Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47082 * 119.99832 * 2 1 3 5 5 C 1.50700 * 109.47006 * 65.00239 * 4 2 1 6 6 C 1.38238 * 119.99788 * 269.72912 * 5 4 2 7 7 C 1.38233 * 119.99974 * 179.79256 * 6 5 4 8 8 C 1.38234 * 120.00059 * 0.45327 * 7 6 5 9 9 C 1.50700 * 120.00354 * 179.79257 * 8 7 6 10 10 H 1.08996 * 109.47455 * 199.97895 * 9 8 7 11 11 N 1.46900 * 109.47183 * 319.98438 * 9 8 7 12 12 C 1.46898 * 110.99580 * 277.66224 * 11 9 8 13 13 C 1.50704 * 109.47059 * 185.23288 * 12 11 9 14 14 H 1.08006 * 119.99619 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00206 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47127 * 90.00100 * 17 15 13 19 19 H 1.48500 * 109.47381 * 209.99944 * 17 15 13 20 20 H 1.48505 * 109.47227 * 330.00060 * 17 15 13 21 21 C 1.53007 * 109.46667 * 79.98100 * 9 8 7 22 22 C 1.52992 * 109.47133 * 64.28373 * 21 9 8 23 23 C 1.53005 * 109.46813 * 184.27953 * 21 9 8 24 24 C 1.38237 * 119.99788 * 359.77585 * 8 7 6 25 25 C 1.38231 * 120.00350 * 89.99735 * 5 4 2 26 26 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 300.00063 * 1 2 3 28 28 H 1.09001 * 109.46877 * 59.99924 * 1 2 3 29 29 H 1.08992 * 109.47232 * 239.99963 * 2 1 3 30 30 H 1.09000 * 109.46724 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46755 * 300.00167 * 3 2 1 32 32 H 1.09001 * 109.47196 * 59.99978 * 3 2 1 33 33 H 1.08995 * 109.47097 * 185.00236 * 4 2 1 34 34 H 1.09004 * 109.47062 * 305.00383 * 4 2 1 35 35 H 1.08004 * 120.00170 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.00072 * 180.25370 * 7 6 5 37 37 H 1.00897 * 111.00199 * 41.61713 * 11 9 8 38 38 H 1.08998 * 109.47486 * 305.23343 * 12 11 9 39 39 H 1.08997 * 109.47345 * 65.23420 * 12 11 9 40 40 H 0.97001 * 120.00137 * 179.97438 * 16 15 13 41 41 H 1.08989 * 109.47249 * 304.27956 * 21 9 8 42 42 H 1.09000 * 109.47796 * 59.99634 * 22 21 9 43 43 H 1.09001 * 109.47351 * 179.97438 * 22 21 9 44 44 H 1.09007 * 109.47189 * 299.99722 * 22 21 9 45 45 H 1.08998 * 109.46786 * 56.41962 * 23 21 9 46 46 H 1.08998 * 109.47154 * 176.41500 * 23 21 9 47 47 H 1.08994 * 109.47296 * 296.41796 * 23 21 9 48 48 H 1.08006 * 119.99987 * 179.97438 * 24 8 7 49 49 H 1.08005 * 119.99843 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4381 -2.5828 1.7323 7 6 0.0704 -3.9140 1.6732 8 6 0.9103 -4.8373 1.0789 9 6 0.5116 -6.2893 1.0185 10 1 1.3977 -6.9029 0.8558 11 7 -0.1256 -6.6752 2.2846 12 6 0.8817 -6.9973 3.3041 13 6 0.1955 -7.5104 4.5439 14 1 -0.8813 -7.5896 4.5714 15 6 0.9422 -7.8795 5.6425 16 7 2.2534 -7.7845 5.6084 17 14 0.0915 -8.5148 7.1794 18 1 -0.0520 -9.9903 7.0918 19 1 0.9022 -8.1664 8.3738 20 1 -1.2521 -7.8927 7.2945 21 6 -0.4733 -6.5003 -0.1332 22 6 0.2237 -6.2003 -1.4617 23 6 -0.9600 -7.9508 -0.1288 24 6 2.1157 -4.4285 0.5397 25 6 2.4814 -3.0966 0.5950 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1263 -0.6443 1.2952 34 1 1.6053 -0.2617 2.1370 35 1 -0.2161 -1.8622 2.2006 36 1 -0.8715 -4.2333 2.0941 37 1 -0.7509 -5.9531 2.6095 38 1 1.5564 -7.7621 2.9195 39 1 1.4509 -6.1005 3.5487 40 1 2.7788 -8.0439 6.3815 41 1 -1.3247 -5.8310 -0.0104 42 1 1.0752 -6.8696 -1.5846 43 1 -0.4778 -6.3510 -2.2823 44 1 0.5706 -5.1669 -1.4649 45 1 -1.3998 -8.1835 0.8410 46 1 -1.7092 -8.0851 -0.9091 47 1 -0.1179 -8.6172 -0.3151 48 1 2.7721 -5.1499 0.0757 49 1 3.4233 -2.7772 0.1739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557203365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -27.991748 kcal Electronic energy + Delta-G solvation = -23443.106029 eV Core-core repulsion = 20367.713923 eV Total energy + Delta-G solvation = -3075.392106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93643 -38.64085 -36.60811 -35.53730 -33.88828 -32.20495 -31.81247 -29.16480 -28.06339 -27.96738 -27.09711 -25.22623 -24.05317 -23.02413 -22.05289 -20.91884 -20.58292 -18.53937 -17.62677 -16.79270 -16.52009 -16.11414 -15.94441 -15.45616 -15.32029 -15.23885 -14.93694 -14.59696 -14.26734 -14.21402 -13.96210 -13.62118 -13.31385 -13.21053 -13.04816 -12.92300 -12.86511 -12.81195 -12.72502 -12.56215 -12.34125 -12.09726 -11.98077 -11.79410 -11.72535 -11.63162 -11.51354 -11.45781 -11.41017 -11.15668 -10.64973 -9.76685 -9.34878 -9.06530 -8.20967 -6.32171 0.47437 0.53612 1.39926 1.41851 1.52931 2.39768 2.86316 3.11837 3.55410 3.74177 3.88157 3.91815 4.08008 4.10926 4.14821 4.22576 4.28222 4.39944 4.51002 4.51977 4.62029 4.72121 4.78829 4.83741 4.86993 4.88113 4.92134 4.96916 5.06339 5.08478 5.09651 5.11159 5.14407 5.20537 5.21982 5.27419 5.32915 5.35213 5.45858 5.48720 5.50706 5.56884 5.60758 5.68184 5.75491 5.75801 6.05766 6.16595 6.48581 6.73974 6.90093 7.38576 8.90188 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.004147 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.918651 B = 6749.466686 C = 8028.583713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.072 4.072 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.128 4.128 8 C -0.111 4.111 9 C 0.128 3.872 10 H 0.056 0.944 11 N -0.671 5.671 12 C 0.219 3.781 13 C -0.531 4.531 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.263 1.263 21 C -0.070 4.070 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.332 0.668 38 H -0.007 1.007 39 H -0.045 1.045 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.120 0.880 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 15.141 -14.336 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.109 4.109 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.147 4.147 8 C -0.113 4.113 9 C 0.018 3.982 10 H 0.074 0.926 11 N -0.300 5.300 12 C 0.091 3.909 13 C -0.569 4.569 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.089 4.089 22 C -0.196 4.196 23 C -0.190 4.190 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.011 0.989 39 H -0.027 1.027 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.138 0.862 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.558 14.435 -14.408 20.555 hybrid contribution 0.423 0.128 1.302 1.375 sum -2.136 14.563 -13.105 19.708 Atomic orbital electron populations 1.21908 0.95257 1.01575 1.01956 1.21036 0.96048 0.96362 0.97029 1.21827 1.01182 0.94914 1.02222 1.20694 1.01452 0.89711 0.99069 1.20049 0.94288 0.96554 0.97919 1.21139 0.97019 0.95229 0.99945 1.21024 0.99929 0.93789 0.99952 1.20750 0.95361 0.96884 0.98268 1.20690 0.96556 0.89557 0.91411 0.92588 1.60768 1.19959 1.45647 1.03673 1.19081 0.89917 0.92412 0.89493 1.21537 0.93939 1.42906 0.98549 0.91811 1.25939 0.95455 0.95929 1.02377 1.70104 1.06328 1.49377 1.31672 0.85363 0.78566 0.78685 0.77862 1.19862 1.20783 1.18679 1.20983 0.96975 0.97750 0.93224 1.21787 1.00531 1.01279 0.96002 1.21651 1.00470 0.95091 1.01784 1.21152 0.96070 0.96663 1.00391 1.21211 1.00118 0.92546 1.00126 0.93420 0.92393 0.92228 0.91660 0.92290 0.92022 0.92384 0.90499 0.90796 0.84969 0.86533 0.84865 0.98872 1.02687 0.92756 0.91516 0.92969 0.91154 0.92899 0.92922 0.91726 0.94063 0.86206 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.78 71.98 0.63 -1.89 16 2 C -0.09 -1.43 2.91 -10.79 -0.03 -1.46 16 3 C -0.14 -1.89 9.19 71.99 0.66 -1.23 16 4 C -0.07 -1.40 4.84 29.85 0.14 -1.26 16 5 C -0.09 -2.26 4.70 -19.87 -0.09 -2.35 16 6 C -0.12 -3.23 7.98 22.27 0.18 -3.06 16 7 C -0.13 -4.18 9.15 22.27 0.20 -3.97 16 8 C -0.11 -3.79 3.90 -19.87 -0.08 -3.87 16 9 C 0.13 4.70 1.80 44.17 0.08 4.78 16 10 H 0.06 2.27 7.62 -2.39 -0.02 2.25 16 11 N -0.67 -29.36 5.16 -499.46 -2.58 -31.94 16 12 C 0.22 12.07 5.25 85.56 0.45 12.52 16 13 C -0.53 -30.97 9.36 25.60 0.24 -30.73 16 14 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.82 13.29 21.44 0.28 -57.53 16 17 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.07 -2.08 2.66 -10.79 -0.03 -2.11 16 22 C -0.14 -3.38 8.89 71.98 0.64 -2.74 16 23 C -0.13 -3.96 9.05 71.98 0.65 -3.31 16 24 C -0.12 -3.88 8.75 22.27 0.19 -3.69 16 25 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 26 H 0.05 0.95 6.28 -2.39 -0.02 0.93 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.07 1.39 8.08 -2.38 -0.02 1.37 16 35 H 0.13 3.17 8.05 -2.91 -0.02 3.14 16 36 H 0.12 3.75 6.51 -2.91 -0.02 3.73 16 37 H 0.33 13.97 6.47 -89.70 -0.58 13.39 16 38 H -0.01 -0.42 7.93 -2.39 -0.02 -0.43 16 39 H -0.04 -2.70 8.00 -2.39 -0.02 -2.72 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.31 6.74 -2.38 -0.02 1.29 16 45 H 0.05 1.83 7.37 -2.39 -0.02 1.81 16 46 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.12 3.53 8.04 -2.91 -0.02 3.51 16 49 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -65.32 384.60 4.56 -60.76 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.30 Total: 28.45 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 4.52 Total: -46.94 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -2.29 Total: -89.47 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.32 4.56 -60.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557203365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.771 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds