1.65417 1.72126 3.33940 3.39641 3.43306 4.03498 4.45473 4.70890 4.75126 4.85157 5.03186 5.08827 5.16374 5.25496 5.30657 5.36569 5.41325 5.43600 5.50930 5.53816 5.55202 5.69113 5.75745 5.78799 5.79890 5.82597 5.93604 5.96618 5.98918 6.07649 6.16806 6.18145 6.21639 6.23372 6.29161 6.38400 6.40667 6.48418 6.70613 6.74968 6.86484 6.94562 6.99641 7.30078 7.33375 7.48570 7.82608 8.17120 8.42475 8.63294 9.08169 9.63693 11.11718 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.004147 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.918651 B = 6749.466686 C = 8028.583713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.092 4.092 9 C 0.126 3.874 10 H 0.078 0.922 11 N -0.676 5.676 12 C 0.196 3.804 13 C -0.511 4.511 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.077 4.077 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.328 0.672 38 H 0.025 0.975 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.038 0.962 47 H 0.046 0.954 48 H 0.116 0.884 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 13.720 -13.876 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.094 4.094 9 C 0.015 3.985 10 H 0.096 0.904 11 N -0.305 5.305 12 C 0.070 3.930 13 C -0.549 4.549 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.096 4.096 22 C -0.204 4.204 23 C -0.193 4.193 24 C -0.130 4.130 25 C -0.137 4.137 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.134 0.866 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.788 13.004 -13.921 19.133 hybrid contribution 0.156 0.519 1.216 1.331 sum -1.632 13.522 -12.704 18.626 Atomic orbital electron populations 1.21915 0.95196 1.02396 1.01225 1.21074 0.96145 0.95557 0.98103 1.21857 1.00859 0.96105 1.01638 1.20635 1.00829 0.91570 0.98067 1.19702 0.95021 0.95061 0.99430 1.20911 0.96323 0.95693 1.00089 1.20931 0.99848 0.92876 0.99360 1.20868 0.94299 0.97653 0.96560 1.20695 0.96713 0.88858 0.92269 0.90405 1.60873 1.21121 1.44786 1.03761 1.19543 0.89838 0.94972 0.88674 1.21175 0.93670 1.42605 0.97488 0.92047 1.24976 0.94808 0.95974 0.98803 1.69967 1.04662 1.48579 1.30505 0.86519 0.79397 0.79162 0.82427 1.20674 1.21374 1.19881 1.21027 0.97503 0.97784 0.93295 1.21868 1.00276 1.01371 0.96916 1.21691 1.00151 0.95162 1.02313 1.21003 0.96386 0.95579 1.00027 1.20916 0.99159 0.93162 1.00434 0.91882 0.92869 0.93145 0.91245 0.92784 0.92818 0.92720 0.91339 0.91264 0.86660 0.86197 0.85395 0.95687 0.99424 0.93010 0.91885 0.92974 0.93228 0.92816 0.90438 0.94311 0.93500 0.86578 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.78 37.16 0.33 -1.08 16 2 C -0.09 -0.85 2.91 -90.61 -0.26 -1.11 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.07 -0.79 4.84 -27.88 -0.13 -0.93 16 5 C -0.09 -1.23 4.70 -104.62 -0.49 -1.73 16 6 C -0.11 -1.60 7.98 -39.58 -0.32 -1.92 16 7 C -0.11 -1.79 9.15 -39.58 -0.36 -2.15 16 8 C -0.09 -1.53 3.90 -104.62 -0.41 -1.94 16 9 C 0.13 2.21 1.80 -68.86 -0.12 2.09 16 10 H 0.08 1.48 7.62 -51.93 -0.40 1.08 16 11 N -0.68 -14.18 5.16 -109.22 -0.56 -14.74 16 12 C 0.20 5.15 5.25 -4.98 -0.03 5.12 16 13 C -0.51 -14.53 9.36 -34.44 -0.32 -14.85 16 14 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.08 -1.14 2.66 -90.62 -0.24 -1.38 16 22 C -0.15 -1.87 8.89 37.15 0.33 -1.54 16 23 C -0.14 -2.04 9.05 37.16 0.34 -1.71 16 24 C -0.11 -1.72 8.75 -39.58 -0.35 -2.07 16 25 C -0.12 -1.66 9.70 -39.59 -0.38 -2.04 16 26 H 0.06 0.67 6.28 -51.93 -0.33 0.34 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.12 1.44 8.05 -52.48 -0.42 1.02 16 36 H 0.12 1.87 6.51 -52.48 -0.34 1.53 16 37 H 0.33 6.64 6.47 -39.29 -0.25 6.38 16 38 H 0.03 0.71 7.93 -51.93 -0.41 0.30 16 39 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.93 8.14 -51.94 -0.42 0.51 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.69 6.74 -51.93 -0.35 0.34 16 45 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.12 1.67 8.04 -52.48 -0.42 1.25 16 49 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -29.82 384.60 -10.42 -40.23 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -9.18 Total: 4.75 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -2.18 Total: -26.53 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.17 Total: -41.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.82 -10.42 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557203365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.349 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds