Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47260 * 2 1 4 4 C 1.53003 * 109.47039 * 240.00188 * 2 1 3 5 5 C 1.50706 * 109.47005 * 295.00208 * 4 2 1 6 6 C 1.38234 * 119.99802 * 269.72539 * 5 4 2 7 7 C 1.38234 * 119.99972 * 179.73979 * 6 5 4 8 8 C 1.38234 * 119.99849 * 0.56070 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72001 * 8 7 6 10 10 H 1.09003 * 109.47036 * 159.97686 * 9 8 7 11 11 N 1.46896 * 109.47479 * 39.97382 * 9 8 7 12 12 C 1.46899 * 110.99806 * 83.56476 * 11 9 8 13 13 C 1.50711 * 109.47110 * 182.65495 * 12 11 9 14 14 H 1.07997 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99705 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00225 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99495 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47482 * 59.99249 * 17 15 13 19 19 H 1.48500 * 109.46941 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46930 * 299.99604 * 17 15 13 21 21 C 1.53004 * 109.47241 * 279.97089 * 9 8 7 22 22 C 1.52995 * 109.47179 * 175.09352 * 21 9 8 23 23 C 1.52996 * 109.47265 * 295.09711 * 21 9 8 24 24 C 1.38235 * 119.99864 * 359.69570 * 8 7 6 25 25 C 1.38229 * 119.99946 * 90.00041 * 5 4 2 26 26 H 1.09008 * 109.47030 * 59.99887 * 1 2 3 27 27 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47102 * 300.00020 * 1 2 3 29 29 H 1.08998 * 109.47139 * 120.00109 * 2 1 3 30 30 H 1.09007 * 109.47346 * 59.99923 * 3 2 1 31 31 H 1.09002 * 109.47464 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47556 * 300.00443 * 3 2 1 33 33 H 1.08998 * 109.47377 * 54.99844 * 4 2 1 34 34 H 1.09004 * 109.47162 * 175.00539 * 4 2 1 35 35 H 1.08007 * 120.00293 * 0.02562 * 6 5 4 36 36 H 1.08001 * 120.00217 * 180.27139 * 7 6 5 37 37 H 1.00902 * 110.99794 * 319.61611 * 11 9 8 38 38 H 1.08999 * 109.47182 * 302.65037 * 12 11 9 39 39 H 1.09002 * 109.47608 * 62.65616 * 12 11 9 40 40 H 0.97002 * 119.99301 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.46393 * 55.09919 * 21 9 8 42 42 H 1.08999 * 109.47479 * 54.84384 * 22 21 9 43 43 H 1.09002 * 109.47068 * 174.84273 * 22 21 9 44 44 H 1.08998 * 109.47448 * 294.84426 * 22 21 9 45 45 H 1.09003 * 109.47242 * 59.99857 * 23 21 9 46 46 H 1.09004 * 109.47187 * 179.97438 * 23 21 9 47 47 H 1.08994 * 109.47063 * 299.99931 * 23 21 9 48 48 H 1.08000 * 119.99832 * 180.02562 * 24 8 7 49 49 H 1.07997 * 120.00458 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 -2.1733 -1.1890 6 6 2.4839 -3.0975 -0.6002 7 6 2.1157 -4.4286 -0.5400 8 6 0.9102 -4.8373 -1.0790 9 6 0.5117 -6.2894 -1.0191 10 1 -0.5667 -6.3760 -1.1518 11 7 0.8909 -6.8478 0.2856 12 6 -0.1313 -6.5572 1.2998 13 6 0.3215 -7.0874 2.6359 14 1 1.2733 -7.5904 2.7227 15 6 -0.4798 -6.9313 3.7470 16 7 -1.6389 -6.3193 3.6410 17 14 0.0813 -7.5892 5.4028 18 1 1.3590 -6.9374 5.7873 19 1 -0.9520 -7.2952 6.4281 20 1 0.2831 -9.0575 5.3095 21 6 1.2259 -7.0606 -2.1309 22 6 0.9179 -8.5531 -1.9954 23 6 0.7385 -6.5609 -3.4924 24 6 0.0700 -3.9139 -1.6725 25 6 0.4355 -2.5819 -1.7275 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6054 -0.2617 -2.1370 34 1 3.1264 -0.6444 -1.2952 35 1 3.4278 -2.7790 -0.1830 36 1 2.7721 -5.1500 -0.0761 37 1 1.7952 -6.5071 0.5757 38 1 -0.2794 -5.4794 1.3679 39 1 -1.0693 -7.0357 1.0180 40 1 -2.2024 -6.2092 4.4229 41 1 2.3013 -6.9027 -2.0495 42 1 -0.1618 -8.7018 -1.9847 43 1 1.3505 -9.0914 -2.8387 44 1 1.3456 -8.9294 -1.0661 45 1 0.9580 -5.4975 -3.5890 46 1 1.2476 -7.1100 -4.2845 47 1 -0.3369 -6.7187 -3.5737 48 1 -0.8721 -4.2332 -2.0932 49 1 -0.2207 -1.8606 -2.1918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557203366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -14.453475 kcal Electronic energy + Delta-G solvation = -23526.980807 eV Core-core repulsion = 20452.175764 eV Total energy + Delta-G solvation = -3074.805043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.71526 -37.41708 -35.54316 -33.70011 -32.08268 -31.03426 -30.54007 -27.55277 -27.18273 -26.83424 -25.67519 -23.74768 -22.63091 -21.43062 -20.81102 -19.91502 -19.33062 -16.67747 -16.13832 -15.32499 -15.21408 -14.73069 -14.40246 -14.36880 -14.24348 -13.93990 -13.73188 -13.26195 -12.98061 -12.88596 -12.30864 -12.27756 -12.22336 -12.05696 -11.87426 -11.78104 -11.65484 -11.43318 -11.28881 -10.94568 -10.83347 -10.79850 -10.72557 -10.70300 -10.57773 -10.46042 -10.22150 -10.15710 -9.84651 -9.13901 -8.57558 -8.46935 -8.12520 -7.27458 -6.00161 -4.01984 1.66263 1.72985 3.34663 3.38540 3.41470 4.04427 4.44831 4.77694 4.81255 4.94112 5.04785 5.10904 5.17092 5.27866 5.33794 5.35933 5.41034 5.47535 5.53901 5.58781 5.63444 5.75939 5.79206 5.80379 5.83029 5.85918 5.97104 6.00221 6.05335 6.09736 6.17854 6.22448 6.28242 6.31659 6.32358 6.39816 6.41445 6.47983 6.71506 6.75758 6.87396 6.91415 7.00003 7.30885 7.34467 7.51842 7.80500 8.16355 8.40433 8.64532 9.06951 9.62555 11.10863 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005145 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.430839 B = 5441.162361 C = 7490.321836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.092 4.092 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.092 4.092 9 C 0.126 3.874 10 H 0.077 0.923 11 N -0.677 5.677 12 C 0.196 3.804 13 C -0.515 4.515 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.077 4.077 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.112 4.112 25 C -0.116 4.116 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.328 0.672 38 H -0.012 1.012 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.116 0.884 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 10.136 -12.988 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.109 4.109 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.128 4.128 8 C -0.094 4.094 9 C 0.015 3.985 10 H 0.095 0.905 11 N -0.307 5.307 12 C 0.070 3.930 13 C -0.553 4.553 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.096 4.096 22 C -0.189 4.189 23 C -0.204 4.204 24 C -0.131 4.131 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.006 0.994 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.068 9.538 -12.988 17.219 hybrid contribution 0.225 0.709 1.232 1.439 sum 6.294 10.247 -11.756 16.817 Atomic orbital electron populations 1.21912 0.95079 1.02607 1.01165 1.21088 0.96295 0.95527 0.98200 1.21848 1.00738 0.96138 1.01621 1.20622 1.00643 0.91534 0.98070 1.19714 0.95009 0.95026 0.99470 1.20907 0.99454 0.93017 0.99939 1.20922 0.96634 0.95843 0.99428 1.20850 0.94246 0.97737 0.96544 1.20691 0.99365 0.86507 0.91945 0.90474 1.60911 1.06757 1.61101 1.01886 1.19538 0.90357 0.94387 0.88734 1.21142 1.04705 1.36894 0.92583 0.92170 1.24957 0.94935 0.95367 0.99120 1.69956 1.10812 1.42723 1.30107 0.86588 0.78183 0.79474 0.83308 1.20332 1.21372 1.20163 1.21036 0.99542 0.95792 0.93271 1.21641 1.01309 0.94561 1.01401 1.21868 1.00956 1.00905 0.96716 1.21010 0.99302 0.92946 0.99828 1.20918 0.96186 0.95640 1.00703 0.93074 0.91747 0.92957 0.90988 0.92725 0.92851 0.92854 0.91451 0.91431 0.86693 0.86173 0.85295 0.99400 0.95635 0.92934 0.91887 0.93300 0.94348 0.90998 0.92809 0.93212 0.92965 0.86596 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.76 37.16 0.33 -1.40 16 2 C -0.09 -1.01 2.91 -90.62 -0.26 -1.28 16 3 C -0.15 -1.31 9.19 37.15 0.34 -0.97 16 4 C -0.07 -0.77 4.84 -27.88 -0.13 -0.91 16 5 C -0.09 -1.24 4.71 -104.62 -0.49 -1.74 16 6 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 7 C -0.11 -1.78 9.13 -39.58 -0.36 -2.14 16 8 C -0.09 -1.54 3.88 -104.63 -0.41 -1.94 16 9 C 0.13 2.22 1.81 -68.87 -0.12 2.10 16 10 H 0.08 1.47 7.72 -51.93 -0.40 1.06 16 11 N -0.68 -14.24 5.36 -109.22 -0.59 -14.82 16 12 C 0.20 5.16 5.24 -4.97 -0.03 5.13 16 13 C -0.51 -14.62 9.29 -34.44 -0.32 -14.94 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 17 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.08 -1.15 2.66 -90.62 -0.24 -1.39 16 22 C -0.13 -1.98 8.89 37.16 0.33 -1.65 16 23 C -0.15 -1.87 8.91 37.16 0.33 -1.54 16 24 C -0.11 -1.73 8.76 -39.58 -0.35 -2.08 16 25 C -0.12 -1.62 7.96 -39.58 -0.32 -1.93 16 26 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.87 6.26 -51.93 -0.33 0.55 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.12 1.90 6.51 -52.49 -0.34 1.56 16 37 H 0.33 6.72 6.34 -39.29 -0.25 6.47 16 38 H -0.01 -0.34 7.90 -51.93 -0.41 -0.75 16 39 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.20 7.66 -51.93 -0.40 0.81 16 45 H 0.05 0.69 6.75 -51.93 -0.35 0.34 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 49 H 0.11 1.36 8.04 -52.49 -0.42 0.94 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -29.71 384.85 -10.45 -40.17 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -9.20 Total: 5.47 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.19 Total: -27.16 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.15 Total: -41.14 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.71 -10.45 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557203366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.713 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds