Wall clock time and date at job start Tue Mar 31 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99689 * 359.90912 * 6 4 3 8 8 C 1.50703 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.46479 * 199.97842 * 8 7 6 10 10 C 1.53000 * 109.47337 * 79.97399 * 8 7 6 11 11 N 1.46901 * 109.47187 * 319.97237 * 8 7 6 12 12 C 1.46899 * 110.99960 * 205.00671 * 11 8 7 13 13 C 1.53002 * 109.46999 * 180.02562 * 12 11 8 14 14 C 1.52994 * 109.46963 * 299.99329 * 13 12 11 15 15 C 1.52994 * 109.47139 * 59.99876 * 13 12 11 16 16 C 1.53006 * 109.46864 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.46658 * 179.97438 * 16 13 12 18 18 H 1.07993 * 120.00080 * 359.97438 * 17 16 13 19 19 C 1.37873 * 119.99529 * 179.97438 * 17 16 13 20 20 N 1.31516 * 120.00337 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47029 * 90.00148 * 21 19 17 23 23 H 1.48493 * 109.47279 * 210.00423 * 21 19 17 24 24 H 1.48500 * 109.46889 * 330.00260 * 21 19 17 25 25 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 27 27 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 28 28 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 29 29 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 30 30 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 31 31 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 32 32 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.47024 * 59.99867 * 10 8 7 35 35 H 1.08998 * 109.46925 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47057 * 300.00000 * 10 8 7 37 37 H 1.00903 * 111.00075 * 328.95436 * 11 8 7 38 38 H 1.09002 * 109.46800 * 299.99937 * 12 11 8 39 39 H 1.09001 * 109.47305 * 59.99447 * 12 11 8 40 40 H 1.09002 * 109.47251 * 60.00447 * 14 13 12 41 41 H 1.09000 * 109.47430 * 180.02562 * 14 13 12 42 42 H 1.08998 * 109.47739 * 300.00284 * 14 13 12 43 43 H 1.08998 * 109.47860 * 59.99764 * 15 13 12 44 44 H 1.09006 * 109.46869 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.46968 * 299.99488 * 15 13 12 46 46 H 1.09002 * 109.47022 * 299.99804 * 16 13 12 47 47 H 1.08993 * 109.47004 * 59.99696 * 16 13 12 48 48 H 0.97003 * 120.00493 * 180.02562 * 20 19 17 49 49 H 1.08001 * 120.00371 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0000 8 6 4.3340 -2.5022 -0.0005 9 1 3.6790 -3.2997 -0.3513 10 6 4.8074 -2.8184 1.4197 11 7 5.4968 -2.3960 -0.8920 12 6 5.9017 -3.7177 -1.3889 13 6 7.1130 -3.5667 -2.3113 14 6 6.7448 -2.6683 -3.4936 15 6 8.2708 -2.9376 -1.5337 16 6 7.5351 -4.9435 -2.8283 17 6 8.7279 -4.7946 -3.7373 18 1 9.1430 -3.8159 -3.9275 19 6 9.2891 -5.9078 -4.3261 20 7 8.7832 -7.0996 -4.0948 21 14 10.7671 -5.7233 -5.4534 22 1 12.0147 -5.8236 -4.6543 23 1 10.7468 -6.7994 -6.4765 24 1 10.7148 -4.4002 -6.1256 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6582 2.1325 -0.0048 30 1 4.5154 2.8176 1.0275 31 1 5.2866 2.3716 -0.5135 32 1 3.7452 3.2616 -0.5145 33 1 5.3517 0.0000 -0.0004 34 1 3.9447 -2.8972 2.0811 35 1 5.3521 -3.7625 1.4193 36 1 5.4624 -2.0208 1.7703 37 1 5.3100 -1.7641 -1.6562 38 1 6.1644 -4.3577 -0.5465 39 1 5.0767 -4.1662 -1.9424 40 1 6.4444 -1.6875 -3.1250 41 1 7.6076 -2.5610 -4.1510 42 1 5.9200 -3.1165 -4.0476 43 1 8.5331 -3.5776 -0.6913 44 1 9.1339 -2.8304 -2.1908 45 1 7.9703 -1.9567 -1.1651 46 1 7.7976 -5.5832 -1.9857 47 1 6.7104 -5.3921 -3.3821 48 1 9.1782 -7.8829 -4.5087 49 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561347464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:28 Heat of formation + Delta-G solvation = -12.203631 kcal Electronic energy + Delta-G solvation = -23193.242410 eV Core-core repulsion = 20118.534928 eV Total energy + Delta-G solvation = -3074.707482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.89417 -37.73291 -35.45201 -33.62447 -32.55179 -31.31432 -29.18464 -27.41855 -26.87143 -26.78863 -26.30168 -25.30689 -23.37189 -22.04993 -20.81492 -19.76570 -17.87765 -16.47217 -16.18927 -15.99179 -15.41437 -14.65577 -14.48255 -14.24217 -13.95526 -13.76791 -13.38980 -13.34560 -13.04031 -12.97528 -12.70422 -12.70055 -12.30228 -12.09109 -12.03217 -11.97142 -11.79146 -11.48290 -11.37552 -11.07410 -10.93023 -10.84858 -10.73575 -10.59485 -10.46839 -10.21733 -10.08985 -9.64928 -9.00153 -8.82550 -8.64106 -8.59926 -8.29666 -8.07088 -5.94224 -3.94217 1.28454 1.32007 3.34699 3.41170 3.43951 3.63935 4.38314 4.51915 4.61523 4.67926 4.76764 5.07812 5.14436 5.21876 5.36478 5.37950 5.41607 5.45610 5.46523 5.49559 5.52087 5.65966 5.71999 5.73093 5.83578 5.85446 5.98637 6.01778 6.08425 6.11157 6.29823 6.33475 6.36870 6.46512 6.52715 6.55829 6.60249 6.69592 6.83269 6.86199 6.97834 7.24197 7.27480 7.29371 7.45169 7.70998 7.74663 7.88717 8.06302 8.50867 9.11250 9.68490 11.17471 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.003061 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.076323 B = 9145.535498 C = 9472.713346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.086 4.086 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.075 4.075 8 C 0.121 3.879 9 H 0.047 0.953 10 C -0.132 4.132 11 N -0.679 5.679 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.340 0.660 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.258 0.742 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 15.906 10.111 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.170 4.170 6 C -0.123 4.123 7 C -0.076 4.076 8 C 0.011 3.989 9 H 0.065 0.935 10 C -0.190 4.190 11 N -0.312 5.312 12 C -0.059 4.059 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.172 4.172 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.140 4.140 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.068 0.932 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.860 15.716 10.575 23.472 hybrid contribution 0.069 -0.368 -1.321 1.373 sum -13.791 15.349 9.254 22.614 Atomic orbital electron populations 1.20768 0.91410 1.02534 1.02212 1.19820 0.95819 0.93082 0.99972 1.20855 0.93590 0.97286 1.02709 1.19930 0.93707 0.95423 0.99529 1.20782 1.00074 0.93985 1.02184 1.20979 1.00544 0.90858 0.99924 1.20004 0.93315 0.95173 0.99073 1.20444 0.90629 0.92603 0.95199 0.93468 1.21749 1.00648 1.02204 0.94401 1.60719 1.34881 1.12578 1.22985 1.22164 0.97092 0.88874 0.97752 1.20618 0.93001 0.98843 0.93338 1.21763 1.01370 0.97100 0.98362 1.21588 0.97882 0.98779 0.98968 1.19120 0.96058 0.89449 0.95723 1.21242 1.13225 0.92936 1.27016 0.92300 1.25015 0.97211 0.95477 0.96908 1.69968 1.41177 0.98028 1.44631 0.86670 0.83416 0.77659 0.80710 1.20788 1.21414 1.19948 1.20895 0.93565 0.97479 1.02098 0.91310 0.91656 0.91751 0.86539 0.91336 0.91283 0.91820 0.85039 0.93094 0.92182 0.91986 0.83977 0.91499 0.95908 0.94843 0.91748 0.94173 0.94210 0.92774 0.93913 0.96706 0.96971 0.93190 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.90 5.88 -104.63 -0.62 -1.51 16 3 C -0.13 -1.29 9.36 -39.58 -0.37 -1.66 16 4 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 5 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 6 C -0.10 -1.25 8.66 -39.58 -0.34 -1.59 16 7 C -0.08 -0.92 4.71 -104.62 -0.49 -1.41 16 8 C 0.12 1.57 2.82 -68.86 -0.19 1.38 16 9 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 10 C -0.13 -1.62 9.39 37.16 0.35 -1.27 16 11 N -0.68 -9.94 4.91 -107.95 -0.53 -10.47 16 12 C 0.07 1.21 4.44 -3.82 -0.02 1.20 16 13 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 14 C -0.13 -2.43 7.89 37.15 0.29 -2.14 16 15 C -0.11 -2.23 8.06 37.15 0.30 -1.93 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.91 7.65 -34.44 -0.26 -14.18 16 18 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.12 -1.38 9.32 -39.59 -0.37 -1.75 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.13 1.59 7.72 -52.49 -0.41 1.19 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.34 4.99 6.03 -39.29 -0.24 4.75 16 38 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 39 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 40 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 41 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 45 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 49 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -29.35 382.58 -9.96 -39.31 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.99 Total: 1.51 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -1.92 Total: -26.54 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.21 Total: -36.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.35 -9.96 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561347464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.108 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds