Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47260 * 2 1 4 4 C 1.53003 * 109.47039 * 240.00188 * 2 1 3 5 5 C 1.50706 * 109.47005 * 295.00208 * 4 2 1 6 6 C 1.38234 * 119.99802 * 269.72539 * 5 4 2 7 7 C 1.38234 * 119.99972 * 179.73979 * 6 5 4 8 8 C 1.38234 * 119.99849 * 0.56070 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72001 * 8 7 6 10 10 H 1.09003 * 109.47036 * 159.97686 * 9 8 7 11 11 N 1.46896 * 109.47479 * 39.97382 * 9 8 7 12 12 C 1.46899 * 110.99806 * 83.56476 * 11 9 8 13 13 C 1.50711 * 109.47110 * 182.65495 * 12 11 9 14 14 H 1.07997 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99705 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00225 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99495 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47482 * 59.99249 * 17 15 13 19 19 H 1.48500 * 109.46941 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46930 * 299.99604 * 17 15 13 21 21 C 1.53004 * 109.47241 * 279.97089 * 9 8 7 22 22 C 1.52995 * 109.47179 * 175.09352 * 21 9 8 23 23 C 1.52996 * 109.47265 * 295.09711 * 21 9 8 24 24 C 1.38235 * 119.99864 * 359.69570 * 8 7 6 25 25 C 1.38229 * 119.99946 * 90.00041 * 5 4 2 26 26 H 1.09008 * 109.47030 * 59.99887 * 1 2 3 27 27 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47102 * 300.00020 * 1 2 3 29 29 H 1.08998 * 109.47139 * 120.00109 * 2 1 3 30 30 H 1.09007 * 109.47346 * 59.99923 * 3 2 1 31 31 H 1.09002 * 109.47464 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47556 * 300.00443 * 3 2 1 33 33 H 1.08998 * 109.47377 * 54.99844 * 4 2 1 34 34 H 1.09004 * 109.47162 * 175.00539 * 4 2 1 35 35 H 1.08007 * 120.00293 * 0.02562 * 6 5 4 36 36 H 1.08001 * 120.00217 * 180.27139 * 7 6 5 37 37 H 1.00902 * 110.99794 * 319.61611 * 11 9 8 38 38 H 1.08999 * 109.47182 * 302.65037 * 12 11 9 39 39 H 1.09002 * 109.47608 * 62.65616 * 12 11 9 40 40 H 0.97002 * 119.99301 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.46393 * 55.09919 * 21 9 8 42 42 H 1.08999 * 109.47479 * 54.84384 * 22 21 9 43 43 H 1.09002 * 109.47068 * 174.84273 * 22 21 9 44 44 H 1.08998 * 109.47448 * 294.84426 * 22 21 9 45 45 H 1.09003 * 109.47242 * 59.99857 * 23 21 9 46 46 H 1.09004 * 109.47187 * 179.97438 * 23 21 9 47 47 H 1.08994 * 109.47063 * 299.99931 * 23 21 9 48 48 H 1.08000 * 119.99832 * 180.02562 * 24 8 7 49 49 H 1.07997 * 120.00458 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 -2.1733 -1.1890 6 6 2.4839 -3.0975 -0.6002 7 6 2.1157 -4.4286 -0.5400 8 6 0.9102 -4.8373 -1.0790 9 6 0.5117 -6.2894 -1.0191 10 1 -0.5667 -6.3760 -1.1518 11 7 0.8909 -6.8478 0.2856 12 6 -0.1313 -6.5572 1.2998 13 6 0.3215 -7.0874 2.6359 14 1 1.2733 -7.5904 2.7227 15 6 -0.4798 -6.9313 3.7470 16 7 -1.6389 -6.3193 3.6410 17 14 0.0813 -7.5892 5.4028 18 1 1.3590 -6.9374 5.7873 19 1 -0.9520 -7.2952 6.4281 20 1 0.2831 -9.0575 5.3095 21 6 1.2259 -7.0606 -2.1309 22 6 0.9179 -8.5531 -1.9954 23 6 0.7385 -6.5609 -3.4924 24 6 0.0700 -3.9139 -1.6725 25 6 0.4355 -2.5819 -1.7275 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6054 -0.2617 -2.1370 34 1 3.1264 -0.6444 -1.2952 35 1 3.4278 -2.7790 -0.1830 36 1 2.7721 -5.1500 -0.0761 37 1 1.7952 -6.5071 0.5757 38 1 -0.2794 -5.4794 1.3679 39 1 -1.0693 -7.0357 1.0180 40 1 -2.2024 -6.2092 4.4229 41 1 2.3013 -6.9027 -2.0495 42 1 -0.1618 -8.7018 -1.9847 43 1 1.3505 -9.0914 -2.8387 44 1 1.3456 -8.9294 -1.0661 45 1 0.9580 -5.4975 -3.5890 46 1 1.2476 -7.1100 -4.2845 47 1 -0.3369 -6.7187 -3.5737 48 1 -0.8721 -4.2332 -2.0932 49 1 -0.2207 -1.8606 -2.1918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557203366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -28.643457 kcal Electronic energy + Delta-G solvation = -23527.596131 eV Core-core repulsion = 20452.175764 eV Total energy + Delta-G solvation = -3075.420367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93177 -38.64507 -36.62053 -35.55022 -33.88638 -32.25521 -31.76926 -29.15536 -28.14041 -27.94624 -27.09737 -25.21287 -24.02534 -23.08926 -22.05822 -20.83154 -20.66390 -18.58040 -17.63980 -16.72365 -16.41889 -16.32441 -15.78546 -15.63795 -15.27557 -15.11600 -14.96129 -14.70392 -14.24003 -14.22233 -13.92843 -13.62946 -13.34907 -13.24155 -13.02839 -12.99939 -12.92265 -12.74526 -12.69568 -12.58096 -12.42252 -12.09398 -11.90678 -11.78809 -11.77087 -11.64574 -11.53560 -11.45414 -11.42824 -11.17303 -10.66105 -9.76262 -9.34479 -9.06851 -8.22224 -6.33466 0.47657 0.53981 1.39137 1.42819 1.50645 2.39026 2.86269 3.11197 3.55521 3.74142 3.87807 3.93861 4.06179 4.10667 4.13953 4.22213 4.27597 4.36981 4.51438 4.52188 4.62874 4.70917 4.76928 4.80831 4.86139 4.88142 4.91831 4.94615 5.05506 5.06086 5.08003 5.11150 5.13196 5.19818 5.21935 5.27900 5.34822 5.35422 5.41791 5.47476 5.50531 5.56946 5.59043 5.65898 5.75306 5.76041 6.03639 6.17092 6.46078 6.73087 6.90460 7.37365 8.89211 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005145 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.430839 B = 5441.162361 C = 7490.321836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.067 4.067 5 C -0.089 4.089 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.111 4.111 9 C 0.128 3.872 10 H 0.055 0.945 11 N -0.672 5.672 12 C 0.219 3.781 13 C -0.535 4.535 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.071 4.071 22 C -0.129 4.129 23 C -0.139 4.139 24 C -0.126 4.126 25 C -0.116 4.116 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.333 0.667 38 H -0.045 1.045 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.120 0.880 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 11.253 -13.681 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.104 4.104 5 C -0.089 4.089 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.113 4.113 9 C 0.018 3.982 10 H 0.073 0.927 11 N -0.301 5.301 12 C 0.091 3.909 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.090 4.090 22 C -0.186 4.186 23 C -0.196 4.196 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.152 0.848 38 H -0.027 1.027 39 H 0.011 0.989 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.138 0.862 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.586 10.653 -13.708 18.946 hybrid contribution -0.267 0.412 1.399 1.483 sum 7.319 11.066 -12.309 18.098 Atomic orbital electron populations 1.21913 0.95709 1.01128 1.02030 1.21065 0.95736 0.96833 0.97412 1.21802 1.01302 0.94484 1.02268 1.20668 1.01708 0.89423 0.98618 1.20073 0.94379 0.96480 0.97941 1.21179 1.00477 0.92463 0.99835 1.21016 0.96652 0.96866 1.00099 1.20735 0.95165 0.97110 0.98245 1.20695 0.98466 0.88146 0.90909 0.92653 1.60801 1.05594 1.61653 1.02093 1.19075 0.90385 0.91661 0.89786 1.21516 1.05010 1.37135 0.93699 0.91794 1.25921 0.94833 0.95354 1.03375 1.70098 1.12071 1.43792 1.31403 0.85429 0.78037 0.79098 0.78006 1.19170 1.20823 1.19184 1.20992 0.99357 0.95247 0.93368 1.21606 1.00622 0.94916 1.01453 1.21791 1.01129 1.01067 0.95642 1.21163 0.99357 0.93719 1.00191 1.21189 0.96666 0.95259 1.00261 0.91311 0.94302 0.93077 0.92971 0.92712 0.91943 0.91611 0.89741 0.89964 0.84842 0.86558 0.84829 1.02703 0.98880 0.92731 0.91511 0.94342 0.91625 0.93141 0.92858 0.91083 0.92967 0.86239 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.76 71.98 0.63 -2.65 16 2 C -0.09 -1.85 2.91 -10.79 -0.03 -1.88 16 3 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 4 C -0.07 -1.28 4.84 29.85 0.14 -1.13 16 5 C -0.09 -2.28 4.71 -19.87 -0.09 -2.37 16 6 C -0.12 -3.45 9.70 22.27 0.22 -3.24 16 7 C -0.13 -4.21 9.13 22.27 0.20 -4.01 16 8 C -0.11 -3.82 3.88 -19.87 -0.08 -3.89 16 9 C 0.13 4.73 1.81 44.17 0.08 4.81 16 10 H 0.06 2.25 7.72 -2.39 -0.02 2.23 16 11 N -0.67 -29.58 5.36 -499.45 -2.68 -32.26 16 12 C 0.22 12.12 5.24 85.56 0.45 12.57 16 13 C -0.54 -31.25 9.29 25.60 0.24 -31.01 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.00 0.20 5.46 84.66 0.46 0.66 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 17 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.07 -2.09 2.66 -10.80 -0.03 -2.12 16 22 C -0.13 -3.85 8.89 71.98 0.64 -3.21 16 23 C -0.14 -3.39 8.91 71.98 0.64 -2.75 16 24 C -0.13 -3.94 8.76 22.27 0.20 -3.75 16 25 C -0.12 -3.12 7.96 22.27 0.18 -2.95 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.04 1.03 6.26 -2.39 -0.01 1.02 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.08 1.36 8.08 -2.38 -0.02 1.35 16 35 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.12 3.79 6.51 -2.91 -0.02 3.77 16 37 H 0.33 14.15 6.34 -89.69 -0.57 13.58 16 38 H -0.04 -2.72 7.90 -2.39 -0.02 -2.74 16 39 H -0.01 -0.42 8.11 -2.39 -0.02 -0.44 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.71 7.66 -2.39 -0.02 1.69 16 45 H 0.05 1.31 6.75 -2.39 -0.02 1.30 16 46 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.12 3.54 8.04 -2.91 -0.02 3.51 16 49 H 0.14 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -65.77 384.85 4.45 -61.32 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.31 Total: 29.73 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 4.51 Total: -48.40 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.39 Total: -89.81 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.77 4.45 -61.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557203366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.675 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds